ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLGB_PHOPR (Q6LHN1) 1,4-alpha-glucan branching enzyme (EC 2.4.1.... 30 2.7
2ATX1_PLAFA (Q04956) Probable cation-transporting ATPase 1 (EC 3.... 28 7.7
3SUHW2_HUMAN (Q86YH2) Suppressor of hairy wing homolog 2 (5'OY11.... 28 7.7

>GLGB_PHOPR (Q6LHN1) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 716

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +1

Query: 127 AYLHDL*NENVAKLLISSATFLAHLYNIQGLKLNPV 234
           +Y++D   ++V + LIS+A F    Y+I GL+++ V
Sbjct: 361 SYIYDYGRDHVRRFLISNALFWLEHYHIDGLRVDAV 396



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>ATX1_PLAFA (Q04956) Probable cation-transporting ATPase 1 (EC 3.6.3.-)|
          Length = 1956

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 73  IFLCLYKRSTCRSRTSLPAYLHDL*NENVAKLLISSATFLAHLYNIQGLKLN 228
           I+ CL K+    S+ +   Y     NE++ K ++   T++  LYNI  +K N
Sbjct: 319 IYDCLLKKVEAISQKNKIIYS----NEDINKYMLYGGTYVLSLYNINKIKYN 366



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>SUHW2_HUMAN (Q86YH2) Suppressor of hairy wing homolog 2 (5'OY11.1) (Zinc finger|
           protein 632)
          Length = 543

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 151 HFTDHAGRQAGWFCFCRCFFCTDKEK*EQDEICYSIF 41
           H+  H G+ A     CR  F T KEK E    C+ +F
Sbjct: 450 HYRGHWGKSAHQCSKCRLQFLTFKEKMEHKTQCHQMF 486


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,925,423
Number of Sequences: 219361
Number of extensions: 960236
Number of successful extensions: 1802
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1802
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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