>PRP8_MOUSE (Q99PV0) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)|
          Length = 2335

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 32/54 (59%), Positives = 43/54 (79%)
 Frame = -3

Query: 418  NFMGVKHDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEEGEVAEGDREDTFS 257
            NFMGV+HDP MKY ++L  P++FYHE HRP+HFL F+ ++EGEV   DRED ++
Sbjct: 2282 NFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335

>PRP8_HUMAN (Q6P2Q9) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)|
            (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220)
          Length = 2335

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 32/54 (59%), Positives = 43/54 (79%)
 Frame = -3

Query: 418  NFMGVKHDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEEGEVAEGDREDTFS 257
            NFMGV+HDP MKY ++L  P++FYHE HRP+HFL F+ ++EGEV   DRED ++
Sbjct: 2282 NFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335

>PRP8_CAEEL (P34369) Pre-mRNA-splicing factor 8 homolog|
          Length = 2329

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -3

Query: 418  NFMGVKHDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEEG-EVAEGDREDTFS 257
            NF G +  P MK+ + L  P+++YHEDHRP HF  F   ++       DRED F+
Sbjct: 2275 NFQGQRWSPAMKFDVCLSNPKEYYHEDHRPVHFHNFKAFDDPLGTGSADREDAFA 2329

>PRP8_YEAST (P33334) Pre-mRNA-splicing factor 8|
          Length = 2413

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 23/53 (43%), Positives = 31/53 (58%)
 Frame = -3

Query: 415  FMGVKHDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEEGEVAEGDREDTFS 257
            FMG   +    Y+ K G P +FY+E HRP HFL+FS +   E  E ++ D FS
Sbjct: 2361 FMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFSELAGDEELEAEQIDVFS 2413

>EX7L_CHLTR (O84333) Probable exodeoxyribonuclease VII large subunit (EC|
           3.1.11.6) (Exonuclease VII large subunit)
          Length = 516

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +3

Query: 63  LYSTVLEGQAYNTRY*SQETENIIQHVTSKLHTSQSSLFKTEQSSL 200
           LY++ L+ +  N ++ +Q + NI+  ++ +LH + +S  +T Q  L
Sbjct: 381 LYTSCLKNELLNLQHHTQHSRNILSQLSRRLHIAIASSQQTHQECL 426

>LUC7L_MOUSE (Q9CYI4) Putative RNA-binding protein Luc7-like 1|
          Length = 371

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 109 SLKRRKTSYNMSRQSYTRHRALYSKLSRAHCR 204
           S +RRK S + SR  Y RHR+     SR H R
Sbjct: 284 SRERRKFSRSRSRDRYRRHRSRSRSHSRGHRR 315


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,730,197
Number of Sequences: 219361
Number of extensions: 821763
Number of successful extensions: 2267
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2266
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)