ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl20b04 |
|---|---|
| Clone Library Name | barley_pub |
>NELL1_RAT (Q62919) Protein kinase C-binding protein NELL1 precursor (NEL-like| protein 1) Length = 810 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = -1 Query: 219 FHGQPLASSYSFVAR*LNECRGGVYI*IEAYC--FSCSLMDEYIP 91 + G+ LA + + ECRGGV + I C +CS D +P Sbjct: 337 YGGKVLAEGQRILTKTCRECRGGVLVKITEACPPLNCSAKDHILP 381
>NELL1_HUMAN (Q92832) Protein kinase C-binding protein NELL1 precursor (NEL-like| protein 1) (Nel-related protein 1) Length = 810 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = -1 Query: 219 FHGQPLASSYSFVAR*LNECRGGVYI*IEAYC--FSCSLMDEYIP 91 + G+ LA + + ECRGGV + I C +CS D +P Sbjct: 337 YGGKVLAEGQRILTKSCRECRGGVLVKITEMCPPLNCSEKDHILP 381
>CNGA1_BOVIN (Q00194) cGMP-gated cation channel alpha 1 (CNG channel alpha 1)| (CNG-1) (CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic nucleotide gated channel, photoreceptor) (Cyclic-nucleotide-gated cation channel 1) (Rod photoreceptor cGMP-gate Length = 690 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +3 Query: 81 RKCKVYIHPSGNRKNNMPQSICKPLLYIHLIILRRSCRNLLRAD 212 +K V I PSGN N I P++Y +I+ R+C + L++D Sbjct: 150 KKEVVVIDPSGNTYYNWLFCITLPVMYNWTMIIARACFDELQSD 193
>CUL2_PONPY (Q5RCF3) Cullin-2 (CUL-2)| Length = 745 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/48 (27%), Positives = 25/48 (52%) Frame = +3 Query: 84 KCKVYIHPSGNRKNNMPQSICKPLLYIHLIILRRSCRNLLRADRGNHL 227 +C+ Y+HPS K + + ++ HL L C N++R ++ N + Sbjct: 249 RCRKYLHPSSYTK--VIHECQQRMVADHLQFLHAECHNIIRQEKKNDM 294
>CUL2_HUMAN (Q13617) Cullin-2 (CUL-2)| Length = 745 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/48 (27%), Positives = 25/48 (52%) Frame = +3 Query: 84 KCKVYIHPSGNRKNNMPQSICKPLLYIHLIILRRSCRNLLRADRGNHL 227 +C+ Y+HPS K + + ++ HL L C N++R ++ N + Sbjct: 249 RCRKYLHPSSYTK--VIHECQQRMVADHLQFLHAECHNIIRQEKKNDM 294
>NAS15_CAEEL (P55115) Zinc metalloproteinase nas-15 precursor (EC 3.4.24.21)| (Nematode astacin 15) Length = 571 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +1 Query: 49 HVCISFHPKQAANVRYIFIHQGTG 120 H CI + PK+AA+V Y+ I+ G Sbjct: 154 HTCIRWVPKEAADVNYVHIYPDRG 177
>CNGA1_RAT (Q62927) cGMP-gated cation channel alpha 1 (CNG channel alpha 1)| (CNG-1) (CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic nucleotide gated channel, photoreceptor) (Cyclic-nucleotide-gated cation channel 1) (Rod photoreceptor cGMP-gated Length = 683 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +3 Query: 81 RKCKVYIHPSGNRKNNMPQSICKPLLYIHLIILRRSCRNLLRAD 212 +K V I PSGN N I P++Y +I+ R+C + L++D Sbjct: 143 KKEVVVIDPSGNMYYNWLFCITLPVMYNWTMIIARACFDELQSD 186
>CNGA1_MOUSE (P29974) cGMP-gated cation channel alpha 1 (CNG channel alpha 1)| (CNG-1) (CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic nucleotide gated channel, photoreceptor) (Cyclic-nucleotide-gated cation channel 1) (Rod photoreceptor cGMP-gate Length = 684 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +3 Query: 81 RKCKVYIHPSGNRKNNMPQSICKPLLYIHLIILRRSCRNLLRAD 212 +K V I PSGN N I P++Y +I+ R+C + L++D Sbjct: 144 KKEVVVIDPSGNTYYNWLFCITLPVMYNWTMIIARACFDELQSD 187
>CNGA1_HUMAN (P29973) cGMP-gated cation channel alpha 1 (CNG channel alpha 1)| (CNG-1) (CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic nucleotide gated channel, photoreceptor) (Cyclic-nucleotide-gated cation channel 1) (Rod photoreceptor cGMP-gate Length = 686 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +3 Query: 81 RKCKVYIHPSGNRKNNMPQSICKPLLYIHLIILRRSCRNLLRAD 212 +K V I PSGN N I P++Y +++ R+C + L++D Sbjct: 148 KKEVVVIDPSGNTYYNWLFCITLPVMYNWTMVIARACFDELQSD 191
>SSGP_VOLCA (P21997) Sulfated surface glycoprotein 185 precursor (SSG 185)| Length = 485 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Frame = +1 Query: 55 CISFHPKQ------AANVRYIFIHQGTGKTICLNLYVNPSSTFI*SSCDEAVGTC*GLTV 216 C+S P ANV + I G G+ +CL + V+ ++ ++C+ +G C + Sbjct: 331 CVSRSPSSYPWRVTVANVSAVTISGGAGERVCLKISVDNAAA---ATCNNGLGGCCSDGL 387 Query: 217 ETISYSLDG 243 E + +G Sbjct: 388 EKVELFANG 396
>CFTR_TRIVU (Q5D1Z7) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1478 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 3/31 (9%) Frame = -2 Query: 359 LFSLAWDIVIP---CGAILLATLLFFQQWLG 276 L L WD++ CG L L FQ WLG Sbjct: 211 LMGLLWDLLQASAFCGLAFLVVLALFQAWLG 241
>Y2204_WOLSU (Q7MQL4) Hypothetical UPF0324 membrane protein WS2204| Length = 333 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -2 Query: 353 SLAWDIVIPCGAILLATLLFFQQWL 279 ++ W ++ GAILL +L FF WL Sbjct: 251 AIPWFALLFLGAILLGSLFFFPSWL 275
>CFTR_DIDMA (Q2QL74) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1482 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 3/31 (9%) Frame = -2 Query: 359 LFSLAWDIVIP---CGAILLATLLFFQQWLG 276 L L WD++ CG L L FQ WLG Sbjct: 211 LMGLLWDLLQASAFCGLAFLIVLALFQAWLG 241
>PEX6_PICPA (P33289) Peroxisomal biogenesis factor 6 (Peroxin-6) (Peroxisome| biosynthesis protein PAS5) Length = 1165 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +3 Query: 3 NCEPCLIFVSFCRIHACMYKFSPQTGRKCKVYIHPSGNRKNNMPQSI 143 NCE C + + RIHA P T K +Y++P + N P+ + Sbjct: 318 NCESCPVQYRYIRIHAFT---DPNTYEKGCIYLNPILSFNLNNPKIV 361
>K6PF_HAEDU (Q8GNC1) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 324 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -1 Query: 309 GDAPVLSAVARGRLLPLLQEQEAVERIRDGFHG 211 GDAP ++A RG + L E + ++DG++G Sbjct: 15 GDAPGMNAAIRGVVRAALNEGLEIFGVQDGYYG 47
>MPRB_PIG (Q865K9) Membrane progestin receptor beta (mPR beta) (Progestin and| adipoQ receptor family member VIII) Length = 354 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = -1 Query: 150 VYI*IEAYCFSCSLMDEYIPYICGLFG 70 V+ + AY FSC + ++Y P C + G Sbjct: 253 VFFLVSAYFFSCPVPEKYFPGSCDIVG 279 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,828,312 Number of Sequences: 219361 Number of extensions: 1058253 Number of successful extensions: 2681 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2637 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2681 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
