ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ABIL3_ORYSA (Q5NB83) Probable protein ABIL3 (Abl interactor-like... 31 1.6
2PSBS_SOLSG (Q9FPP4) Photosystem II 22 kDa protein, chloroplast p... 30 2.1
3PSBS_LYCES (P54773) Photosystem II 22 kDa protein, chloroplast p... 30 2.1
4YAV8_SCHPO (Q10177) Hypothetical protein C27F1.08 in chromosome I 30 2.8
5SALM_DROME (P39770) Homeotic protein spalt-major 30 2.8
6DGKB_RAT (P49621) Diacylglycerol kinase beta (EC 2.7.1.107) (Dig... 30 2.8
7GAPN_PEA (P81406) NADP-dependent glyceraldehyde-3-phosphate dehy... 29 4.7

>ABIL3_ORYSA (Q5NB83) Probable protein ABIL3 (Abl interactor-like protein 3)|
          Length = 317

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +2

Query: 137 KQSDLQHRRTPSPSSQNTHHKS 202
           +QS ++  R+PSPS++ THH+S
Sbjct: 191 RQSTMRSARSPSPSARGTHHRS 212



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>PSBS_SOLSG (Q9FPP4) Photosystem II 22 kDa protein, chloroplast precursor|
           (CP22)
          Length = 276

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 69  PLQAIQVPSSLLRFSTSKTELDSNKATSNIEGRLLQAAKTHITKV 203
           PL ++ +PS  LRFS+S T   S+K TS         AK    KV
Sbjct: 29  PLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKV 73



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>PSBS_LYCES (P54773) Photosystem II 22 kDa protein, chloroplast precursor|
           (CP22)
          Length = 276

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 69  PLQAIQVPSSLLRFSTSKTELDSNKATSNIEGRLLQAAKTHITKV 203
           PL ++ +PS  LRFS+S T   S+K TS         AK    KV
Sbjct: 29  PLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKV 73



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>YAV8_SCHPO (Q10177) Hypothetical protein C27F1.08 in chromosome I|
          Length = 521

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -2

Query: 196 VMCVLAAWRRRPSMLEVALFESNSVLLV 113
           V+ VL AWR   SML V +FE+   LLV
Sbjct: 192 VLLVLIAWRPEGSMLSVRIFETAVALLV 219



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>SALM_DROME (P39770) Homeotic protein spalt-major|
          Length = 1365

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 104 EVFNQQNRIRLKQSDLQHRRTPSPSSQNT---HHKSVHIYRQP 223
           E   +Q +++ +   ++ RRTPSPSS++    HH+  H+   P
Sbjct: 643 ERVEEQEQVKQEDHRIEPRRTPSPSSEHRSPHHHRHSHMGYPP 685



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>DGKB_RAT (P49621) Diacylglycerol kinase beta (EC 2.7.1.107) (Diglyceride|
           kinase beta) (DGK-beta) (DAG kinase beta) (90 kDa
           diacylglycerol kinase)
          Length = 801

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +1

Query: 166 AFSKQPKHTSQKCAHLPPTSSMDQVTSAQNDAISFHCWKRASAPHRSSKHFAQATQFVGL 345
           +F K   H  ++CA  PP+     V S +N  +  H W   + P +  K       + GL
Sbjct: 275 SFCKYTVH--ERCARAPPSCIKTYVKSKKNTDVMHHYWVEGNCPTKCDKCHKTVKCYQGL 332



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>GAPN_PEA (P81406) NADP-dependent glyceraldehyde-3-phosphate dehydrogenase|
           (EC 1.2.1.9) (Non-phosphorylating glyceraldehyde
           3-phosphate dehydrogenase) (Glyceraldehyde-3-phosphate
           dehydrogenase [NADP+]) (Triosephosphate dehydrogenase)
          Length = 496

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 172 SKQPKHTSQKCAHLPPTSSMDQVTSAQNDAISFHCWKRASAPHRSS 309
           +++P++  Q C+       MD   SAQ        WKRA   H+++
Sbjct: 40  TRKPQYKVQACSQEEVNKVMDSAKSAQKSWAKTPLWKRAELLHKAA 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,850,188
Number of Sequences: 219361
Number of extensions: 1317033
Number of successful extensions: 3600
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3600
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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