ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RRP1_DROME (P27864) Recombination repair protein 1 (DNA-(apurini... 28 5.7
2NELFB_HUMAN (Q8WX92) Negative elongation factor B (NELF-B) (Cofa... 28 5.7
3Y2507_GLOVI (Q7NHM8) UPF0082 protein glr2507 27 9.7
4HAK15_ORYSA (Q7XPL3) Probable potassium transporter 15 (OsHAK15) 27 9.7

>RRP1_DROME (P27864) Recombination repair protein 1 (DNA-(apurinic or|
           apyrimidinic site) lyase) (EC 4.2.99.18)
          Length = 679

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 266 YHPDWYCLPVNFVGLAV 316
           YHP W C+P  + G+A+
Sbjct: 479 YHPYWLCMPGGYAGVAI 495



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>NELFB_HUMAN (Q8WX92) Negative elongation factor B (NELF-B) (Cofactor of BRCA1)|
          Length = 580

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -2

Query: 179 IVDGMIFF--RRQSKFLSSFIPMSMLLLVDNWTWHISMPFP 63
           ++D  +F   + + + ++ F+PM M  LVD++T+++    P
Sbjct: 354 MIDSQVFKEPKMEVELITRFLPMLMSFLVDDYTFNVDQKLP 394



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>Y2507_GLOVI (Q7NHM8) UPF0082 protein glr2507|
          Length = 251

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 329 ASPDELRALRSLLASNTNLDDRSRQQATHMLDEEI 225
           A PD  R + +LL    +LDD  R  A H++++ +
Sbjct: 211 ADPDVARQVLTLLEKLESLDDVQRVSANHLVEDAV 245



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>HAK15_ORYSA (Q7XPL3) Probable potassium transporter 15 (OsHAK15)|
          Length = 867

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 94  LSTRSNMLIGIKEERNLLCLLKKIMPSTIQHSVNIYSCQRHCFAISSSSIWVACCL 261
           LS  S + +GI      L ++  ++   I +SV  Y+  +  FA+  S +   CCL
Sbjct: 278 LSAVSGLKVGIPNASQGLVVMISVVLLVILYSVQRYATSKMGFALGPSLLIWFCCL 333


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,064,486
Number of Sequences: 219361
Number of extensions: 833085
Number of successful extensions: 2240
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2240
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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