ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl20b08 |
|---|---|
| Clone Library Name | barley_pub |
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 100 bits (248), Expect = 2e-21 Identities = 52/66 (78%), Positives = 52/66 (78%) Frame = -2 Query: 441 SCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPL 262 SCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHL DIPL Sbjct: 986 SCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPL 1045 Query: 261 VSVYFR 244 VSVYFR Sbjct: 1046 VSVYFR 1051
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 100 bits (248), Expect = 2e-21 Identities = 52/66 (78%), Positives = 52/66 (78%) Frame = -2 Query: 441 SCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPL 262 SCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHL DIPL Sbjct: 986 SCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPL 1045 Query: 261 VSVYFR 244 VSVYFR Sbjct: 1046 VSVYFR 1051
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 86.3 bits (212), Expect = 3e-17 Identities = 43/66 (65%), Positives = 49/66 (74%) Frame = -2 Query: 441 SCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPL 262 SCGTSLLYN+MF RHK+RL +KVVD+AREVAK++VP YRRHL DIPL Sbjct: 988 SCGTSLLYNNMFARHKDRLTKKVVDIAREVAKVDVPEYRRHLDIGVACEDEDENDVDIPL 1047 Query: 261 VSVYFR 244 VSVYFR Sbjct: 1048 VSVYFR 1053
>UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment)| Length = 205 Score = 38.9 bits (89), Expect = 0.006 Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 2/44 (4%) Frame = -2 Query: 441 SCGTSLLYNSMFP--RHKERLDRKVVDVAREVAKMEVPSYRRHL 316 S G SLLY S FP + K+RL K+ + +EV+K EVPS+ ++L Sbjct: 139 SYGVSLLYASFFPPKKVKDRLGLKLTSLIKEVSKKEVPSHVKNL 182
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 32.0 bits (71), Expect = 0.70 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = -2 Query: 441 SCGTSLLYNSMFPRHK--ERLDRKVVDVAREVAKMEVPSYRRHL 316 S G SLLY + P K ERL K+ ++ ++ K ++ +R+HL Sbjct: 946 SSGVSLLYANFQPPKKLAERLPLKISELVEQITKKKLEPFRKHL 989
>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1| Length = 1024 Score = 32.0 bits (71), Expect = 0.70 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%) Frame = -2 Query: 441 SCGTSLLYNSMFP--RHKERLDRKVVDVAREVAKMEVPSY 328 S G SLLY S FP + KERL+ + + + V K ++P++ Sbjct: 958 SYGVSLLYASFFPPKKLKERLNLPITQLVKLVTKKDIPAH 997
>SENP7_HUMAN (Q9BQF6) Sentrin-specific protease 7 (EC 3.4.22.-)| (Sentrin/SUMO-specific protease SENP7) (SUMO-1-specific protease 2) Length = 984 Score = 31.6 bits (70), Expect = 0.91 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 6/97 (6%) Frame = +1 Query: 151 QLTVTNATHDLSVDQA*PTTRSCEHR*SASSAEVDRHKRDVDIVVIVILTGHHDVEMTPV 330 +LT++NAT S + S+ E + +DIV I L + E+ + Sbjct: 309 ELTLSNATKSAS---------------AGSTTETVEYSNSIDIVGISSLVEKDENELNTI 353 Query: 331 RGHLHLGHLPGNINYLSVKPFLV------PGEHRVVE 423 + GH GN + +S +P +V P EH+ E Sbjct: 354 EKPILRGHNEGNQSLISAEPIVVSSDEEGPVEHKSSE 390
>FUT4_BOVIN (Q8HZR3) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV) (Fuc-TIV) Length = 398 Score = 30.8 bits (68), Expect = 1.6 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 Query: 333 RAPPSWPPPWQHQLP 377 + PP WPPPW Q+P Sbjct: 112 KGPPDWPPPWGVQMP 126
>UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 654 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +1 Query: 268 DVDIVVIVILTGHHDVEMTPVRGHLHLG 351 D+DI+ + I GH V + VRG HLG Sbjct: 268 DIDILAVAIKGGHACVNLAMVRGGRHLG 295
>SYY2_BACCZ (Q631P9) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 419 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +1 Query: 325 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 441 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>SYY2_BACC1 (Q72Y10) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 419 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +1 Query: 325 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 441 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>SYY2_BACAN (Q81XC6) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 419 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +1 Query: 325 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 441 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>XERD_RICPR (Q9ZDG8) Tyrosine recombinase xerD| Length = 311 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +1 Query: 274 DIVVIVILTGHHDVEMTPVRGHLHLGHL 357 D+ VI L GH D+ T + HLH HL Sbjct: 267 DLRVIQELLGHADISTTQIYTHLHTNHL 294
>SYY2_BACCR (Q815S0) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 420 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +1 Query: 325 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 441 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>MURA1_CLOTE (Q899K4) UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (EC| 2.5.1.7) (Enoylpyruvate transferase 1) (UDP-N-acetylglucosamine enolpyruvyl transferase 1) (EPT 1) Length = 421 Score = 29.3 bits (64), Expect = 4.5 Identities = 9/30 (30%), Positives = 20/30 (66%) Frame = -2 Query: 441 SCGTSLLYNSMFPRHKERLDRKVVDVAREV 352 +CG ++ N++ P+H E + K++++ EV Sbjct: 248 ACGGEVIVNNVIPKHLESISAKLIEMGAEV 277
>ACUC_BACSU (P39067) Acetoin utilization protein acuC| Length = 387 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = +3 Query: 321 DAGKRAPPSWPPPWQHQLPFCQAVPCAW 404 D G PP W WQ Q P A+P +W Sbjct: 323 DPGHEIPPEWIVKWQKQCPV--ALPSSW 348 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,512,164 Number of Sequences: 219361 Number of extensions: 1068788 Number of successful extensions: 3018 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2910 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3013 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
