Clone Name | rbastl19h07 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | ASPM_FELCA (P62288) Abnormal spindle-like microcephaly-associate... | 33 | 0.29 | 2 | FTR_METFE (Q49168) Formylmethanofuran--tetrahydromethanopterin f... | 29 | 5.5 | 3 | Y2150_BRAJA (Q45222) Hypothetical protein blr2150 (ORF8) | 28 | 7.2 | 4 | Y4KS_RHISN (P55537) Hypothetical 33.2 kDa protein y4kS | 28 | 7.2 |
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>ASPM_FELCA (P62288) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3461 Score = 33.1 bits (74), Expect = 0.29 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = +1 Query: 193 YNIRRQNKRW-IMNQ*RELIQLYISINNSGRLRMHTHCR*NLSTKALALFIQSQIRSTNL 369 Y + Q K+W IM + LIQ+Y GR + + L TKA + IQS RS + Sbjct: 1982 YRMHVQQKKWDIMKKAARLIQMYYRAYRIGRRQRQLY----LKTKAAIVIIQSAYRSMRV 2037 Query: 370 TTQLSE 387 ++ E Sbjct: 2038 RKKIKE 2043
>FTR_METFE (Q49168) Formylmethanofuran--tetrahydromethanopterin| formyltransferase (EC 2.3.1.101) (H4MPT formyltransferase) Length = 297 Score = 28.9 bits (63), Expect = 5.5 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +3 Query: 171 ERPQKTLIQHQASK*KMDHEPIERIDSTI 257 +RP T+I SK K+DHE +ER+ TI Sbjct: 68 QRPGFTIIICNPSKKKLDHELLERVGMTI 96
>Y2150_BRAJA (Q45222) Hypothetical protein blr2150 (ORF8)| Length = 300 Score = 28.5 bits (62), Expect = 7.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -3 Query: 223 SIFYFDA*CCISVFWGLSWVTL 158 SI Y + CC+S+ WGL TL Sbjct: 165 SIAYANVFCCLSLLWGLDMATL 186
>Y4KS_RHISN (P55537) Hypothetical 33.2 kDa protein y4kS| Length = 301 Score = 28.5 bits (62), Expect = 7.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -3 Query: 223 SIFYFDA*CCISVFWGLSWVTL 158 SI Y + CC+S+ WGL TL Sbjct: 166 SIAYANVFCCLSLLWGLDMATL 187 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,779,901 Number of Sequences: 219361 Number of extensions: 1208285 Number of successful extensions: 2428 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 2369 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2428 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)