ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 52 0.001
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
3dbj|AK104920.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
4dbj|AK100167.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
5dbj|AK071455.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
6dbj|AK067150.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
7emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 52 0.001
8gb|AC146508.3| Pan troglodytes BAC clone RP43-172A15 from 7, com... 42 1.3
9gb|AC004833.1| Homo sapiens PAC clone RP4-547C10 from 7, complet... 42 1.3
10gb|AC060761.10| Mus musculus chromosome 17, clone RP23-218D19, c... 42 1.3
11gb|AC005390.1|AC005390 Homo sapiens chromosome 19, cosmid R31180... 42 1.3
12emb|AL592112.7| Mouse DNA sequence from clone RP23-87H12 on chro... 42 1.3
13gb|AC096542.2| Homo sapiens chromosome 1 clone RP11-332L18, comp... 40 5.0
14emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.0 
>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17,
             complete sequence
          Length = 159894

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Plus

                                                                         
Query: 126   cgaggtacaaaccatccaggataaaagttacaccgatacagattcccgagaggaacctac 185
             |||| |||||| |||| ||||||| ||||| |||||||| ||||||  || |||||||||
Sbjct: 36907 cgagttacaaatcatctaggataagagttaaaccgatactgattcctaagtggaacctac 36966

                                                  
Query: 186   agaaatatcag--ttcatggcgtcggtggcctgcacc 220
             | |||||||||  ||| |||   ||||||||||||||
Sbjct: 36967 a-aaatatcaggtttcgtggttccggtggcctgcacc 37002
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Plus

                                                                            
Query: 126      cgaggtacaaaccatccaggataaaagttacaccgatacagattcccgagaggaacctac 185
                |||| |||||| |||| ||||||| ||||| |||||||| ||||||  || |||||||||
Sbjct: 34312504 cgagttacaaatcatctaggataagagttaaaccgatactgattcctaagtggaacctac 34312563

                                                     
Query: 186      agaaatatcag--ttcatggcgtcggtggcctgcacc 220
                | |||||||||  ||| |||   ||||||||||||||
Sbjct: 34312564 a-aaatatcaggtttcgtggttccggtggcctgcacc 34312599
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>dbj|AK104920.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G04, full
            insert sequence
          Length = 1542

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Minus

                                                                        
Query: 126  cgaggtacaaaccatccaggataaaagttacaccgatacagattcccgagaggaacctac 185
            |||| |||||| |||| ||||||| ||||| |||||||| ||||||  || |||||||||
Sbjct: 1393 cgagttacaaatcatctaggataagagttaaaccgatactgattcctaagtggaacctac 1334

                                                 
Query: 186  agaaatatcag--ttcatggcgtcggtggcctgcacc 220
            | |||||||||  ||| |||   ||||||||||||||
Sbjct: 1333 a-aaatatcaggtttcgtggttccggtggcctgcacc 1298
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>dbj|AK100167.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022F20, full
            insert sequence
          Length = 2445

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Minus

                                                                        
Query: 126  cgaggtacaaaccatccaggataaaagttacaccgatacagattcccgagaggaacctac 185
            |||| |||||| |||| ||||||| ||||| |||||||| ||||||  || |||||||||
Sbjct: 2158 cgagttacaaatcatctaggataagagttaaaccgatactgattcctaagtggaacctac 2099

                                                 
Query: 186  agaaatatcag--ttcatggcgtcggtggcctgcacc 220
            | |||||||||  ||| |||   ||||||||||||||
Sbjct: 2098 a-aaatatcaggtttcgtggttccggtggcctgcacc 2063
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>dbj|AK071455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093B04, full
            insert sequence
          Length = 3262

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Minus

                                                                        
Query: 126  cgaggtacaaaccatccaggataaaagttacaccgatacagattcccgagaggaacctac 185
            |||| |||||| |||| ||||||| ||||| |||||||| ||||||  || |||||||||
Sbjct: 3041 cgagttacaaatcatctaggataagagttaaaccgatactgattcctaagtggaacctac 2982

                                                 
Query: 186  agaaatatcag--ttcatggcgtcggtggcctgcacc 220
            | |||||||||  ||| |||   ||||||||||||||
Sbjct: 2981 a-aaatatcaggtttcgtggttccggtggcctgcacc 2946
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>dbj|AK067150.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096O18, full
            insert sequence
          Length = 1810

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Minus

                                                                        
Query: 126  cgaggtacaaaccatccaggataaaagttacaccgatacagattcccgagaggaacctac 185
            |||| |||||| |||| ||||||| ||||| |||||||| ||||||  || |||||||||
Sbjct: 1675 cgagttacaaatcatctaggataagagttaaaccgatactgattcctaagtggaacctac 1616

                                                 
Query: 186  agaaatatcag--ttcatggcgtcggtggcctgcacc 220
            | |||||||||  ||| |||   ||||||||||||||
Sbjct: 1615 a-aaatatcaggtttcgtggttccggtggcctgcacc 1580
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>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete
             sequence
          Length = 95419

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Plus

                                                                         
Query: 126   cgaggtacaaaccatccaggataaaagttacaccgatacagattcccgagaggaacctac 185
             |||| |||||| |||| ||||||| ||||| |||||||| ||||||  || |||||||||
Sbjct: 84801 cgagttacaaatcatctaggataagagttaaaccgatactgattcctaagtggaacctac 84860

                                                  
Query: 186   agaaatatcag--ttcatggcgtcggtggcctgcacc 220
             | |||||||||  ||| |||   ||||||||||||||
Sbjct: 84861 a-aaatatcaggtttcgtggttccggtggcctgcacc 84896
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>gb|AC146508.3| Pan troglodytes BAC clone RP43-172A15 from 7, complete sequence
          Length = 208067

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 71    caagagtcttggaagaattga 91
             |||||||||||||||||||||
Sbjct: 36323 caagagtcttggaagaattga 36343
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>gb|AC004833.1| Homo sapiens PAC clone RP4-547C10 from 7, complete sequence
          Length = 68890

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 71   caagagtcttggaagaattga 91
            |||||||||||||||||||||
Sbjct: 8882 caagagtcttggaagaattga 8902
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>gb|AC060761.10| Mus musculus chromosome 17, clone RP23-218D19, complete sequence
          Length = 228922

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 128    aggtacaaaccatccaggata 148
              |||||||||||||||||||||
Sbjct: 227275 aggtacaaaccatccaggata 227255
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>gb|AC005390.1|AC005390 Homo sapiens chromosome 19, cosmid R31180, complete sequence
          Length = 39470

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 318   gttgtgccgccgtgagcaagggtgc 342
             |||||||||||||||||| ||||||
Sbjct: 32808 gttgtgccgccgtgagcacgggtgc 32784
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>emb|AL592112.7| Mouse DNA sequence from clone RP23-87H12 on chromosome 17, complete
             sequence
          Length = 158307

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 128   aggtacaaaccatccaggata 148
             |||||||||||||||||||||
Sbjct: 97730 aggtacaaaccatccaggata 97710
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>gb|AC096542.2| Homo sapiens chromosome 1 clone RP11-332L18, complete sequence
          Length = 189411

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     aggaaagcgtacgtgcctgg 22
             ||||||||||||||||||||
Sbjct: 97598 aggaaagcgtacgtgcctgg 97579
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 199     catggcgtcggtggcctgcaccag 222
               |||||||| |||||||||||||||
Sbjct: 3874432 catggcgttggtggcctgcaccag 3874455


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,856,732
Number of Sequences: 3902068
Number of extensions: 1856732
Number of successful extensions: 31562
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 31532
Number of HSP's gapped (non-prelim): 41
length of query: 376
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 354
effective length of database: 17,147,199,772
effective search space: 6070108719288
effective search space used: 6070108719288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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