ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X67960.1|HVGRP94HO H.vulgare mRNA for GRP94 homologue 502 e-139
2gb|BT016887.1| Zea mays clone Contig720 mRNA sequence 163 6e-37
3gb|AY103537.1| Zea mays PCO098403 mRNA sequence 163 6e-37
4gb|BT018707.1| Zea mays clone EL01N0516A06.d mRNA sequence 159 9e-36
5gb|BT018144.1| Zea mays clone EL01N0555C04.c mRNA sequence 159 9e-36
6gb|BT024056.1| Zea mays clone EL01N0440A11 mRNA sequence 155 1e-34
7gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic ... 139 8e-30
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 139 8e-30
9dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic D... 139 8e-30
10dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic D... 139 8e-30
11dbj|AK119605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 8e-30
12dbj|AK102478.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 8e-30
13dbj|AK062023.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 8e-30
14dbj|AB037681.1| Oryza sativa HSP90 mRNA for heat shock protein 9... 131 2e-27
15gb|AC165972.4| Mus musculus BAC clone RP23-87D12 from chromosome... 48 0.024
16dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 44 0.37
17gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 44 0.37
18gb|CP000087.1| Rickettsia bellii RML369-C, complete genome 42 1.5
19emb|BX842647.1| Bdellovibrio bacteriovorus complete genome, stra... 42 1.5
20gb|AC108877.2| Drosophila melanogaster 3L BAC RP98-17L24 (Roswel... 42 1.5
21gb|AC023751.3| Drosophila melanogaster 3L BAC RP98-31C17 (Roswel... 42 1.5
22ref|NM_139675.2| Drosophila melanogaster Leucyl-tRNA synthetase ... 42 1.5
23gb|AY089557.1| Drosophila melanogaster LD44376 full insert cDNA 42 1.5
24gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cance... 42 1.5
25ref|NR_002839.1| Mus musculus distal-less homeobox 6, antisense ... 42 1.5
26ref|XM_318677.2| Anopheles gambiae str. PEST ENSANGP00000004639 ... 42 1.5
27gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, comple... 42 1.5
28gb|AE003482.4| Drosophila melanogaster chromosome 3L, section 16... 42 1.5
29gb|AF022079.1|AF022079 Mus musculus antisense Dlx-6 mRNA, partia... 42 1.5
30gb|AC122240.4| Mus musculus BAC clone RP23-145L9 from 6, complet... 42 1.5
31gb|L14594.1|CTRHSP90A Catharanthus roseus heat shock protein 90 ... 42 1.5
32gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Par... 40 5.8
33gb|AC104820.4| Homo sapiens BAC clone RP11-739A13 from 2, comple... 40 5.8
34dbj|AP004735.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
35dbj|AP004734.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
36gb|AC002460.1|AC002460 Human BAC clone CTB-191D16, complete sequ... 40 5.8
37emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 i... 40 5.8
38dbj|AP000785.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.8
39gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 5.8 
>emb|X67960.1|HVGRP94HO H.vulgare mRNA for GRP94 homologue
          Length = 2682

 Score =  502 bits (253), Expect = e-139
 Identities = 256/257 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    aattccaactagctagggtatcgtcattaaacaagaaacttggtacagtagtacattaca 60
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2674 aattccaactagctagggtatcgtcattaaacaagaaactaggtacagtagtacattaca 2615

                                                                        
Query: 61   cggacaaaaccccccgtatcacgatcgatgattaatcgtcttccgcgcggtaaaaatgga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2614 cggacaaaaccccccgtatcacgatcgatgattaatcgtcttccgcgcggtaaaaatgga 2555

                                                                        
Query: 121  cgtccctcaaaaccatcacatttccagtccaacatttctttctaatgaaatgaaagctaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2554 cgtccctcaaaaccatcacatttccagtccaacatttctttctaatgaaatgaaagctaa 2495

                                                                        
Query: 181  atgggcgatatgagcaactacagctcgtccttgtcgtactgctcgtgttccggctcctcc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2494 atgggcgatatgagcaactacagctcgtccttgtcgtactgctcgtgttccggctcctcc 2435

                             
Query: 241  gcctcctgcttggccga 257
            |||||||||||||||||
Sbjct: 2434 gcctcctgcttggccga 2418



 Score =  242 bits (122), Expect = 8e-61
 Identities = 125/126 (99%)
 Strand = Plus / Minus

                                                                        
Query: 304  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2371 acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 2312

                                                                        
Query: 364  aagtccttggggtccggcaggttgaacccactctccatcagcgccgtctggtacaccagc 423
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2311 aagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 2252

                  
Query: 424  ctcgcc 429
            ||||||
Sbjct: 2251 ctcgcc 2246
to top
>gb|BT016887.1| Zea mays clone Contig720 mRNA sequence
          Length = 719

 Score =  163 bits (82), Expect = 6e-37
 Identities = 115/126 (91%)
 Strand = Plus / Plus

                                                                       
Query: 304 acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 363
           ||||| |||||||||||||||||||||||||| |||||||||  ||||||||| ||||| 
Sbjct: 339 acggccgcgtcggggctcaggtccaggctcttgtgcaccgacttgtagatgctggacgcg 398

                                                                       
Query: 364 aagtccttggggtccggcaggttgaacccactctccatcagcgccgtctggtacaccagc 423
           || ||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 399 aactccttggggtcggggaggttgaacccgctctccatcagggccgtctggtacaccagc 458

                 
Query: 424 ctcgcc 429
           ||||||
Sbjct: 459 ctcgcc 464
to top
>gb|AY103537.1| Zea mays PCO098403 mRNA sequence
          Length = 2806

 Score =  163 bits (82), Expect = 6e-37
 Identities = 115/126 (91%)
 Strand = Plus / Minus

                                                                        
Query: 304  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 363
            ||||| |||||||||||||||||||||||||| |||||||||  ||||||||| ||||| 
Sbjct: 2402 acggccgcgtcggggctcaggtccaggctcttgtgcaccgacttgtagatgctggacgcg 2343

                                                                        
Query: 364  aagtccttggggtccggcaggttgaacccactctccatcagcgccgtctggtacaccagc 423
            || ||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 2342 aactccttggggtcggggaggttgaacccgctctccatcagggccgtctggtacaccagc 2283

                  
Query: 424  ctcgcc 429
            ||||||
Sbjct: 2282 ctcgcc 2277



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 197  actacagctcgtccttgtcg 216
            ||||||||||||||||||||
Sbjct: 2503 actacagctcgtccttgtcg 2484
to top
>gb|BT018707.1| Zea mays clone EL01N0516A06.d mRNA sequence
          Length = 1546

 Score =  159 bits (80), Expect = 9e-36
 Identities = 110/120 (91%)
 Strand = Plus / Minus

                                                                        
Query: 310  gcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgcaaagtcc 369
            |||||||||||||||||||||| |||||||||||||  ||||||||| ||||| || |||
Sbjct: 1240 gcgtcggggctcaggtccaggcccttctgcaccgacttgtagatgctggacgcgaactcc 1181

                                                                        
Query: 370  ttggggtccggcaggttgaacccactctccatcagcgccgtctggtacaccagcctcgcc 429
            |||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 1180 ttggggtcggggaggttgaacccgctctccatcagggccgtctggtacaccagcctcgcc 1121
to top
>gb|BT018144.1| Zea mays clone EL01N0555C04.c mRNA sequence
          Length = 1544

 Score =  159 bits (80), Expect = 9e-36
 Identities = 110/120 (91%)
 Strand = Plus / Minus

                                                                        
Query: 310  gcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgcaaagtcc 369
            |||||||||||||||||||||| |||||||||||||  ||||||||| ||||| || |||
Sbjct: 1226 gcgtcggggctcaggtccaggcccttctgcaccgacttgtagatgctggacgcgaactcc 1167

                                                                        
Query: 370  ttggggtccggcaggttgaacccactctccatcagcgccgtctggtacaccagcctcgcc 429
            |||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 1166 ttggggtcggggaggttgaacccgctctccatcagggccgtctggtacaccagcctcgcc 1107
to top
>gb|BT024056.1| Zea mays clone EL01N0440A11 mRNA sequence
          Length = 2511

 Score =  155 bits (78), Expect = 1e-34
 Identities = 114/126 (90%)
 Strand = Plus / Minus

                                                                        
Query: 304  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 363
            ||||| |||||||||||||||||||||||||| |||||||||  ||||||||| ||||| 
Sbjct: 2172 acggccgcgtcggggctcaggtccaggctcttgtgcaccgacttgtagatgctggacgcg 2113

                                                                        
Query: 364  aagtccttggggtccggcaggttgaacccactctccatcagcgccgtctggtacaccagc 423
            || ||||||||||| || ||| ||||||| ||||||||||| ||||||||||||||||||
Sbjct: 2112 aactccttggggtcggggagggtgaacccgctctccatcagggccgtctggtacaccagc 2053

                  
Query: 424  ctcgcc 429
            ||||||
Sbjct: 2052 ctcgcc 2047
to top
>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete
            sequence
          Length = 143507

 Score =  139 bits (70), Expect = 8e-30
 Identities = 112/126 (88%)
 Strand = Plus / Plus

                                                                        
Query: 304  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 363
            ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || || 
Sbjct: 9601 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 9660

                                                                        
Query: 364  aagtccttggggtccggcaggttgaacccactctccatcagcgccgtctggtacaccagc 423
            ||||||||||| || || |||||||| || |||||||| || ||||||||||||||||||
Sbjct: 9661 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 9720

                  
Query: 424  ctcgcc 429
             |||||
Sbjct: 9721 ttcgcc 9726



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                            
Query: 112  aaaaatggacgtccctcaaaaccatcacattt 143
            ||||||||||||||||| ||||||||||||||
Sbjct: 9409 aaaaatggacgtccctcgaaaccatcacattt 9440
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  139 bits (70), Expect = 8e-30
 Identities = 112/126 (88%)
 Strand = Plus / Plus

                                                                            
Query: 304      acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 363
                ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || || 
Sbjct: 29928895 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 29928954

                                                                            
Query: 364      aagtccttggggtccggcaggttgaacccactctccatcagcgccgtctggtacaccagc 423
                ||||||||||| || || |||||||| || |||||||| || ||||||||||||||||||
Sbjct: 29928955 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 29929014

                      
Query: 424      ctcgcc 429
                 |||||
Sbjct: 29929015 ttcgcc 29929020



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                                
Query: 112      aaaaatggacgtccctcaaaaccatcacattt 143
                ||||||||||||||||| ||||||||||||||
Sbjct: 29928703 aaaaatggacgtccctcgaaaccatcacattt 29928734



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 229      tccggctcctccgcctcctgcttggccg 256
                ||||||||||||||||||| ||| ||||
Sbjct: 15914667 tccggctcctccgcctcctccttcgccg 15914694
to top
>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0541C02
          Length = 150660

 Score =  139 bits (70), Expect = 8e-30
 Identities = 112/126 (88%)
 Strand = Plus / Plus

                                                                        
Query: 304  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 363
            ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || || 
Sbjct: 5043 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 5102

                                                                        
Query: 364  aagtccttggggtccggcaggttgaacccactctccatcagcgccgtctggtacaccagc 423
            ||||||||||| || || |||||||| || |||||||| || ||||||||||||||||||
Sbjct: 5103 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 5162

                  
Query: 424  ctcgcc 429
             |||||
Sbjct: 5163 ttcgcc 5168



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                            
Query: 112  aaaaatggacgtccctcaaaaccatcacattt 143
            ||||||||||||||||| ||||||||||||||
Sbjct: 4851 aaaaatggacgtccctcgaaaccatcacattt 4882
to top
>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0481E08
          Length = 171965

 Score =  139 bits (70), Expect = 8e-30
 Identities = 112/126 (88%)
 Strand = Plus / Plus

                                                                          
Query: 304    acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 363
              ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || || 
Sbjct: 124408 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 124467

                                                                          
Query: 364    aagtccttggggtccggcaggttgaacccactctccatcagcgccgtctggtacaccagc 423
              ||||||||||| || || |||||||| || |||||||| || ||||||||||||||||||
Sbjct: 124468 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 124527

                    
Query: 424    ctcgcc 429
               |||||
Sbjct: 124528 ttcgcc 124533



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                              
Query: 112    aaaaatggacgtccctcaaaaccatcacattt 143
              ||||||||||||||||| ||||||||||||||
Sbjct: 124216 aaaaatggacgtccctcgaaaccatcacattt 124247
to top
>dbj|AK119605.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-F01, full
            insert sequence
          Length = 1944

 Score =  139 bits (70), Expect = 8e-30
 Identities = 112/126 (88%)
 Strand = Plus / Minus

                                                                        
Query: 304  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 363
            ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || || 
Sbjct: 1656 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 1597

                                                                        
Query: 364  aagtccttggggtccggcaggttgaacccactctccatcagcgccgtctggtacaccagc 423
            ||||||||||| || || |||||||| || |||||||| || ||||||||||||||||||
Sbjct: 1596 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 1537

                  
Query: 424  ctcgcc 429
             |||||
Sbjct: 1536 ttcgcc 1531



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 112  aaaaatggacgtccctcaaaaccatcacattt 143
            ||||||||||||||||| ||||||||||||||
Sbjct: 1848 aaaaatggacgtccctcgaaaccatcacattt 1817
to top
>dbj|AK102478.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094I10, full
            insert sequence
          Length = 2708

 Score =  139 bits (70), Expect = 8e-30
 Identities = 112/126 (88%)
 Strand = Plus / Minus

                                                                        
Query: 304  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 363
            ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || || 
Sbjct: 2416 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 2357

                                                                        
Query: 364  aagtccttggggtccggcaggttgaacccactctccatcagcgccgtctggtacaccagc 423
            ||||||||||| || || |||||||| || |||||||| || ||||||||||||||||||
Sbjct: 2356 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 2297

                  
Query: 424  ctcgcc 429
             |||||
Sbjct: 2296 ttcgcc 2291



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 112  aaaaatggacgtccctcaaaaccatcacattt 143
            ||||||||||||||||| ||||||||||||||
Sbjct: 2608 aaaaatggacgtccctcgaaaccatcacattt 2577
to top
>dbj|AK062023.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-G02, full
            insert sequence
          Length = 2026

 Score =  139 bits (70), Expect = 8e-30
 Identities = 112/126 (88%)
 Strand = Plus / Minus

                                                                        
Query: 304  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 363
            ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || || 
Sbjct: 1738 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 1679

                                                                        
Query: 364  aagtccttggggtccggcaggttgaacccactctccatcagcgccgtctggtacaccagc 423
            ||||||||||| || || |||||||| || |||||||| || ||||||||||||||||||
Sbjct: 1678 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 1619

                  
Query: 424  ctcgcc 429
             |||||
Sbjct: 1618 ttcgcc 1613



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 112  aaaaatggacgtccctcaaaaccatcacattt 143
            ||||||||||||||||| ||||||||||||||
Sbjct: 1930 aaaaatggacgtccctcgaaaccatcacattt 1899
to top
>dbj|AB037681.1| Oryza sativa HSP90 mRNA for heat shock protein 90, complete cds
          Length = 2731

 Score =  131 bits (66), Expect = 2e-27
 Identities = 111/126 (88%)
 Strand = Plus / Minus

                                                                        
Query: 304  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 363
            ||||| ||||||||||||||||| ||||||||||||||||||| |||||||||  | || 
Sbjct: 2410 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctgaaggcg 2351

                                                                        
Query: 364  aagtccttggggtccggcaggttgaacccactctccatcagcgccgtctggtacaccagc 423
            ||||||||||| || || |||||||| || |||||||| || ||||||||||||||||||
Sbjct: 2350 aagtccttgggatcagggaggttgaagccgctctccatgagggccgtctggtacaccagc 2291

                  
Query: 424  ctcgcc 429
             |||||
Sbjct: 2290 ttcgcc 2285



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 112  aaaaatggacgtccctcaaaaccatcacattt 143
            ||||||||||||||||| ||||||||||||||
Sbjct: 2602 aaaaatggacgtccctcgaaaccatcacattt 2571
to top
>gb|AC165972.4| Mus musculus BAC clone RP23-87D12 from chromosome 17, complete sequence
          Length = 199737

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                              
Query: 219    ctgctcgtgttccggctcctccgcctcctgct 250
              |||||| ||||||||||||||| |||||||||
Sbjct: 178788 ctgctcctgttccggctcctcctcctcctgct 178819
to top
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 154     atttctttctaatgaaatgaaa 175
               ||||||||||||||||||||||
Sbjct: 1261169 atttctttctaatgaaatgaaa 1261148
to top
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 234     ctcctccgcctcctgcttggcc 255
               ||||||||||||||||||||||
Sbjct: 2035901 ctcctccgcctcctgcttggcc 2035922
to top
>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome
          Length = 1522076

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 162     ctaatgaaatgaaagctaaat 182
               |||||||||||||||||||||
Sbjct: 1421262 ctaatgaaatgaaagctaaat 1421242
to top
>emb|BX842647.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 2/11
          Length = 346357

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 365    agtccttggggtccggcaggt 385
              |||||||||||||||||||||
Sbjct: 266763 agtccttggggtccggcaggt 266743
to top
>gb|AC108877.2| Drosophila melanogaster 3L BAC RP98-17L24 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 163709

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 379   ggcaggttgaacccactctcc 399
             |||||||||||||||||||||
Sbjct: 45669 ggcaggttgaacccactctcc 45649
to top
>gb|AC023751.3| Drosophila melanogaster 3L BAC RP98-31C17 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 187437

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 379    ggcaggttgaacccactctcc 399
              |||||||||||||||||||||
Sbjct: 129488 ggcaggttgaacccactctcc 129468
to top
>ref|NM_139675.2| Drosophila melanogaster Leucyl-tRNA synthetase CG7479-RA (Aats-leu),
            mRNA
          Length = 3016

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 379  ggcaggttgaacccactctcc 399
            |||||||||||||||||||||
Sbjct: 2839 ggcaggttgaacccactctcc 2819
to top
>gb|AY089557.1| Drosophila melanogaster LD44376 full insert cDNA
          Length = 3013

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 379  ggcaggttgaacccactctcc 399
            |||||||||||||||||||||
Sbjct: 2800 ggcaggttgaacccactctcc 2780
to top
>gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 222553

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 160    ttctaatgaaatgaaagctaa 180
              |||||||||||||||||||||
Sbjct: 112594 ttctaatgaaatgaaagctaa 112614
to top
>ref|NR_002839.1| Mus musculus distal-less homeobox 6, antisense (Dlx6as) on chromosome
            6
          Length = 1351

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 232  ggctcctccgcctcctgcttg 252
            |||||||||||||||||||||
Sbjct: 1084 ggctcctccgcctcctgcttg 1064
to top
>ref|XM_318677.2| Anopheles gambiae str. PEST ENSANGP00000004639 (ENSANGG00000003636),
            partial mRNA
          Length = 3264

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 236  cctccgcctcctgcttggccg 256
            |||||||||||||||||||||
Sbjct: 1432 cctccgcctcctgcttggccg 1412
to top
>gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, complete sequence
          Length = 183177

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 131    aaccatcacatttccagtcca 151
              |||||||||||||||||||||
Sbjct: 132650 aaccatcacatttccagtcca 132630
to top
>gb|AE003482.4| Drosophila melanogaster chromosome 3L, section 16 of 83 of the complete
              sequence
          Length = 302417

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 379    ggcaggttgaacccactctcc 399
              |||||||||||||||||||||
Sbjct: 202498 ggcaggttgaacccactctcc 202478
to top
>gb|AF022079.1|AF022079 Mus musculus antisense Dlx-6 mRNA, partial sequence
          Length = 1351

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 232  ggctcctccgcctcctgcttg 252
            |||||||||||||||||||||
Sbjct: 1084 ggctcctccgcctcctgcttg 1064
to top
>gb|AC122240.4| Mus musculus BAC clone RP23-145L9 from 6, complete sequence
          Length = 211740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 232    ggctcctccgcctcctgcttg 252
              |||||||||||||||||||||
Sbjct: 107299 ggctcctccgcctcctgcttg 107319
to top
>gb|L14594.1|CTRHSP90A Catharanthus roseus heat shock protein 90 mRNA, complete cds
          Length = 2670

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 386  tgaacccactctccatcagcgccgtctggtaca 418
            |||| |||||||||||||| || ||||||||||
Sbjct: 2268 tgaagccactctccatcagtgcggtctggtaca 2236
to top
>gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 171236

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   aatgaaatgaaagctaaatg 183
             ||||||||||||||||||||
Sbjct: 60679 aatgaaatgaaagctaaatg 60698
to top
>gb|AC104820.4| Homo sapiens BAC clone RP11-739A13 from 2, complete sequence
          Length = 161786

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 162   ctaatgaaatgaaagctaaatggg 185
             ||||||||| ||||||||||||||
Sbjct: 22238 ctaatgaaaagaaagctaaatggg 22261
to top
>dbj|AP004735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0031P18
          Length = 156535

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 229   tccggctcctccgcctcctgcttggccg 256
             ||||||||||||||||||| ||| ||||
Sbjct: 48116 tccggctcctccgcctcctccttcgccg 48143
to top
>dbj|AP004734.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0026P23
          Length = 180188

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 229    tccggctcctccgcctcctgcttggccg 256
              ||||||||||||||||||| ||| ||||
Sbjct: 127670 tccggctcctccgcctcctccttcgccg 127697
to top
>gb|AC002460.1|AC002460 Human BAC clone CTB-191D16, complete sequence
          Length = 174952

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   ctaatgaaatgaaagctaaa 181
             ||||||||||||||||||||
Sbjct: 56061 ctaatgaaatgaaagctaaa 56080
to top
>emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 in linkage group 4,
             complete sequence
          Length = 99176

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   catttccagtccaacatttc 158
             ||||||||||||||||||||
Sbjct: 21017 catttccagtccaacatttc 21036
to top
>dbj|AP000785.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-619A14, complete
             sequence
          Length = 126000

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   ggggctcaggtccaggctct 334
             ||||||||||||||||||||
Sbjct: 18841 ggggctcaggtccaggctct 18822
to top
>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 234     ctcctccgcctcctgcttgg 253
               ||||||||||||||||||||
Sbjct: 1682827 ctcctccgcctcctgcttgg 1682846


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,014,351
Number of Sequences: 3902068
Number of extensions: 3014351
Number of successful extensions: 74294
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74105
Number of HSP's gapped (non-prelim): 189
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top