ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AROB_CLOTE (Q894C9) 3-dehydroquinate synthase (EC 4.2.3.4) 29 2.7
2MCE1_YEAST (Q01159) mRNA capping enzyme alpha subunit (mRNA guan... 29 3.5
3EF2_METVA (P09604) Elongation factor 2 (EF-2) 28 5.9
4EF2_METMP (Q6LXI2) Elongation factor 2 (EF-2) 28 5.9
5WRK19_ARATH (Q9SZ67) Probable WRKY transcription factor 19 (WRKY... 28 5.9

>AROB_CLOTE (Q894C9) 3-dehydroquinate synthase (EC 4.2.3.4)|
          Length = 373

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 18/101 (17%)
 Frame = +3

Query: 36  TLGVSVRQTCRQDITHNYFIEKGSVNVLKMSNH----------------KQFALPT--NE 161
           T+G ++  T +  ITH   +  G +  LK+S H                K+  LPT    
Sbjct: 263 TIGHAIEMTSKNKITHGEAVALGMLVSLKLSEHIYGLDKNLYYRMEKLYKKLGLPTKYKV 322

Query: 162 *HARLSSYNIGTERINLKSILFVSTTDFFLEHIKLSPDEVE 284
            +  L  Y I  ++ N  +I FV   D     +K+  ++ E
Sbjct: 323 DNYNLFMYAINHDKKNKDNIRFVLLKDVEKPEVKIEVNKEE 363



to top

>MCE1_YEAST (Q01159) mRNA capping enzyme alpha subunit (mRNA|
           guanylyltransferase) (EC 2.7.7.50) (GTP--RNA
           guanylyltransferase) (GTase)
          Length = 459

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 286 PSTSSG-DSLMCSKKKSVVETNKIDFKLIRSVPMLYEESL 170
           P T+ G DSL+   K    + N +DFKLI  +PM+ + SL
Sbjct: 235 PYTAGGKDSLLLKWKPE--QENTVDFKLILDIPMVEDPSL 272



to top

>EF2_METVA (P09604) Elongation factor 2 (EF-2)|
          Length = 727

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +3

Query: 210 LKSILFVSTTDFFLEHIKLSPDEVEG 287
           +K +LF++  D  +  +KL+P+E++G
Sbjct: 141 VKPVLFINKVDRLINELKLTPEELQG 166



to top

>EF2_METMP (Q6LXI2) Elongation factor 2 (EF-2)|
          Length = 727

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +3

Query: 210 LKSILFVSTTDFFLEHIKLSPDEVEG 287
           +K +LF++  D  +  +KL+P+E++G
Sbjct: 141 VKPVLFINKVDRLINELKLTPEELQG 166



to top

>WRK19_ARATH (Q9SZ67) Probable WRKY transcription factor 19 (WRKY DNA-binding|
            protein 19)
          Length = 1895

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 147  LPTNE*HARLSSYNIGTERI-NLKSILFVSTTDFFLEHIKLSPDE 278
            +P ++     + YNIGT ++  +  IL +   DF L  +K++P+E
Sbjct: 1820 IPYSDLEIGTALYNIGTGKLPKIPDILSLDARDFILTCLKVNPEE 1864


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,631,132
Number of Sequences: 219361
Number of extensions: 687790
Number of successful extensions: 1359
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top