ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U22450.1|HVU22450 Hordeum vulgare alpha-glucosidase mRNA, com... 547 e-153
2gb|AF118226.1|AF118226 Hordeum vulgare high pI alpha-glucosidase... 456 e-125
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
4dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
5dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
6dbj|AK121588.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
7dbj|AK105449.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
8dbj|AK119824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
9gb|AE004504.1| Pseudomonas aeruginosa PAO1, section 65 of 529 of... 46 0.087
10emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete ... 44 0.34
11gb|AC121882.3| Mus musculus BAC clone RP24-135M19 from chromosom... 42 1.4
12ref|XM_464692.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.4
13ref|XM_464691.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.4
14ref|NM_193402.1| Oryza sativa (japonica cultivar-group), predic... 40 5.4
15gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 5.4
16gb|AF003739.2| Caenorhabditis elegans cosmid M01D7, complete seq... 40 5.4
17gb|AC121148.8| Mus musculus chromosome 3, clone RP24-369K4, comp... 40 5.4
18gb|AC108872.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
19gb|AC137751.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
20gb|AE012485.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 5.4
21gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 5.4
22dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
23dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
24dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
25dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
26dbj|AP004225.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
27dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.4
28dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete... 40 5.4
29dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.4
30dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
31dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
32gb|AY830105.1| Phytophthora infestans gypsy-like retrotransposon... 40 5.4
33gb|AY830104.1| Phytophthora infestans gypsy-like retrotransposon... 40 5.4
34dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
35dbj|AK120193.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
36dbj|AK111379.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
37emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 5.4
38gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
39gb|AC154128.3| Tribolium castaneum BAC T.cast_C36A24 (Clemson U... 40 5.4 
>gb|U22450.1|HVU22450 Hordeum vulgare alpha-glucosidase mRNA, complete cds
          Length = 2738

 Score =  547 bits (276), Expect = e-153
 Identities = 289/292 (98%), Gaps = 1/292 (0%)
 Strand = Plus / Minus

                                                                        
Query: 111  ggctttaatttctcgcctttattcaatcaatgttatggtccatatcacaaattgcctaaa 170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2736 ggctttaatttctcgcctttattcaatcaatgttatggtccatatcacaaattgcctaaa 2677

                                                                        
Query: 171  ttttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccg 230
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2676 ttt-aataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagaccg 2618

                                                                        
Query: 231  ccgatgtgagcgacgccgccgagtcctcctgcgttctggtaccgtgtgccggctgacgag 290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2617 ccgatgtgagcgacgccgccgagtcctcctgcgttctggtaccgtgtgccggctgacgag 2558

                                                                        
Query: 291  ctcgcctccacctccgcgctgttgacgtggacggtgagcttcttcggcgccgccggcgac 350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2557 ctcgcctccacctccgcgctgttgacgtggacggtgagcttcttcggcgccgccggcgac 2498

                                                                
Query: 351  cggtgccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgt 402
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2497 cggtgccccatgagcaccaccttgcttatgaccagtgtcctgctctgtgcgt 2446
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>gb|AF118226.1|AF118226 Hordeum vulgare high pI alpha-glucosidase (AGL97) gene, complete cds
          Length = 7113

 Score =  456 bits (230), Expect = e-125
 Identities = 230/230 (100%)
 Strand = Plus / Minus

                                                                        
Query: 173  ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 232
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7113 ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 7054

                                                                        
Query: 233  gatgtgagcgacgccgccgagtcctcctgcgttctggtaccgtgtgccggctgacgagct 292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7053 gatgtgagcgacgccgccgagtcctcctgcgttctggtaccgtgtgccggctgacgagct 6994

                                                                        
Query: 293  cgcctccacctccgcgctgttgacgtggacggtgagcttcttcggcgccgccggcgaccg 352
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6993 cgcctccacctccgcgctgttgacgtggacggtgagcttcttcggcgccgccggcgaccg 6934

                                                              
Query: 353  gtgccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgt 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6933 gtgccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgt 6884
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                            
Query: 173      ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 232
                |||||||| |||  ||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 27722124 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 27722065

                               
Query: 233      gatgtgagcgacgcc 247
                || ||| || |||||
Sbjct: 27722064 gacgtgcgccacgcc 27722050



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                            
Query: 173      ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 232
                |||||||| |||  ||||||| || |||||||||| |||||||||||||| |||||||| 
Sbjct: 27661916 ttaataggtcatcacgaccttgagatcgaactcctgcccgacgaccagcgtcagcccgct 27661975

                               
Query: 233      gatgtgagcgacgcc 247
                || ||| ||||||||
Sbjct: 27661976 gacgtgcgcgacgcc 27661990



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                        
Query: 336      ggcgccgccggcgaccggtgccccatgagcaccaccttgc 375
                |||| ||||| ||||||| |||||||||||||||||||||
Sbjct: 27662082 ggcggcgccgccgaccggagccccatgagcaccaccttgc 27662121



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 355      gccccatgagcaccaccttg 374
                ||||||||||||||||||||
Sbjct: 27721936 gccccatgagcaccaccttg 27721917



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 286     acgagctcgcctccacctcc 305
               ||||||||||||||||||||
Sbjct: 6990902 acgagctcgcctccacctcc 6990921
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>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1153E06
          Length = 174588

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                         
Query: 173   ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 232
             |||||||| |||  ||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 71379 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 71320

                            
Query: 233   gatgtgagcgacgcc 247
             || ||| || |||||
Sbjct: 71319 gacgtgcgccacgcc 71305



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                         
Query: 173   ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 232
             |||||||| |||  ||||||| || |||||||||| |||||||||||||| |||||||| 
Sbjct: 11171 ttaataggtcatcacgaccttgagatcgaactcctgcccgacgaccagcgtcagcccgct 11230

                            
Query: 233   gatgtgagcgacgcc 247
             || ||| ||||||||
Sbjct: 11231 gacgtgcgcgacgcc 11245



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 336   ggcgccgccggcgaccggtgccccatgagcaccaccttgc 375
             |||| ||||| ||||||| |||||||||||||||||||||
Sbjct: 11337 ggcggcgccgccgaccggagccccatgagcaccaccttgc 11376



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   gccccatgagcaccaccttg 374
             ||||||||||||||||||||
Sbjct: 71191 gccccatgagcaccaccttg 71172
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>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0710B08
          Length = 186991

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                         
Query: 173   ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 232
             |||||||| |||  ||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 24633 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 24574

                            
Query: 233   gatgtgagcgacgcc 247
             || ||| || |||||
Sbjct: 24573 gacgtgcgccacgcc 24559



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   gccccatgagcaccaccttg 374
             ||||||||||||||||||||
Sbjct: 24445 gccccatgagcaccaccttg 24426
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>dbj|AK121588.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037N10, full
            insert sequence
          Length = 2804

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                        
Query: 173  ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 232
            |||||||| |||  ||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 2720 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 2661

                           
Query: 233  gatgtgagcgacgcc 247
            || ||| || |||||
Sbjct: 2660 gacgtgcgccacgcc 2646



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 355  gccccatgagcaccaccttg 374
            ||||||||||||||||||||
Sbjct: 2532 gccccatgagcaccaccttg 2513
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>dbj|AK105449.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-B12, full
            insert sequence
          Length = 2873

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                        
Query: 173  ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 232
            |||||||| |||  ||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 2788 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 2729

                           
Query: 233  gatgtgagcgacgcc 247
            || ||| || |||||
Sbjct: 2728 gacgtgcgccacgcc 2714



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 355  gccccatgagcaccaccttg 374
            ||||||||||||||||||||
Sbjct: 2600 gccccatgagcaccaccttg 2581
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>dbj|AK119824.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-D07, full
            insert sequence
          Length = 2829

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 173  ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 232
            |||||||| |||  ||||||| || |||||||||| |||||||||||||| |||||||| 
Sbjct: 2739 ttaataggtcatcacgaccttgagatcgaactcctgcccgacgaccagcgtcagcccgct 2680

                           
Query: 233  gatgtgagcgacgcc 247
            || ||| ||||||||
Sbjct: 2679 gacgtgcgcgacgcc 2665



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 336  ggcgccgccggcgaccggtgccccatgagcaccaccttgc 375
            |||| ||||| ||||||| |||||||||||||||||||||
Sbjct: 2573 ggcggcgccgccgaccggagccccatgagcaccaccttgc 2534
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>gb|AE004504.1| Pseudomonas aeruginosa PAO1, section 65 of 529 of the complete genome
          Length = 15542

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 335  cggcgccgccggcgaccggtgcc 357
            |||||||||||||||||||||||
Sbjct: 9351 cggcgccgccggcgaccggtgcc 9329
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>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29
          Length = 311000

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 301   cctccgcgctgttgacgtggacggtg 326
             |||||||||||||| |||||||||||
Sbjct: 76865 cctccgcgctgttggcgtggacggtg 76840
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>gb|AC121882.3| Mus musculus BAC clone RP24-135M19 from chromosome 1, complete sequence
          Length = 173376

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 379    tcaccagtgtcctgctctgtg 399
              |||||||||||||||||||||
Sbjct: 124572 tcaccagtgtcctgctctgtg 124552
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>ref|XM_464692.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 990

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 335 cggcgccgccggcgaccggtgccccatg 362
           |||||||||||| |||||| ||||||||
Sbjct: 489 cggcgccgccggggaccggggccccatg 462
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>ref|XM_464691.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2595

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 335 cggcgccgccggcgaccggtgccccatg 362
           |||||||||||| |||||| ||||||||
Sbjct: 384 cggcgccgccggggaccggggccccatg 411
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>ref|NM_193402.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2886

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  cgcctccacctccgcgctgt 312
            ||||||||||||||||||||
Sbjct: 1584 cgcctccacctccgcgctgt 1565
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    ttcttcggcgccgccggcga 349
              ||||||||||||||||||||
Sbjct: 482150 ttcttcggcgccgccggcga 482169
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>gb|AF003739.2| Caenorhabditis elegans cosmid M01D7, complete sequence
          Length = 41179

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   acaaattgcctaaattttaa 176
             ||||||||||||||||||||
Sbjct: 23822 acaaattgcctaaattttaa 23841
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>gb|AC121148.8| Mus musculus chromosome 3, clone RP24-369K4, complete sequence
          Length = 209365

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    caaattgcctaaattttaat 177
              ||||||||||||||||||||
Sbjct: 125400 caaattgcctaaattttaat 125381
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>gb|AC108872.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0079P23, complete sequence
          Length = 125090

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 338   cgccgccggcgaccggtgcc 357
             ||||||||||||||||||||
Sbjct: 37939 cgccgccggcgaccggtgcc 37920
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>gb|AC137751.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0014E11,
              complete sequence
          Length = 199348

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 338    cgccgccggcgaccggtgcc 357
              ||||||||||||||||||||
Sbjct: 186156 cgccgccggcgaccggtgcc 186137
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>gb|AE012485.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 393
            of 460 of the complete genome
          Length = 12189

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 217  ccagcgacagcccgccgatg 236
            ||||||||||||||||||||
Sbjct: 1836 ccagcgacagcccgccgatg 1855
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 217     ccagcgacagcccgccgatg 236
               ||||||||||||||||||||
Sbjct: 4397098 ccagcgacagcccgccgatg 4397117
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 338      cgccgccggcgaccggtgcc 357
                ||||||||||||||||||||
Sbjct: 25099475 cgccgccggcgaccggtgcc 25099456



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 338      cgccgccggcgaccggtgcc 357
                ||||||||||||||||||||
Sbjct: 25057108 cgccgccggcgaccggtgcc 25057089
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 335     cggcgccgccggcgaccggtgccccatg 362
               |||||||||||| |||||| ||||||||
Sbjct: 6731971 cggcgccgccggggaccggggccccatg 6731944
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      cgcctccacctccgcgctgt 312
                ||||||||||||||||||||
Sbjct: 20626197 cgcctccacctccgcgctgt 20626178
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>dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0024F24
          Length = 172642

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   cgcctccacctccgcgctgt 312
             ||||||||||||||||||||
Sbjct: 88173 cgcctccacctccgcgctgt 88154
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>dbj|AP004225.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1156H12
          Length = 159509

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    cgcctccacctccgcgctgt 312
              ||||||||||||||||||||
Sbjct: 150019 cgcctccacctccgcgctgt 150000
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 232     cgatgtgagcgacgccgccg 251
               ||||||||||||||||||||
Sbjct: 6175848 cgatgtgagcgacgccgccg 6175867
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>dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete genome
          Length = 351911

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    gcgccgccggcgaccggtgc 356
              ||||||||||||||||||||
Sbjct: 240810 gcgccgccggcgaccggtgc 240829
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 335     cggcgccgccggcgaccggt 354
               ||||||||||||||||||||
Sbjct: 2763090 cggcgccgccggcgaccggt 2763071
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>dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0080E19
          Length = 152755

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   acgagctcgcctccacctcc 305
             ||||||||||||||||||||
Sbjct: 11689 acgagctcgcctccacctcc 11708
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>dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0061B07
          Length = 124766

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   acgagctcgcctccacctcc 305
             ||||||||||||||||||||
Sbjct: 50329 acgagctcgcctccacctcc 50348
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>gb|AY830105.1| Phytophthora infestans gypsy-like retrotransposon GypsyPi-3b,
            complete sequence
          Length = 7348

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 213  acgaccagcgacagcccgccgatg 236
            ||||||||||| ||||||||||||
Sbjct: 2393 acgaccagcgatagcccgccgatg 2416
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>gb|AY830104.1| Phytophthora infestans gypsy-like retrotransposon GypsyPi-3a,
            complete sequence
          Length = 8977

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 213  acgaccagcgacagcccgccgatg 236
            ||||||||||| ||||||||||||
Sbjct: 3118 acgaccagcgatagcccgccgatg 3141
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>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1131G07
          Length = 133992

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 335   cggcgccgccggcgaccggtgccccatg 362
             |||||||||||| |||||| ||||||||
Sbjct: 53024 cggcgccgccggggaccggggccccatg 52997
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>dbj|AK120193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035P19, full
           insert sequence
          Length = 2499

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 acgagctcgcctccacctcc 305
           ||||||||||||||||||||
Sbjct: 52  acgagctcgcctccacctcc 71
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>dbj|AK111379.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-B05, full
           insert sequence
          Length = 990

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 335 cggcgccgccggcgaccggtgccccatg 362
           |||||||||||| |||||| ||||||||
Sbjct: 489 cggcgccgccggggaccggggccccatg 462
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 328    gcttcttcggcgccgccggcgacc 351
              ||||||||| ||||||||||||||
Sbjct: 523964 gcttcttcgccgccgccggcgacc 523987
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 338      cgccgccggcgaccggtgcc 357
                ||||||||||||||||||||
Sbjct: 25410494 cgccgccggcgaccggtgcc 25410475



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 338      cgccgccggcgaccggtgcc 357
                ||||||||||||||||||||
Sbjct: 25368698 cgccgccggcgaccggtgcc 25368679
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>gb|AC154128.3| Tribolium castaneum  BAC T.cast_C36A24 (Clemson University Genomics
             Institute Tribolium castaneum BAC Library (Red Flour
             Beetle)) complete sequence
          Length = 154107

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 50    ttattcatgaactagctaaacaat 73
             |||||||| |||||||||||||||
Sbjct: 90027 ttattcataaactagctaaacaat 90050


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,454,035
Number of Sequences: 3902068
Number of extensions: 3454035
Number of successful extensions: 67123
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66408
Number of HSP's gapped (non-prelim): 714
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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