ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 50 0.004
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
3gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare str... 50 0.004
4dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
5gb|AC019127.10| Homo sapiens BAC clone RP11-558B7 from 2, comple... 44 0.23
6gb|AC148919.1| Gallus gallus BAC clone CH261-43B19 from chromoso... 44 0.23
7gb|AC142329.1| Pan troglodytes BAC clone RP43-25D8 from 11, comp... 42 0.91
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
9dbj|D10511.2| Homo sapiens MAT gene for mitochondrial acetoacety... 42 0.91
10dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
11dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
12dbj|AK105465.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.91
13dbj|AK101775.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.91
14emb|CR753890.27| Zebrafish DNA sequence from clone CH211-207D8 i... 42 0.91
15dbj|AP002433.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 0.91
16emb|AL928885.9| Zebrafish DNA sequence from clone CH211-195G24 i... 42 0.91
17emb|BX914197.15| Zebrafish DNA sequence from clone DKEYP-81F11 i... 40 3.6
18emb|CR788310.10| Zebrafish DNA sequence from clone DKEY-74F15 in... 40 3.6
19gb|AC145866.3| Pan troglodytes BAC clone RP43-21B7 from 7, compl... 40 3.6
20gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 3.6
21emb|AL159159.21| Human DNA sequence from clone RP11-88J11 on chr... 40 3.6
22emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P... 40 3.6
23emb|CR391971.7| Zebrafish DNA sequence from clone CH211-260O6 in... 40 3.6
24emb|AL096859.2|ATT6H20 Arabidopsis thaliana DNA chromosome 3, BA... 40 3.6
25emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 i... 40 3.6
26emb|CR548622.8| Zebrafish DNA sequence from clone DKEY-189A9 in ... 40 3.6
27emb|CR385085.9| Zebrafish DNA sequence from clone CH211-195A16, ... 40 3.6
28emb|CR318610.8| Zebrafish DNA sequence from clone CH211-14B14 in... 40 3.6
29emb|BX530079.19| Zebrafish DNA sequence from clone DKEY-51A16 in... 40 3.6
30gb|AC120338.4| Homo sapiens X BAC RP11-791N19 (Roswell Park Canc... 40 3.6
31gb|AC068305.30|AC068305 Homo sapiens 12 BAC RP11-557F20 (Roswell... 40 3.6
32emb|BX294395.15| Zebrafish DNA sequence from clone CH211-220B11 ... 40 3.6
33emb|BX296526.5| Zebrafish DNA sequence from clone DKEY-229D2 in ... 40 3.6
34emb|BX005463.5| Zebrafish DNA sequence from clone CH211-177H19 i... 40 3.6
35gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete se... 40 3.6
36emb|BX649231.4| Zebrafish DNA sequence from clone DKEY-225H23 in... 40 3.6
37emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in... 40 3.6
38gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 3.6
39emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 3.6 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 189      caaactcatgaaaatatgctgaatgaata 217
                |||||||||||| ||||||||||||||||
Sbjct: 12284753 caaactcatgaacatatgctgaatgaata 12284725
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 189      caaactcatgaaaatatgctgaatgaata 217
                |||||||||||| ||||||||||||||||
Sbjct: 12281516 caaactcatgaacatatgctgaatgaata 12281488
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>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0029K10, from chromosome 3, complete sequence
          Length = 135940

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 189   caaactcatgaaaatatgctgaatgaata 217
             |||||||||||| ||||||||||||||||
Sbjct: 54286 caaactcatgaacatatgctgaatgaata 54258
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>dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097C16, full
            insert sequence
          Length = 3171

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 189  caaactcatgaaaatatgctgaatgaata 217
            |||||||||||| ||||||||||||||||
Sbjct: 2992 caaactcatgaacatatgctgaatgaata 2964
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>gb|AC019127.10| Homo sapiens BAC clone RP11-558B7 from 2, complete sequence
          Length = 105118

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 113   acaaggcaagacagaattatct 134
             ||||||||||||||||||||||
Sbjct: 27691 acaaggcaagacagaattatct 27712
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>gb|AC148919.1| Gallus gallus BAC clone CH261-43B19 from chromosome unknown, complete
             sequence
          Length = 163278

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 139   tgaaacaattctctgacttcta 160
             ||||||||||||||||||||||
Sbjct: 52897 tgaaacaattctctgacttcta 52876
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>gb|AC142329.1| Pan troglodytes BAC clone RP43-25D8 from 11, complete sequence
          Length = 188643

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 185   agcacaaactcatgaaaatat 205
             |||||||||||||||||||||
Sbjct: 60366 agcacaaactcatgaaaatat 60346
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 130      tatctaatatgaaacaattctctgacttc 158
                ||||||||||| ||||| |||||||||||
Sbjct: 32458180 tatctaatatggaacaactctctgacttc 32458152
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>dbj|D10511.2| Homo sapiens MAT gene for mitochondrial acetoacetyl-CoA thiolase,
           complete cds
          Length = 4392

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 185 agcacaaactcatgaaaatat 205
           |||||||||||||||||||||
Sbjct: 627 agcacaaactcatgaaaatat 607
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>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665A11
          Length = 166421

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 130   tatctaatatgaaacaattctctgacttc 158
             ||||||||||| ||||| |||||||||||
Sbjct: 45701 tatctaatatggaacaactctctgacttc 45673
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>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1143G03
          Length = 137770

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 130    tatctaatatgaaacaattctctgacttc 158
              ||||||||||| ||||| |||||||||||
Sbjct: 137677 tatctaatatggaacaactctctgacttc 137649
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>dbj|AK105465.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-126-A03, full
            insert sequence
          Length = 1761

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 130  tatctaatatgaaacaattctctgacttc 158
            ||||||||||| ||||| |||||||||||
Sbjct: 1630 tatctaatatggaacaactctctgacttc 1602
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>dbj|AK101775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064M23, full
            insert sequence
          Length = 3155

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 130  tatctaatatgaaacaattctctgacttc 158
            ||||||||||| ||||| |||||||||||
Sbjct: 3047 tatctaatatggaacaactctctgacttc 3019
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>emb|CR753890.27| Zebrafish DNA sequence from clone CH211-207D8 in linkage group 9,
            complete sequence
          Length = 201771

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 45   ggtacaacaacacatgcaaat 65
            |||||||||||||||||||||
Sbjct: 1138 ggtacaacaacacatgcaaat 1118
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>dbj|AP002433.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-144G7, complete
              sequence
          Length = 165164

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 185    agcacaaactcatgaaaatat 205
              |||||||||||||||||||||
Sbjct: 105823 agcacaaactcatgaaaatat 105803
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>emb|AL928885.9| Zebrafish DNA sequence from clone CH211-195G24 in linkage group 3,
              complete sequence
          Length = 196857

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 126    gaattatctaatatgaaacaa 146
              |||||||||||||||||||||
Sbjct: 160355 gaattatctaatatgaaacaa 160375
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>emb|BX914197.15| Zebrafish DNA sequence from clone DKEYP-81F11 in linkage group 11,
              complete sequence
          Length = 198600

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    atgaaaatatgctgaatgaa 215
              ||||||||||||||||||||
Sbjct: 104691 atgaaaatatgctgaatgaa 104710
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>emb|CR788310.10| Zebrafish DNA sequence from clone DKEY-74F15 in linkage group 2,
           complete sequence
          Length = 244700

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 53  aacacatgcaaataagcata 72
           ||||||||||||||||||||
Sbjct: 325 aacacatgcaaataagcata 306
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>gb|AC145866.3| Pan troglodytes BAC clone RP43-21B7 from 7, complete sequence
          Length = 189814

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 175   agacagcaagagcacaaactcatg 198
             ||||||||||||||||| ||||||
Sbjct: 91746 agacagcaagagcacaagctcatg 91723
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 178     cagcaagagcacaaactcat 197
               ||||||||||||||||||||
Sbjct: 2367821 cagcaagagcacaaactcat 2367802
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>emb|AL159159.21| Human DNA sequence from clone RP11-88J11 on chromosome 13 Contains the
             3' end of the CDK8 gene for cyclin-dependent kinase 8,
             complete sequence
          Length = 144626

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 185   agcacaaactcatgaaaatatgct 208
             ||||||||| ||||||||||||||
Sbjct: 65285 agcacaaacccatgaaaatatgct 65308
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>emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P3 on chromosome 10 Contains a
              novel gene, the 5' end of the TCF8 gene for transcription
              factor 8 (represses interleukin 2 expression)
              (BZP,ZEB,ZEB1,AREB6,ZFHEP,NIL-2A,ZFHX1A,NIL-2-A), a
              pseudogene similar to part of serine palmitoyltransferase,
              long chain base subunit 1 (SPTLC1) (HSAN, HSN1, LBC1, LCB1,
              SPT1, SPTI) and two CpG islands, complete sequence
          Length = 187517

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    ctgaatgaataagttaggca 226
              ||||||||||||||||||||
Sbjct: 174428 ctgaatgaataagttaggca 174447
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>emb|CR391971.7| Zebrafish DNA sequence from clone CH211-260O6 in linkage group 21,
            complete sequence
          Length = 129478

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  atgaaaatatgctgaatgaa 215
            ||||||||||||||||||||
Sbjct: 2764 atgaaaatatgctgaatgaa 2745
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>emb|AL096859.2|ATT6H20 Arabidopsis thaliana DNA chromosome 3, BAC clone T6H20
          Length = 98461

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 125   agaattatctaatatgaaacaatt 148
             |||||| |||||||||||||||||
Sbjct: 48421 agaattttctaatatgaaacaatt 48398
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>emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 in linkage group 21,
             complete sequence
          Length = 147564

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   atgaaaatatgctgaatgaa 215
             ||||||||||||||||||||
Sbjct: 41288 atgaaaatatgctgaatgaa 41269
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>emb|CR548622.8| Zebrafish DNA sequence from clone DKEY-189A9 in linkage group 11,
             complete sequence
          Length = 137993

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   atgaaaatatgctgaatgaa 215
             ||||||||||||||||||||
Sbjct: 16675 atgaaaatatgctgaatgaa 16694
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>emb|CR385085.9| Zebrafish DNA sequence from clone CH211-195A16, complete sequence
          Length = 211060

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    atgaaaatatgctgaatgaa 215
              ||||||||||||||||||||
Sbjct: 156937 atgaaaatatgctgaatgaa 156956
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>emb|CR318610.8| Zebrafish DNA sequence from clone CH211-14B14 in linkage group 5,
              complete sequence
          Length = 164564

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    atgaaaatatgctgaatgaa 215
              ||||||||||||||||||||
Sbjct: 152626 atgaaaatatgctgaatgaa 152607
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>emb|BX530079.19| Zebrafish DNA sequence from clone DKEY-51A16 in linkage group 13,
              complete sequence
          Length = 166397

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    atgaaaatatgctgaatgaa 215
              ||||||||||||||||||||
Sbjct: 141164 atgaaaatatgctgaatgaa 141145
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>gb|AC120338.4| Homo sapiens X BAC RP11-791N19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109001

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   aaaatatgctgaatgaataa 218
             ||||||||||||||||||||
Sbjct: 94435 aaaatatgctgaatgaataa 94454
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>gb|AC068305.30|AC068305 Homo sapiens 12 BAC RP11-557F20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 131811

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   ctgaatgaataagttaggca 226
             ||||||||||||||||||||
Sbjct: 54484 ctgaatgaataagttaggca 54503
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>emb|BX294395.15| Zebrafish DNA sequence from clone CH211-220B11 in linkage group 5,
             complete sequence
          Length = 213232

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   atgaaaatatgctgaatgaa 215
             ||||||||||||||||||||
Sbjct: 65218 atgaaaatatgctgaatgaa 65237
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>emb|BX296526.5| Zebrafish DNA sequence from clone DKEY-229D2 in linkage group 5,
             complete sequence
          Length = 179086

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   atgaaaatatgctgaatgaa 215
             ||||||||||||||||||||
Sbjct: 19761 atgaaaatatgctgaatgaa 19742
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>emb|BX005463.5| Zebrafish DNA sequence from clone CH211-177H19 in linkage group 6,
             complete sequence
          Length = 163804

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   atgaaaatatgctgaatgaa 215
             ||||||||||||||||||||
Sbjct: 47713 atgaaaatatgctgaatgaa 47694
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>gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete sequence
          Length = 198084

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   ctgaatgaataagttaggca 226
             ||||||||||||||||||||
Sbjct: 56841 ctgaatgaataagttaggca 56860
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>emb|BX649231.4| Zebrafish DNA sequence from clone DKEY-225H23 in linkage group 20,
             complete sequence
          Length = 153569

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   atgaaaatatgctgaatgaa 215
             ||||||||||||||||||||
Sbjct: 62267 atgaaaatatgctgaatgaa 62248
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>emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in linkage group 23,
              complete sequence
          Length = 178148

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    atgaaaatatgctgaatgaa 215
              ||||||||||||||||||||
Sbjct: 129196 atgaaaatatgctgaatgaa 129177
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 251    agcagacccagatttttacc 270
              ||||||||||||||||||||
Sbjct: 165101 agcagacccagatttttacc 165120
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 2       atacggtgtattatacgttg 21
               ||||||||||||||||||||
Sbjct: 3003488 atacggtgtattatacgttg 3003507


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,407,271
Number of Sequences: 3902068
Number of extensions: 2407271
Number of successful extensions: 47734
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47596
Number of HSP's gapped (non-prelim): 138
length of query: 276
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 254
effective length of database: 17,147,199,772
effective search space: 4355388742088
effective search space used: 4355388742088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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