>gb|AC158611.7| Mus musculus 10 BAC RP23-29D19 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 214923

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 70    aggatattacacataattatttt 92
             |||||||||||||||||||||||
Sbjct: 48033 aggatattacacataattatttt 48011

>gb|AC164630.6| Mus musculus 10 BAC RP23-153M4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187031

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 70    aggatattacacataattatttt 92
             |||||||||||||||||||||||
Sbjct: 40493 aggatattacacataattatttt 40515

>ref|XM_466273.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2782

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 171  aggctctcctcatataacataggaac 196
            |||||||||||||| |||||||||||
Sbjct: 2629 aggctctcctcatacaacataggaac 2604

>ref|XM_506830.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1712_E04.16 mRNA
          Length = 3376

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 171  aggctctcctcatataacataggaac 196
            |||||||||||||| |||||||||||
Sbjct: 3166 aggctctcctcatacaacataggaac 3141

>emb|BX005060.12| Zebrafish DNA sequence from clone CH211-265G22 in linkage group 2,
             complete sequence
          Length = 98512

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 110   aaatgtcttgaaaatgtctaat 131
             ||||||||||||||||||||||
Sbjct: 87726 aaatgtcttgaaaatgtctaat 87747

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 171      aggctctcctcatataacataggaac 196
                |||||||||||||| |||||||||||
Sbjct: 21415958 aggctctcctcatacaacataggaac 21415983

>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0020C11
          Length = 163328

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 171   aggctctcctcatataacataggaac 196
             |||||||||||||| |||||||||||
Sbjct: 10885 aggctctcctcatacaacataggaac 10910

>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1712_E04
          Length = 110098

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 171   aggctctcctcatataacataggaac 196
             |||||||||||||| |||||||||||
Sbjct: 75911 aggctctcctcatacaacataggaac 75936

>dbj|AK121794.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095G22, full
            insert sequence
          Length = 3376

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 171  aggctctcctcatataacataggaac 196
            |||||||||||||| |||||||||||
Sbjct: 3166 aggctctcctcatacaacataggaac 3141

>dbj|AK067547.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108A18, full
            insert sequence
          Length = 2782

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 171  aggctctcctcatataacataggaac 196
            |||||||||||||| |||||||||||
Sbjct: 2629 aggctctcctcatacaacataggaac 2604

>emb|CR450775.6| Zebrafish DNA sequence from clone DKEY-121H11 in linkage group 10,
             complete sequence
          Length = 132227

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 202   gaatcaatttaaagtctatttt 223
             ||||||||||||||||||||||
Sbjct: 62668 gaatcaatttaaagtctatttt 62647

>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 69     caggatattacacataattat 89
              |||||||||||||||||||||
Sbjct: 341317 caggatattacacataattat 341297

>gb|AC137612.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0022B03,
              complete sequence
          Length = 151814

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 78     acacataattattttatagaaaaag 102
              ||||||||||||||| |||||||||
Sbjct: 131786 acacataattattttttagaaaaag 131762

>gb|AC137615.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0053F13, from chromosome 5, complete sequence
          Length = 149538

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 78    acacataattattttatagaaaaag 102
             ||||||||||||||| |||||||||
Sbjct: 46364 acacataattattttttagaaaaag 46340

>emb|AL356834.1|NCB11B22 Neurospora crassa DNA linkage group II BAC clone B11B22
          Length = 73803

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 20    tattttacattatcaaacctt 40
             |||||||||||||||||||||
Sbjct: 59698 tattttacattatcaaacctt 59718

>emb|BX855592.19| Zebrafish DNA sequence from clone CH211-232K3, complete sequence
          Length = 159646

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 110   aaatgtcttgaaaatgtctaatcat 134
             ||||||||||||||| |||||||||
Sbjct: 41753 aaatgtcttgaaaatatctaatcat 41777

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 78       acacataattattttatagaaaaag 102
                ||||||||||||||| |||||||||
Sbjct: 10146270 acacataattattttttagaaaaag 10146246

>gb|AC002449.1|AC002449 Human PAC clone RP3-404K21 from Xq23, complete sequence
          Length = 173767

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 203    aatcaatttaaagtctatttt 223
              |||||||||||||||||||||
Sbjct: 136906 aatcaatttaaagtctatttt 136926

>emb|AL627235.12| Mouse DNA sequence from clone RP23-324C12 on chromosome 11, complete
             sequence
          Length = 118185

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 81    cataattattttatagaaaaa 101
             |||||||||||||||||||||
Sbjct: 30239 cataattattttatagaaaaa 30259

>gb|AC161442.5| Mus musculus chromosome 5, clone RP23-384P12, complete sequence
          Length = 174557

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 74    tattacacataattattttatagaaaaa 101
             ||||||||||||||| ||||||||||||
Sbjct: 27337 tattacacataatta-tttatagaaaaa 27311

>emb|AL163283.2|HS21C083 Homo sapiens chromosome 21 segment HS21C083
          Length = 340000

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 79     cacataattattttatagaaaaag 102
              ||||||||||||||||| ||||||
Sbjct: 305124 cacataattattttatataaaaag 305147

>gb|AC121350.2| Rattus norvegicus chromosome 1 clone RP32-101I22 map q31-q35, complete
              sequence
          Length = 115948

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     acataattattttatagaaa 99
              ||||||||||||||||||||
Sbjct: 115325 acataattattttatagaaa 115306

>emb|BX927104.11| Zebrafish DNA sequence from clone CH211-210P22 in linkage group 17,
              complete sequence
          Length = 146265

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    taaatgtcttgaaaatgtct 128
              ||||||||||||||||||||
Sbjct: 142532 taaatgtcttgaaaatgtct 142513

>emb|AL954236.1| Pan troglodytes chromosome 22 clone RP43-054L10 map 22q22.2-q22.3,
              complete sequence
          Length = 195913

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 79     cacataattattttatagaaaaag 102
              ||||||||||||||||| ||||||
Sbjct: 110528 cacataattattttatataaaaag 110551

>gb|AC117834.6| Homo sapiens chromosome 8, clone CTD-3239E11, complete sequence
          Length = 189536

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 207    aatttaaagtctattttatt 226
              ||||||||||||||||||||
Sbjct: 181545 aatttaaagtctattttatt 181526

>gb|AC105924.4| Homo sapiens BAC clone RP11-706F1 from 4, complete sequence
          Length = 160050

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 69    caggatattacacataattatttt 92
             |||||| |||||||||||||||||
Sbjct: 59518 caggatcttacacataattatttt 59541

>emb|BX663518.10| Zebrafish DNA sequence from clone CH211-214O7 in linkage group 7,
              complete sequence
          Length = 200579

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 108    gtaaatgtcttgaaaatgtctaat 131
              ||||||||||||||||||| ||||
Sbjct: 198983 gtaaatgtcttgaaaatgtataat 199006

>gb|AF064866.2|AF064866 Homo sapiens chromosome 21 clone PAC 198E8, map 21q22.3, complete
              sequence
          Length = 119847

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 79     cacataattattttatagaaaaag 102
              ||||||||||||||||| ||||||
Sbjct: 118434 cacataattattttatataaaaag 118457

>gb|AF043945.2|AF043945 Homo sapiens chromosome 21 clone PAC 39C17 map 21q22.3, complete
             sequence
          Length = 109865

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 79    cacataattattttatagaaaaag 102
             ||||||||||||||||| ||||||
Sbjct: 27454 cacataattattttatataaaaag 27477

>gb|AC024937.21| Homo sapiens 3 BAC RP11-480A16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157198

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 203   aatcaatttaaagtctattttatt 226
             ||||| ||||||||||||||||||
Sbjct: 94268 aatcattttaaagtctattttatt 94291

>gb|AC151831.3| Mus musculus BAC clone RP24-81D24 from chromosome 14, complete sequence
          Length = 212749

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    aatttaaagtctattttatt 226
              ||||||||||||||||||||
Sbjct: 106416 aatttaaagtctattttatt 106435

>gb|AC027242.16| Homo sapiens chromosome 8, clone RP11-678P19, complete sequence
          Length = 101400

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 207  aatttaaagtctattttatt 226
            ||||||||||||||||||||
Sbjct: 2499 aatttaaagtctattttatt 2480

>emb|BX072531.6| Zebrafish DNA sequence from clone CH211-188A22, complete sequence
          Length = 156372

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    attttacattatcaaacctt 40
             ||||||||||||||||||||
Sbjct: 89650 attttacattatcaaacctt 89669

>gb|AC102466.11| Mus musculus chromosome 3, clone RP24-337A2, complete sequence
          Length = 164455

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   aaatgtcttgaaaatgtcta 129
             ||||||||||||||||||||
Sbjct: 15546 aaatgtcttgaaaatgtcta 15527


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,338,963
Number of Sequences: 3902068
Number of extensions: 3338963
Number of successful extensions: 75016
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 74898
Number of HSP's gapped (non-prelim): 119
length of query: 296
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 274
effective length of database: 17,147,199,772
effective search space: 4698332737528
effective search space used: 4698332737528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)