ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.005
2ref|XM_476089.1| Oryza sativa (japonica cultivar-group), predic... 50 0.005
3gb|AC132493.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.005
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
5dbj|AK121381.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
6gb|AY107462.1| Zea mays PCO070607 mRNA sequence 46 0.072
7emb|BX890581.13| Zebrafish DNA sequence from clone CH211-222O19 ... 42 1.1
8gb|AC005184.1| Homo sapiens Xp22 bins 45-47 BAC GSHB-665N22 (Gen... 42 1.1
9gb|AC091856.3| Homo sapiens chromosome 5 clone CTD-2315B5, compl... 42 1.1
10gb|AC097483.3| Homo sapiens BAC clone RP11-146N10 from 2, comple... 42 1.1
11gb|AC096511.4| Homo sapiens X BAC RP11-606J16 (Roswell Park Canc... 42 1.1
12emb|AL929193.19| Zebrafish DNA sequence from clone CH211-274P24 ... 42 1.1
13gb|U91319.1|HSU91319 Human chromosome 16p13.11 BAC clone CIT987S... 42 1.1
14emb|AL929224.16| Zebrafish DNA sequence from clone CH211-232P9 i... 42 1.1
15gb|AC134900.5| Mus musculus BAC clone RP23-249B22 from 10, compl... 42 1.1
16gb|AC154400.2| Mus musculus BAC clone RP23-163P4 from chromosome... 40 4.4
17gb|BT017930.1| Zea mays clone EL01N0519H11.c mRNA sequence 40 4.4
18gb|BC056573.1| Danio rerio zgc:65879, mRNA (cDNA clone MGC:65879... 40 4.4
19ref|NM_008859.1| Mus musculus protein kinase C, theta (Prkcq), mRNA 40 4.4
20emb|CT009702.5| Mouse DNA sequence from clone RP23-140A15 on chr... 40 4.4
21gb|AC126439.3| Mus musculus BAC clone RP24-290I17 from chromosom... 40 4.4
22gb|AC117680.7| Mus musculus chromosome 1, clone RP23-435M2, comp... 40 4.4
23gb|AY333070.1| Drosophila virilis antennapedia (Antp), CG10013 (... 40 4.4
24emb|AL034463.2|SPBC29A10 S.pombe chromosome II cosmid c29A10 40 4.4
25emb|AL669826.10| Mouse DNA sequence from clone RP23-5N19 on chro... 40 4.4
26gb|BC065361.1| Danio rerio zgc:65879, mRNA (cDNA clone MGC:77440... 40 4.4
27ref|NM_200561.2| Danio rerio zgc:65879 (zgc:65879), mRNA 40 4.4
28gb|AC025566.22| Homo sapiens 3 BAC RP11-501O2 (Roswell Park Canc... 40 4.4
29gb|AC068912.29| Mus musculus strain 129/Sv chromosome 11 clone c... 40 4.4
30gb|AC013546.8| Homo sapiens chromosome 8, clone RP11-431D12, com... 40 4.4
31gb|AC130802.36| Medicago truncatula clone mth2-28b21, complete s... 40 4.4
32gb|AC099331.2| Homo sapiens chromosome 3 clone RP11-90B15, compl... 40 4.4
33gb|AC099557.2| Homo sapiens chromosome 3 clone RP11-613N24, comp... 40 4.4
34gb|AC025125.15| Homo sapiens, clone RP11-147K16, complete sequence 40 4.4
35ref|NM_001021960.1| Schizosaccharomyces pombe 972h- hypothetical... 40 4.4
36gb|AC068787.41| Homo sapiens 12 BAC RP11-483I24 (Roswell Park Ca... 40 4.4
37gb|AC151984.3| Mus musculus BAC clone RP23-388K15 from chromosom... 40 4.4
38gb|AC131727.4| Mus musculus BAC clone RP23-120E19 from 14, compl... 40 4.4
39gb|AC155891.2| Medicago truncatula chromosome 2 BAC clone mth2-4... 40 4.4
40gb|AY109792.1| Zea mays CL22067_1 mRNA sequence 40 4.4
41emb|AL929020.10| Mouse DNA sequence from clone RP23-291L24 on ch... 40 4.4
42dbj|AP002802.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 4.4
43dbj|D11091.1|MUSPKCT Mouse mRNA for protein kinase C, complete cds 40 4.4
44gb|AC145348.3| Mus musculus BAC clone RP23-98E22 from 12, comple... 40 4.4
45gb|AC132465.3| Mus musculus BAC clone RP23-58D1 from 10, complet... 40 4.4
46emb|AL731700.12| Mouse DNA sequence from clone RP23-239G1 on chr... 40 4.4
47dbj|AP001976.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 4.4 
>gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617H07,
             complete sequence
          Length = 114135

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                         
Query: 215   attgcttcgcaatctcctcatcaagcatatgggtggcctgctgcctggacctatcatcca 274
             ||||||||||||||||||| || |  || || | |||||| |||||||| ||||||||||
Sbjct: 71294 attgcttcgcaatctcctcttcgataatgtgcgcggcctgttgcctggagctatcatcca 71235

                  
Query: 275   gattg 279
              ||||
Sbjct: 71234 aattg 71230
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>ref|XM_476089.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3717

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                        
Query: 215  attgcttcgcaatctcctcatcaagcatatgggtggcctgctgcctggacctatcatcca 274
            ||||||||||||||||||| || |  || || | |||||| |||||||| ||||||||||
Sbjct: 3709 attgcttcgcaatctcctcttcgataatgtgcgcggcctgttgcctggagctatcatcca 3650

                 
Query: 275  gattg 279
             ||||
Sbjct: 3649 aattg 3645
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>gb|AC132493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636E04,
            complete sequence
          Length = 141171

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                        
Query: 215  attgcttcgcaatctcctcatcaagcatatgggtggcctgctgcctggacctatcatcca 274
            ||||||||||||||||||| || |  || || | |||||| |||||||| ||||||||||
Sbjct: 2104 attgcttcgcaatctcctcttcgataatgtgcgcggcctgttgcctggagctatcatcca 2045

                 
Query: 275  gattg 279
             ||||
Sbjct: 2044 aattg 2040
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                           
Query: 215     attgcttcgcaatctcctcatcaagcatatgggtggcctgctgcctggacctatcatcca 274
               ||||||||||||||||||| || |  || || | |||||| |||||||| ||||||||||
Sbjct: 5864530 attgcttcgcaatctcctcttcgataatgtgcgcggcctgttgcctggagctatcatcca 5864471

                    
Query: 275     gattg 279
                ||||
Sbjct: 5864470 aattg 5864466
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>dbj|AK121381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H13, full
            insert sequence
          Length = 4316

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                        
Query: 215  attgcttcgcaatctcctcatcaagcatatgggtggcctgctgcctggacctatcatcca 274
            ||||||||||||||||||| || |  || || | |||||| |||||||| ||||||||||
Sbjct: 3908 attgcttcgcaatctcctcttcgataatgtgcgcggcctgttgcctggagctatcatcca 3849

                 
Query: 275  gattg 279
             ||||
Sbjct: 3848 aattg 3844
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>gb|AY107462.1| Zea mays PCO070607 mRNA sequence
          Length = 910

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                      
Query: 205 tgtcagcgccattgcttcgcaatctcctcatcaagcatatgggtggcctgctgcctgga 263
           ||||||||||| ||||| || |||||||| || || || ||||| |||||| |||||||
Sbjct: 619 tgtcagcgccactgcttggcgatctcctcgtcgaggatttgggtagcctgccgcctgga 561
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>emb|BX890581.13| Zebrafish DNA sequence from clone CH211-222O19 in linkage group 21,
              complete sequence
          Length = 205143

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 127    aaagaagaaagaaatttgctc 147
              |||||||||||||||||||||
Sbjct: 147289 aaagaagaaagaaatttgctc 147269
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>gb|AC005184.1| Homo sapiens Xp22 bins 45-47 BAC GSHB-665N22 (Genome Systems Human BAC
              Library) complete sequence
          Length = 157981

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 120    aggaataaaagaagaaagaaatttg 144
              |||||||||| ||||||||||||||
Sbjct: 149305 aggaataaaaaaagaaagaaatttg 149329
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>gb|AC091856.3| Homo sapiens chromosome 5 clone CTD-2315B5, complete sequence
          Length = 175220

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 120    aggaataaaagaagaaagaaa 140
              |||||||||||||||||||||
Sbjct: 143572 aggaataaaagaagaaagaaa 143592
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>gb|AC097483.3| Homo sapiens BAC clone RP11-146N10 from 2, complete sequence
          Length = 98433

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 126   aaaagaagaaagaaatttgct 146
             |||||||||||||||||||||
Sbjct: 48161 aaaagaagaaagaaatttgct 48181
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>gb|AC096511.4| Homo sapiens X BAC RP11-606J16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 76481

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 120   aggaataaaagaagaaagaaatttg 144
             |||||||||| ||||||||||||||
Sbjct: 26678 aggaataaaaaaagaaagaaatttg 26654
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>emb|AL929193.19| Zebrafish DNA sequence from clone CH211-274P24 in linkage group 20,
             complete sequence
          Length = 159094

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 127   aaagaagaaagaaatttgctc 147
             |||||||||||||||||||||
Sbjct: 38895 aaagaagaaagaaatttgctc 38915
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>gb|U91319.1|HSU91319 Human chromosome 16p13.11 BAC clone CIT987SK-98H8 complete sequence
          Length = 125630

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 120   aggaataaaagaagaaagaaa 140
             |||||||||||||||||||||
Sbjct: 13324 aggaataaaagaagaaagaaa 13304
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>emb|AL929224.16| Zebrafish DNA sequence from clone CH211-232P9 in linkage group 21,
            complete sequence
          Length = 176879

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 127  aaagaagaaagaaatttgctc 147
            |||||||||||||||||||||
Sbjct: 6394 aaagaagaaagaaatttgctc 6374
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>gb|AC134900.5| Mus musculus BAC clone RP23-249B22 from 10, complete sequence
          Length = 213095

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    ggcatttcaactttgaaaatg 36
             |||||||||||||||||||||
Sbjct: 81439 ggcatttcaactttgaaaatg 81419
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>gb|AC154400.2| Mus musculus BAC clone RP23-163P4 from chromosome 16, complete sequence
          Length = 180951

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   aggaataaaagaagaaagaa 139
             ||||||||||||||||||||
Sbjct: 58386 aggaataaaagaagaaagaa 58405
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>gb|BT017930.1| Zea mays clone EL01N0519H11.c mRNA sequence
          Length = 1362

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 81  atgccatgtccagttgtcca 100
           ||||||||||||||||||||
Sbjct: 960 atgccatgtccagttgtcca 979
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>gb|BC056573.1| Danio rerio zgc:65879, mRNA (cDNA clone MGC:65879 IMAGE:6800889),
           complete cds
          Length = 2701

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 ggaataaaagaagaaagaaa 140
           ||||||||||||||||||||
Sbjct: 126 ggaataaaagaagaaagaaa 145
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>ref|NM_008859.1| Mus musculus protein kinase C, theta (Prkcq), mRNA
          Length = 3313

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 121  ggaataaaagaagaaagaaa 140
            ||||||||||||||||||||
Sbjct: 3288 ggaataaaagaagaaagaaa 3307
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>emb|CT009702.5| Mouse DNA sequence from clone RP23-140A15 on chromosome 16, complete
             sequence
          Length = 230233

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   aggaataaaagaagaaagaa 139
             ||||||||||||||||||||
Sbjct: 46343 aggaataaaagaagaaagaa 46324
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>gb|AC126439.3| Mus musculus BAC clone RP24-290I17 from chromosome 14, complete
            sequence
          Length = 163978

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 120  aggaataaaagaagaaagaa 139
            ||||||||||||||||||||
Sbjct: 6608 aggaataaaagaagaaagaa 6627
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>gb|AC117680.7| Mus musculus chromosome 1, clone RP23-435M2, complete sequence
          Length = 202195

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    aggaataaaagaagaaagaa 139
              ||||||||||||||||||||
Sbjct: 170356 aggaataaaagaagaaagaa 170375
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>gb|AY333070.1| Drosophila virilis antennapedia (Antp), CG10013 (CG10013), CG31217
              (CG31217), and ultrabithorax (Ubx) genes, complete cds
          Length = 308092

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     tgtccacaaggagcaacatg 114
              ||||||||||||||||||||
Sbjct: 169880 tgtccacaaggagcaacatg 169861
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>emb|AL034463.2|SPBC29A10 S.pombe chromosome II cosmid c29A10
          Length = 42612

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  ccattgcttcgcaatctcct 232
            ||||||||||||||||||||
Sbjct: 7679 ccattgcttcgcaatctcct 7698
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>emb|AL669826.10| Mouse DNA sequence from clone RP23-5N19 on chromosome 11 Contains a
             novel gene and a CpG island, complete sequence
          Length = 154338

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 119   taggaataaaagaagaaagaaatt 142
             ||||||||||| ||||||||||||
Sbjct: 40642 taggaataaaataagaaagaaatt 40619
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>gb|BC065361.1| Danio rerio zgc:65879, mRNA (cDNA clone MGC:77440 IMAGE:6971142),
           complete cds
          Length = 4028

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 ggaataaaagaagaaagaaa 140
           ||||||||||||||||||||
Sbjct: 124 ggaataaaagaagaaagaaa 143
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>ref|NM_200561.2| Danio rerio zgc:65879 (zgc:65879), mRNA
          Length = 4028

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 ggaataaaagaagaaagaaa 140
           ||||||||||||||||||||
Sbjct: 124 ggaataaaagaagaaagaaa 143
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>gb|AC025566.22| Homo sapiens 3 BAC RP11-501O2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 200398

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    ataaaagaagaaagaaattt 143
              ||||||||||||||||||||
Sbjct: 132570 ataaaagaagaaagaaattt 132589
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>gb|AC068912.29| Mus musculus strain 129/Sv chromosome 11 clone ct7-326n13, complete
             sequence
          Length = 195413

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 119   taggaataaaagaagaaagaaatt 142
             ||||||||||| ||||||||||||
Sbjct: 45807 taggaataaaataagaaagaaatt 45830
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>gb|AC013546.8| Homo sapiens chromosome 8, clone RP11-431D12, complete sequence
          Length = 178142

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    atgctcataggaataaaaga 131
              ||||||||||||||||||||
Sbjct: 109645 atgctcataggaataaaaga 109664
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>gb|AC130802.36| Medicago truncatula clone mth2-28b21, complete sequence
          Length = 123626

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   aataaaagaagaaagaaatt 142
             ||||||||||||||||||||
Sbjct: 24758 aataaaagaagaaagaaatt 24777



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 123  aataaaagaagaaagaaatt 142
            ||||||||||||||||||||
Sbjct: 7042 aataaaagaagaaagaaatt 7061
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>gb|AC099331.2| Homo sapiens chromosome 3 clone RP11-90B15, complete sequence
          Length = 151498

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    tctcatggcatttcaacttt 29
             ||||||||||||||||||||
Sbjct: 84866 tctcatggcatttcaacttt 84885
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>gb|AC099557.2| Homo sapiens chromosome 3 clone RP11-613N24, complete sequence
          Length = 196355

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    tctcatggcatttcaacttt 29
             ||||||||||||||||||||
Sbjct: 49682 tctcatggcatttcaacttt 49663
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>gb|AC025125.15| Homo sapiens, clone RP11-147K16, complete sequence
          Length = 157481

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 120   aggaataaaagaagaaagaaattt 143
             ||||||| ||||||||||||||||
Sbjct: 86504 aggaatagaagaagaaagaaattt 86481
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>ref|NM_001021960.1| Schizosaccharomyces pombe 972h- hypothetical protein
           (SPBC29A10.04), partial mRNA
          Length = 3702

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 ccattgcttcgcaatctcct 232
           ||||||||||||||||||||
Sbjct: 455 ccattgcttcgcaatctcct 474
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>gb|AC068787.41| Homo sapiens 12 BAC RP11-483I24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 173320

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 118   ataggaataaaagaagaaagaaat 141
             |||| |||||||||||||||||||
Sbjct: 67042 atagcaataaaagaagaaagaaat 67065
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>gb|AC151984.3| Mus musculus BAC clone RP23-388K15 from chromosome 10, complete
             sequence
          Length = 201867

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 61    tcaggaaaaggcattgagatatgc 84
             ||||||||||||| ||||||||||
Sbjct: 74173 tcaggaaaaggcactgagatatgc 74196
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>gb|AC131727.4| Mus musculus BAC clone RP23-120E19 from 14, complete sequence
          Length = 208338

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    aggaataaaagaagaaagaa 139
              ||||||||||||||||||||
Sbjct: 184410 aggaataaaagaagaaagaa 184429
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>gb|AC155891.2| Medicago truncatula chromosome 2 BAC clone mth2-4g10, complete sequence
          Length = 148303

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    aataaaagaagaaagaaatt 142
              ||||||||||||||||||||
Sbjct: 135785 aataaaagaagaaagaaatt 135804
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>gb|AY109792.1| Zea mays CL22067_1 mRNA sequence
          Length = 700

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  atgccatgtccagttgtcca 100
           ||||||||||||||||||||
Sbjct: 510 atgccatgtccagttgtcca 491
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>emb|AL929020.10| Mouse DNA sequence from clone RP23-291L24 on chromosome 2, complete
             sequence
          Length = 158398

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   ggaataaaagaagaaagaaa 140
             ||||||||||||||||||||
Sbjct: 82236 ggaataaaagaagaaagaaa 82255
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>dbj|AP002802.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-876F14, complete
              sequence
          Length = 205594

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    ggaataaaagaagaaagaaa 140
              ||||||||||||||||||||
Sbjct: 126506 ggaataaaagaagaaagaaa 126487
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>dbj|D11091.1|MUSPKCT Mouse mRNA for protein kinase C, complete cds
          Length = 3313

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 121  ggaataaaagaagaaagaaa 140
            ||||||||||||||||||||
Sbjct: 3288 ggaataaaagaagaaagaaa 3307
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>gb|AC145348.3| Mus musculus BAC clone RP23-98E22 from 12, complete sequence
          Length = 183380

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   aggaataaaagaagaaagaa 139
             ||||||||||||||||||||
Sbjct: 68886 aggaataaaagaagaaagaa 68867
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>gb|AC132465.3| Mus musculus BAC clone RP23-58D1 from 10, complete sequence
          Length = 218313

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 61     tcaggaaaaggcattgagatatgc 84
              ||||||||||||| ||||||||||
Sbjct: 188828 tcaggaaaaggcactgagatatgc 188851
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>emb|AL731700.12| Mouse DNA sequence from clone RP23-239G1 on chromosome 2, complete
              sequence
          Length = 187667

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    gaagaaagaaatttgctctg 149
              ||||||||||||||||||||
Sbjct: 107829 gaagaaagaaatttgctctg 107810
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>dbj|AP001976.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-179A16
          Length = 141272

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   ggaataaaagaagaaagaaa 140
             ||||||||||||||||||||
Sbjct: 16536 ggaataaaagaagaaagaaa 16517


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,548,392
Number of Sequences: 3902068
Number of extensions: 3548392
Number of successful extensions: 91352
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 91252
Number of HSP's gapped (non-prelim): 105
length of query: 336
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 314
effective length of database: 17,147,199,772
effective search space: 5384220728408
effective search space used: 5384220728408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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