Clone Name | rbastl19h09 |
---|---|
Clone Library Name | barley_pub |
>gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1118_F06, complete sequence Length = 136143 Score = 186 bits (94), Expect = 4e-44 Identities = 139/154 (90%) Strand = Plus / Minus Query: 257 cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacagacg 316 |||||| ||||||||| || |||||||| |||||||||||||||||||| |||||||| | Sbjct: 48394 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttcagaggaacagagg 48335 Query: 317 gcatcttgtggcggaaccttgggtgcctcagggtgtacaggcctgcaaggaaaaccacaa 376 ||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| Sbjct: 48334 gcatcttgtggcggaaccttgggtgtctcaaggtgtacaggcctgcaaggaagaccacaa 48275 Query: 377 cacggaacggtgtgacgtacaggacgatcgcagc 410 ||||||| || || ||||| ||||| || ||||| Sbjct: 48274 cacggaatggagtcacgtagaggacaatggcagc 48241
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 186 bits (94), Expect = 4e-44 Identities = 139/154 (90%) Strand = Plus / Minus Query: 257 cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacagacg 316 |||||| ||||||||| || |||||||| |||||||||||||||||||| |||||||| | Sbjct: 17671636 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttcagaggaacagagg 17671577 Query: 317 gcatcttgtggcggaaccttgggtgcctcagggtgtacaggcctgcaaggaaaaccacaa 376 ||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| Sbjct: 17671576 gcatcttgtggcggaaccttgggtgtctcaaggtgtacaggcctgcaaggaagaccacaa 17671517 Query: 377 cacggaacggtgtgacgtacaggacgatcgcagc 410 ||||||| || || ||||| ||||| || ||||| Sbjct: 17671516 cacggaatggagtcacgtagaggacaatggcagc 17671483
>dbj|AK102476.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094I04, full insert sequence Length = 3254 Score = 186 bits (94), Expect = 4e-44 Identities = 139/154 (90%) Strand = Plus / Minus Query: 257 cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacagacg 316 |||||| ||||||||| || |||||||| |||||||||||||||||||| |||||||| | Sbjct: 2751 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttcagaggaacagagg 2692 Query: 317 gcatcttgtggcggaaccttgggtgcctcagggtgtacaggcctgcaaggaaaaccacaa 376 ||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| Sbjct: 2691 gcatcttgtggcggaaccttgggtgtctcaaggtgtacaggcctgcaaggaagaccacaa 2632 Query: 377 cacggaacggtgtgacgtacaggacgatcgcagc 410 ||||||| || || ||||| ||||| || ||||| Sbjct: 2631 cacggaatggagtcacgtagaggacaatggcagc 2598
>dbj|AK058522.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-H09, full insert sequence Length = 1888 Score = 186 bits (94), Expect = 4e-44 Identities = 139/154 (90%) Strand = Plus / Minus Query: 257 cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacagacg 316 |||||| ||||||||| || |||||||| |||||||||||||||||||| |||||||| | Sbjct: 1480 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttcagaggaacagagg 1421 Query: 317 gcatcttgtggcggaaccttgggtgcctcagggtgtacaggcctgcaaggaaaaccacaa 376 ||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| Sbjct: 1420 gcatcttgtggcggaaccttgggtgtctcaaggtgtacaggcctgcaaggaagaccacaa 1361 Query: 377 cacggaacggtgtgacgtacaggacgatcgcagc 410 ||||||| || || ||||| ||||| || ||||| Sbjct: 1360 cacggaatggagtcacgtagaggacaatggcagc 1327
>gb|AY111562.1| Zea mays CL51463_1 mRNA sequence Length = 612 Score = 159 bits (80), Expect = 9e-36 Identities = 143/164 (87%) Strand = Plus / Plus Query: 259 tacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacagacggc 318 ||||||||||| || ||||| || ||||| | |||||||||||| ||||| || |||||| Sbjct: 352 tacagcatgctgtcagtcctcgccggcagacgcctgaagaagttgagcgggacggacggc 411 Query: 319 atcttgtggcggaaccttgggtgcctcagggtgtacaggcctgcaaggaaaaccacaaca 378 ||||||||||||||||| ||||||||||| |||||||||| || ||||| ||||| || Sbjct: 412 atcttgtggcggaacctggggtgcctcagcatgtacaggcccgcgaggaagaccacgacc 471 Query: 379 cggaacggtgtgacgtacaggacgatcgcagcgatgaagcagaa 422 |||||||||||||||||||| ||||| || |||| ||||||||| Sbjct: 472 cggaacggtgtgacgtacagcacgatggcggcgacgaagcagaa 515
>gb|AY104073.1| Zea mays PCO099302 mRNA sequence Length = 1254 Score = 159 bits (80), Expect = 9e-36 Identities = 143/164 (87%) Strand = Plus / Minus Query: 259 tacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacagacggc 318 ||||||||||| |||||||| || ||||| | |||||||||||| ||||| ||||| ||| Sbjct: 990 tacagcatgctgtcggtcctcgccggcagacgcctgaagaagttgagcgggacagatggc 931 Query: 319 atcttgtggcggaaccttgggtgcctcagggtgtacaggcctgcaaggaaaaccacaaca 378 ||||||||||||||||| ||||||||||| |||||||||||| ||||| ||||| || Sbjct: 930 atcttgtggcggaacctggggtgcctcagcacgtacaggcctgcgaggaagaccacgacg 871 Query: 379 cggaacggtgtgacgtacaggacgatcgcagcgatgaagcagaa 422 |||||||| ||||| ||||||||||| || |||| ||||||||| Sbjct: 870 cggaacggagtgacatacaggacgatggcggcgacgaagcagaa 827
>gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1i2, complete sequence Length = 154095 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 262 agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacagacggcatc 321 ||||||| ||| || |||||||||| |||||||||||| || ||||| ||||| || | | Sbjct: 91505 agcatgcaatcagttcttgcaggcaacctcctgaagaaattgagcggcacagaaggaagc 91446 Query: 322 ttgtggcggaaccttgg 338 ||||| || |||||||| Sbjct: 91445 ttgtgacgaaaccttgg 91429
>ref|NM_121300.2| Arabidopsis thaliana unknown protein AT5G12970 mRNA, complete cds Length = 2557 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 277 cttgcaggcagcctcctgaagaagttcagcggaacagacggcatcttgtggcggaacctt 336 |||||||| ||||||||||||| || ||||| ||||| || | |||||| | ||||||| Sbjct: 2512 cttgcaggtagcctcctgaagagattgagcggcacagagggtagcttgtgcctgaacctt 2453 Query: 337 gggtgcctcag 347 || |||||||| Sbjct: 2452 ggatgcctcag 2442
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project) Length = 90020 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 277 cttgcaggcagcctcctgaagaagttcagcggaacagacggcatcttgtggcggaacctt 336 |||||||| ||||||||||||| || ||||| ||||| || | |||||| | ||||||| Sbjct: 57099 cttgcaggtagcctcctgaagagattgagcggcacagagggtagcttgtgcctgaacctt 57040 Query: 337 gggtgcctcag 347 || |||||||| Sbjct: 57039 ggatgcctcag 57029
>ref|XM_506339.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_F08.109 mRNA Length = 3486 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Minus Query: 278 ttgcaggcagcctcctgaagaagttca 304 ||||||| ||||||||||||||||||| Sbjct: 3326 ttgcaggtagcctcctgaagaagttca 3300
>ref|XM_478107.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3402 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Minus Query: 278 ttgcaggcagcctcctgaagaagttca 304 ||||||| ||||||||||||||||||| Sbjct: 3207 ttgcaggtagcctcctgaagaagttca 3181
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Plus Query: 278 ttgcaggcagcctcctgaagaagttca 304 ||||||| ||||||||||||||||||| Sbjct: 17633773 ttgcaggtagcctcctgaagaagttca 17633799
>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_F08 Length = 134988 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Plus Query: 278 ttgcaggcagcctcctgaagaagttca 304 ||||||| ||||||||||||||||||| Sbjct: 37806 ttgcaggtagcctcctgaagaagttca 37832
>dbj|AP005479.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0045A07 Length = 174165 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Plus Query: 278 ttgcaggcagcctcctgaagaagttca 304 ||||||| ||||||||||||||||||| Sbjct: 161722 ttgcaggtagcctcctgaagaagttca 161748
>dbj|AK122057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114M07, full insert sequence Length = 3592 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Minus Query: 278 ttgcaggcagcctcctgaagaagttca 304 ||||||| ||||||||||||||||||| Sbjct: 3391 ttgcaggtagcctcctgaagaagttca 3365
>dbj|AK067097.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095C11, full insert sequence Length = 3402 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Minus Query: 278 ttgcaggcagcctcctgaagaagttca 304 ||||||| ||||||||||||||||||| Sbjct: 3207 ttgcaggtagcctcctgaagaagttca 3181
>dbj|AK064915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M15, full insert sequence Length = 3486 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Minus Query: 278 ttgcaggcagcctcctgaagaagttca 304 ||||||| ||||||||||||||||||| Sbjct: 3326 ttgcaggtagcctcctgaagaagttca 3300
>ref|NM_104035.2| Arabidopsis thaliana unknown protein AT1G51570 mRNA, complete cds Length = 2513 Score = 44.1 bits (22), Expect = 0.36 Identities = 43/50 (86%) Strand = Plus / Minus Query: 262 agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaac 311 ||||||| ||| || ||||| || ||||||||||||||||| || ||||| Sbjct: 2327 agcatgcaatcagttcttgctggaagcctcctgaagaagttaagtggaac 2278
>ref|XM_468390.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3000 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 ggcagcctcctgaagaagttca 304 |||||||||||||||||||||| Sbjct: 2975 ggcagcctcctgaagaagttca 2954
>gb|AY054155.1| Arabidopsis thaliana At1g51570/F19C24.20 mRNA, complete cds Length = 873 Score = 44.1 bits (22), Expect = 0.36 Identities = 43/50 (86%) Strand = Plus / Minus Query: 262 agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaac 311 ||||||| ||| || ||||| || ||||||||||||||||| || ||||| Sbjct: 869 agcatgcaatcagttcttgctggaagcctcctgaagaagttaagtggaac 820
>gb|AY045695.1| Arabidopsis thaliana F19C24.20/F19C24.20 mRNA, complete cds Length = 1126 Score = 44.1 bits (22), Expect = 0.36 Identities = 43/50 (86%) Strand = Plus / Minus Query: 262 agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaac 311 ||||||| ||| || ||||| || ||||||||||||||||| || ||||| Sbjct: 934 agcatgcaatcagttcttgctggaagcctcctgaagaagttaagtggaac 885
>gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete sequence Length = 124511 Score = 44.1 bits (22), Expect = 0.36 Identities = 43/50 (86%) Strand = Plus / Minus Query: 262 agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaac 311 ||||||| ||| || ||||| || ||||||||||||||||| || ||||| Sbjct: 123365 agcatgcaatcagttcttgctggaagcctcctgaagaagttaagtggaac 123316
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 ggcagcctcctgaagaagttca 304 |||||||||||||||||||||| Sbjct: 34979788 ggcagcctcctgaagaagttca 34979767
>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete sequence Length = 92652 Score = 44.1 bits (22), Expect = 0.36 Identities = 43/50 (86%) Strand = Plus / Minus Query: 262 agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaac 311 ||||||| ||| || ||||| || ||||||||||||||||| || ||||| Sbjct: 18385 agcatgcaatcagttcttgctggaagcctcctgaagaagttaagtggaac 18336
>dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643F09 Length = 161001 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 ggcagcctcctgaagaagttca 304 |||||||||||||||||||||| Sbjct: 40129 ggcagcctcctgaagaagttca 40108
>gb|AY112391.1| Zea mays CL5467_2 mRNA sequence Length = 648 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 278 ttgcaggcagcctcctgaagaagtt 302 ||||||| ||||||||||||||||| Sbjct: 245 ttgcaggtagcctcctgaagaagtt 269
>gb|AY111168.1| Zea mays CL5467_1 mRNA sequence Length = 574 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 278 ttgcaggcagcctcctgaagaagtt 302 ||||||| ||||||||||||||||| Sbjct: 215 ttgcaggtagcctcctgaagaagtt 239
>gb|AF099917.1| Caenorhabditis elegans cosmid F54D10, complete sequence Length = 32563 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 gcaacggaaaaggctacaaa 115 |||||||||||||||||||| Sbjct: 5041 gcaacggaaaaggctacaaa 5060
>gb|AC095904.7| Rattus norvegicus 9 BAC CH230-10L20 (Children's Hospital Oakland Research Institute) complete sequence Length = 212732 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ggaccaaaaccatcctgaaa 82 |||||||||||||||||||| Sbjct: 8164 ggaccaaaaccatcctgaaa 8183
>emb|AJ299436.2|LRU299436 Lumbricus rubellus mt2C gene for metallothionein 2C, exons 1-4 Length = 9629 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 aaacacagacatacaggcaa 99 |||||||||||||||||||| Sbjct: 7720 aaacacagacatacaggcaa 7701
>gb|AC158470.1| Postia placenta clone JGIACWS-5E10, complete sequence Length = 33410 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 ggaaaaggctacaaacaacg 120 |||||||||||||||||||| Sbjct: 4549 ggaaaaggctacaaacaacg 4530 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,301,433 Number of Sequences: 3902068 Number of extensions: 3301433 Number of successful extensions: 55184 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55071 Number of HSP's gapped (non-prelim): 113 length of query: 422 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 400 effective length of database: 17,147,199,772 effective search space: 6858879908800 effective search space used: 6858879908800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)