>PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box|
           domain protein 14)
          Length = 632

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 23/55 (41%), Positives = 33/55 (60%)
 Frame = -3

Query: 439 GSARGKENAAAALLQLCTNSNRFCSIVLQEGAVPPLVALSQSGTPRAREKAQALL 275
           GS R +ENAAA L  LC  +    ++  + GA   L  L+++GT RA+ KA +LL
Sbjct: 563 GSPRNRENAAAILWYLCIGNIERLNVAREVGADVALKELTENGTDRAKRKAASLL 617



 Score = 32.3 bits (72), Expect = 0.53
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = -3

Query: 439 GSARGKENAAAALLQLCTNSNRFCSIVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRS 260
           G+ RGK++AA A+  LC       S  ++ G V PL  L +       ++A A+L+   +
Sbjct: 481 GTRRGKKDAATAIFNLCIYQGN-KSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILST 539

Query: 259 QRHGNSA 239
            + G +A
Sbjct: 540 NQEGKTA 546



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = -3

Query: 430 RGKENAAAALLQLCTNSNRFCSIVLQEGAVPPLVALSQSGTPRAREKAQALL 275
           R +E++  ALL L  N     +IV   GA+  +V + ++G+  ARE A A L
Sbjct: 402 RTQEHSVTALLNLSINEGNKGAIV-DAGAITDIVEVLKNGSMEARENAAATL 452



 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -3

Query: 439 GSARGKENAAAALLQLCTNSNRFCSIVLQEGAVPPLVALSQSGTPRAREKA 287
           GS   +ENAAA L  L        +I    GA+  L++L + GT R ++ A
Sbjct: 440 GSMEARENAAATLFSLSVIDENKVAIG-AAGAIQALISLLEEGTRRGKKDA 489

>SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (Cell|
           death-related protein SPL11)
          Length = 694

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = -3

Query: 439 GSARGKENAAAALLQLCT---NSNRFCSIVLQEGAVPPLVALSQSGTPRAREKAQALLSY 269
           GS RGK++AAAAL  LC    N  R     ++ G VP ++ L  + T    ++A A+LS 
Sbjct: 503 GSQRGKKDAAAALFNLCIYQGNKGR----AIRAGLVPLIMGLVTNPTGALMDEAMAILSI 558

Query: 268 FRSQRHGNSA 239
             S   G +A
Sbjct: 559 LSSHPEGKAA 568



 Score = 38.9 bits (89), Expect = 0.006
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -3

Query: 439 GSARGKENAAAALLQLCTNSNRFCSIVLQE--GAVPPLVALSQSGTPRAREKAQALL 275
           G+ R +ENAAA +L LC+  +    +   +  G + PL  L+ +GT R + KA  LL
Sbjct: 585 GTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLL 641



 Score = 35.4 bits (80), Expect = 0.063
 Identities = 21/52 (40%), Positives = 31/52 (59%)
 Frame = -3

Query: 430 RGKENAAAALLQLCTNSNRFCSIVLQEGAVPPLVALSQSGTPRAREKAQALL 275
           R +E+A  ALL L  + +   SI+   GAVP +V + ++G+  ARE A A L
Sbjct: 424 RTQEHAVTALLNLSIHEDNKASII-SSGAVPSIVHVLKNGSMEARENAAATL 474



 Score = 31.6 bits (70), Expect = 0.91
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -3

Query: 439 GSARGKENAAAALLQLCTNSNRFCSIVLQEGAVPPLVALSQSGTPRAREKAQALL 275
           GS   +ENAAA L  L    + +   +   GA+P LV L   G+ R ++ A A L
Sbjct: 462 GSMEARENAAATLFSLSV-IDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAAL 515

>POCR_SALTY (Q05587) Regulatory protein pocR|
          Length = 303

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 132 LFVYSQIERDCAHHPSHATYCRARDECGRWLSSLLSRWCI 13
           LF ++   +    HP H+T CR  D CG   +S   + CI
Sbjct: 40  LFNFTPFCQLMRQHPQHSTRCRMSDRCGGLEASKSDQPCI 79

>MURE_CHRVO (Q7NPZ4) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 493

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = -3

Query: 421 ENAAAALLQLCTNSNRFCSIVLQEGAVPPLVALSQSGTPRAREKAQALLSYFR 263
           ++AAA + ++     R  S+    GA  PLV +  + TP A EKA A LS  R
Sbjct: 321 QDAAAVMARIQPARGRMQSV---GGAHEPLVVIDYAHTPDALEKALATLSEIR 370

>VPS41_YEAST (P38959) Vacuolar assembly protein VPS41 (Vacuolar morphogenesis|
           protein VAM2)
          Length = 992

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 87  MDDEHNLSQFDYKQTVHSASQSTNLTA 167
           MDD  N++Q+D+K+ ++S +  +N  A
Sbjct: 182 MDDPQNITQYDFKRPINSVALHSNFQA 208

>V012_FOWPV (Q9J5I9) Putative ankyrin repeat protein FPV012|
          Length = 331

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -3

Query: 409 AALLQLCTNSNRFCSIVLQEGAVPPLVALSQSGTPRAREKAQALLSYFR 263
           A L+ +CT   + C+++L EGA P  V      TP  R     ++SY+R
Sbjct: 81  ALLIAICTGDIKTCNVLLDEGANPNYVN-KYGITPLVR-----IISYYR 123

>HMX3_MOUSE (P42581) Homeobox protein HMX3 (Homeobox protein Nkx-5.1)|
          Length = 458

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 397 QLCTNSNRFCSIVLQEGAVPPLVALSQSGTPRA 299
           Q CT+S++    ++  GAV PL+A S S  P A
Sbjct: 108 QTCTHSSKIAYTLVPNGAVRPLLAWSYSIPPSA 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,718,837
Number of Sequences: 219361
Number of extensions: 937877
Number of successful extensions: 2337
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2337
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)