ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl20a07 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 32.7 bits (73), Expect = 0.45 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = -2 Query: 457 EGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 317 EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 858 EGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 32.7 bits (73), Expect = 0.45 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = -2 Query: 457 EGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 317 EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 858 EGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 32.7 bits (73), Expect = 0.45 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = -2 Query: 457 EGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 317 EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 858 EGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 32.7 bits (73), Expect = 0.45 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = -2 Query: 457 EGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 317 EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 857 EGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 900
>NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO 2) (Quinolinate| synthetase B 2) Length = 536 Score = 30.4 bits (67), Expect = 2.3 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = +1 Query: 256 CLLSSTDAAGVSSRLELALPRRIQ 327 C S TD AG +SRL L LP RI+ Sbjct: 396 CAQSVTDTAGSASRLRLTLPERIE 419
>URED_SYNY3 (P73047) Urease accessory protein ureD| Length = 270 Score = 29.6 bits (65), Expect = 3.8 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -1 Query: 281 AASVDERRQWHAQSWFRYESFGHRAKLSRELI*KLSKKERLY 156 A++V+ W A W RY+ GHR ++ L+ K +R + Sbjct: 4 ASTVNPSAPWQANLWLRYDRPGHRTRMVECLVQAPLKVQRSF 45
>CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)| (Centromere/microtubule-binding protein CBF5) (Centromere-binding factor 5) (Small nucleolar RNP protein CBF5) (H/ACA snoRNP protein CBF5) (p64') Length = 483 Score = 28.9 bits (63), Expect = 6.6 Identities = 14/42 (33%), Positives = 26/42 (61%) Frame = -2 Query: 448 ARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVE 323 ++ E+ ++ D KE+K E ++ ++K KKE+ R + GD E Sbjct: 433 SKKEKKEKKDKKEKKEKKEKKDKKEKKEKKEKKRKSEDGDSE 474
>DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1018 Score = 28.9 bits (63), Expect = 6.6 Identities = 12/44 (27%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Frame = -2 Query: 445 RLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 317 R ER ++W ++RKTA+EN+ + +++ ++ ++ + W D + + Sbjct: 131 RKERVEKWREEQRKTAMENIGEIKKELEEMKQGKKWSLEDDDEE 174
>MTA70_DROME (Q9VCE6) Probable N6-adenosine-methyltransferase MT-A70-like| protein (EC 2.1.1.62) Length = 608 Score = 28.9 bits (63), Expect = 6.6 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -2 Query: 424 WDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 317 WD K KT L + EK KKER+ + D++ D Sbjct: 5 WDIKSLKTKRNTLREKLEKRKKERIEI--LSDIQED 38
>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)| Length = 851 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -3 Query: 348 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 256 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)| Length = 867 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -3 Query: 348 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 256 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)| Length = 864 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -3 Query: 348 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 256 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>SYK2_MYCTU (P94974) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)| (Lysine--tRNA ligase 2) (LysRS 2) Length = 1172 Score = 28.5 bits (62), Expect = 8.6 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = +3 Query: 54 VLPLQRRNAVHKGHRP 101 VLP RRN VH GH P Sbjct: 628 VLPFSRRNRVHTGHHP 643
>SYK2_MYCBO (Q7VEV7) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)| (Lysine--tRNA ligase 2) (LysRS 2) Length = 1172 Score = 28.5 bits (62), Expect = 8.6 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = +3 Query: 54 VLPLQRRNAVHKGHRP 101 VLP RRN VH GH P Sbjct: 628 VLPFSRRNRVHTGHHP 643 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,764,948 Number of Sequences: 219361 Number of extensions: 1004829 Number of successful extensions: 3160 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3066 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3158 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
