ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1349_HAEIN (P45173) Protein HI1349 32 0.59
2KUP2_BIFLO (Q8G7Q3) Probable potassium transport system protein ... 30 2.3

>Y1349_HAEIN (P45173) Protein HI1349|
          Length = 160

 Score = 32.0 bits (71), Expect = 0.59
 Identities = 17/39 (43%), Positives = 28/39 (71%)
 Frame = +2

Query: 254 KIKQDSAPRVSDSRDCISNTIMIKITVIRQQRSILSPAN 370
           +IK+D A  VS++++C+S T+    T++ QQR IL+ AN
Sbjct: 90  RIKEDIA--VSEAQECLSGTLQGLKTLLDQQREILAFAN 126



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>KUP2_BIFLO (Q8G7Q3) Probable potassium transport system protein kup 2|
          Length = 736

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -1

Query: 387 LPCLPMLAGERMLRCCLMTVIFIIMVFDIQSRESETLG 274
           LP L  L  E      ++TV+ I+++F +QSR +E++G
Sbjct: 120 LPPLEGLFDENPSLTLMITVVIIVILFSVQSRGTESIG 157


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,912,571
Number of Sequences: 219361
Number of extensions: 1046457
Number of successful extensions: 2167
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2167
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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