ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl19h01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF479043.1| Triticum aestivum 40S ribosomal protein mRNA, partial cds Length = 342 Score = 127 bits (64), Expect = 3e-26 Identities = 81/86 (94%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 364 ctactcagcagcagcaacctcctccgcaccaggaatgacctcatctccat---caggcct 420 |||||||||||||||||||||||||||||||||||||||||| || |||| ||||||| Sbjct: 342 ctactcagcagcagcaacctcctccgcaccaggaatgacctcgtccccatcagcaggcct 283 Query: 421 gtcaagcttcacaccaacatcctcct 446 |||||||||||||||||||||||||| Sbjct: 282 gtcaagcttcacaccaacatcctcct 257
>gb|AF117889.1|AF117889 Avena fatua 40S ribosomal protein S3A mRNA, partial cds Length = 382 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 363 tctactcagcagcagcaacctcctccgcaccaggaatgacctcatctccatcag 416 ||||||| ||||||||||||||||| ||||| || ||||||||||||||||||| Sbjct: 257 tctactcggcagcagcaacctcctcagcaccggggatgacctcatctccatcag 204 Score = 56.0 bits (28), Expect = 1e-04 Identities = 35/36 (97%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 268 atcagccatcaaaactgactaca-aagttcacgaca 302 ||||||||||||||||||||||| |||||||||||| Sbjct: 365 atcagccatcaaaactgactacagaagttcacgaca 330
>gb|BT016390.1| Zea mays clone Contig223 mRNA sequence Length = 1104 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 414 caggcctgtcaagcttcacaccaacatcctc 444 ||||||| ||||||||||||||||||||||| Sbjct: 812 caggcctctcaagcttcacaccaacatcctc 782
>gb|AY109383.1| Zea mays CL7224_1 mRNA sequence Length = 1236 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 414 caggcctgtcaagcttcacaccaacatcctc 444 ||||||| ||||||||||||||||||||||| Sbjct: 383 caggcctctcaagcttcacaccaacatcctc 413
>gb|DQ159867.1| Cymbidium faberi clone CDD-470 40s ribosomal protein S3 mRNA, partial cds Length = 462 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 414 caggcctgtcaagcttcacaccaacatcctcct 446 |||||||||||||||||||||||| ||| |||| Sbjct: 169 caggcctgtcaagcttcacaccaaaatcttcct 137
>emb|Z25769.1|BRSPSG B.rapa mRNA for S phase specific gene Length = 1050 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 416 ggcctgtcaagcttcacaccaacatcctc 444 |||||||||| |||||||||||||||||| Sbjct: 848 ggcctgtcaaccttcacaccaacatcctc 820
>gb|L23553.1|BRRSPSK Brassica rapa S-phase-specific (BIS289) mRNA, complete cds Length = 1050 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 416 ggcctgtcaagcttcacaccaacatcctc 444 |||||||||| |||||||||||||||||| Sbjct: 848 ggcctgtcaaccttcacaccaacatcctc 820
>gb|BT019079.1| Zea mays clone Contig661.F mRNA sequence Length = 1229 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Plus Query: 414 caggcctgtcaagcttcacaccaacatcctc 444 ||||||| ||||||||||||||||| ||||| Sbjct: 281 caggcctctcaagcttcacaccaacgtcctc 311
>gb|AY753062.1| Penaeus monodon clone t2603 microsatellite sequence Length = 656 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 aaatttccaattttattttcat 29 |||||||||||||||||||||| Sbjct: 587 aaatttccaattttattttcat 608
>gb|AC148711.1| Macaca mulatta Major Histocompatibility Complex BAC MMU404O15, complete sequence Length = 157177 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 3 ggagtaaatttccaattttatt 24 |||||||||||||||||||||| Sbjct: 50526 ggagtaaatttccaattttatt 50505
>gb|AC120305.6| Homo sapiens 3 BAC RP11-570H17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 95234 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 16 aattttattttcataatagatt 37 |||||||||||||||||||||| Sbjct: 73847 aattttattttcataatagatt 73868
>ref|NM_119633.2| Arabidopsis thaliana structural constituent of ribosome AT4G34670 mRNA, complete cds Length = 1093 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 416 ggcctgtcaagcttcacaccaacatcctc 444 |||||||| | |||||||||||||||||| Sbjct: 818 ggcctgtctaccttcacaccaacatcctc 790
>gb|AE014834.1| Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence Length = 253001 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 atttccaattttattttcata 30 ||||||||||||||||||||| Sbjct: 764 atttccaattttattttcata 744
>gb|AC147907.2| Xenopus tropicalis clone CH216-74C22, complete sequence Length = 184109 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 tccaattttattttcataata 33 ||||||||||||||||||||| Sbjct: 93659 tccaattttattttcataata 93679
>gb|AC147837.2| Xenopus tropicalis clone CH216-28I17, complete sequence Length = 181178 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 tccaattttattttcataata 33 ||||||||||||||||||||| Sbjct: 101014 tccaattttattttcataata 100994
>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome Length = 1545895 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 tccaattttattttcataata 33 ||||||||||||||||||||| Sbjct: 131704 tccaattttattttcataata 131684
>emb|Z93378.1|CEF19H8 Caenorhabditis elegans Cosmid F19H8, complete sequence Length = 31423 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 8 aaatttccaattttattttcataat 32 |||||||||||||| |||||||||| Sbjct: 17701 aaatttccaattttcttttcataat 17725
>gb|BT022161.1| Drosophila melanogaster IP01358 full insert cDNA Length = 3118 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 371 gcagcagcaacctcctccgca 391 ||||||||||||||||||||| Sbjct: 1211 gcagcagcaacctcctccgca 1231
>emb|AL161586.2|ATCHRIV82 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 82 Length = 195165 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 416 ggcctgtcaagcttcacaccaacatcctc 444 |||||||| | |||||||||||||||||| Sbjct: 4951 ggcctgtctaccttcacaccaacatcctc 4923
>emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81 Length = 195921 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 416 ggcctgtcaagcttcacaccaacatcctc 444 |||||||| | |||||||||||||||||| Sbjct: 195872 ggcctgtctaccttcacaccaacatcctc 195844
>emb|AL023094.2|ATT4L20 Arabidopsis thaliana DNA chromosome 4, BAC clone T4L20 (ESSA project) Length = 125502 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 416 ggcctgtcaagcttcacaccaacatcctc 444 |||||||| | |||||||||||||||||| Sbjct: 86183 ggcctgtctaccttcacaccaacatcctc 86155
>ref|NM_206456.1| Drosophila melanogaster rotund CG32466-RB, transcript variant B (rn), mRNA Length = 2444 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 371 gcagcagcaacctcctccgca 391 ||||||||||||||||||||| Sbjct: 1684 gcagcagcaacctcctccgca 1704
>ref|NM_141458.2| Drosophila melanogaster rotund CG32466-RA, transcript variant A (rn), mRNA Length = 3661 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 371 gcagcagcaacctcctccgca 391 ||||||||||||||||||||| Sbjct: 2901 gcagcagcaacctcctccgca 2921
>gb|AC112910.3| Homo sapiens 3 BAC RP11-273F12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115927 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 gagtaaatttccaattttatt 24 ||||||||||||||||||||| Sbjct: 110463 gagtaaatttccaattttatt 110483
>gb|AF395905.1|AF395905 Drosophila melanogaster rotund mRNA, complete cds Length = 3658 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 371 gcagcagcaacctcctccgca 391 ||||||||||||||||||||| Sbjct: 2898 gcagcagcaacctcctccgca 2918
>gb|AF395904.1|AF395904 Drosophila melanogaster roughened eye mRNA, complete cds Length = 2444 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 371 gcagcagcaacctcctccgca 391 ||||||||||||||||||||| Sbjct: 1684 gcagcagcaacctcctccgca 1704
>gb|AY062500.1| Arabidopsis thaliana Putative S-phase-specific ribosomal protein (At4g34670; T4L20.250) mRNA, complete cds Length = 1094 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 416 ggcctgtcaagcttcacaccaacatcctc 444 |||||||| | |||||||||||||||||| Sbjct: 818 ggcctgtctaccttcacaccaacatcctc 790
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 371 gcagcagcaacctcctccgca 391 ||||||||||||||||||||| Sbjct: 867462 gcagcagcaacctcctccgca 867442
>gb|AC160763.3| Mus musculus BAC clone RP23-238A4 from chromosome 17, complete sequence Length = 215626 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 255 aagtactcaagaaatcagccatcaa 279 |||||||||||||| |||||||||| Sbjct: 3171 aagtactcaagaaaccagccatcaa 3195
>gb|AC008029.3|AC008029 Drosophila melanogaster, chromosome 3R, region 84D-84D, BAC clone BACR01C11, complete sequence Length = 176991 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 371 gcagcagcaacctcctccgca 391 ||||||||||||||||||||| Sbjct: 137461 gcagcagcaacctcctccgca 137441
>emb|BX826401.1|CNS0A38P Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB21ZE07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 836 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 416 ggcctgtcaagcttcacaccaacatcctc 444 |||||||| | |||||||||||||||||| Sbjct: 647 ggcctgtctaccttcacaccaacatcctc 619
>emb|BX828268.1|CNS0A2YE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH6ZD12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1008 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 416 ggcctgtcaagcttcacaccaacatcctc 444 |||||||| | |||||||||||||||||| Sbjct: 803 ggcctgtctaccttcacaccaacatcctc 775
>gb|AC154561.2| Mus musculus BAC clone RP23-400M17 from chromosome 17, complete sequence Length = 191047 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 255 aagtactcaagaaatcagccatcaa 279 |||||||||||||| |||||||||| Sbjct: 73532 aagtactcaagaaaccagccatcaa 73508
>gb|AC008173.2| Homo sapiens BAC clone RP11-374F15 from 2, complete sequence Length = 193893 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 aatttccaattttattttcat 29 ||||||||||||||||||||| Sbjct: 100614 aatttccaattttattttcat 100594
>emb|BX248129.5| Zebrafish DNA sequence from clone CH211-196M16 in linkage group 17, complete sequence Length = 217707 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 7 taaatttccaattttattttcataa 31 ||||||||||||||| ||||||||| Sbjct: 44653 taaatttccaatttttttttcataa 44629
>emb|AJ001342.1|ATCYC07 Arabidopsis thaliana mRNA for S-phase-specific ribosomal protein Length = 906 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 416 ggcctgtcaagcttcacaccaacatcctc 444 |||||||| | |||||||||||||||||| Sbjct: 740 ggcctgtctaccttcacaccaacatcctc 712
>ref|NM_209036.1| Eremothecium gossypii ACR281Cp (ACR281C), mRNA Length = 3780 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 371 gcagcagcaacctcctccgca 391 ||||||||||||||||||||| Sbjct: 846 gcagcagcaacctcctccgca 866
>gb|AE003672.4| Drosophila melanogaster chromosome 3R, section 12 of 118 of the complete sequence Length = 301379 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 371 gcagcagcaacctcctccgca 391 ||||||||||||||||||||| Sbjct: 188870 gcagcagcaacctcctccgca 188850
>gb|AC148997.1| Mus musculus BAC clone RP23-338B6 from chromosome 7, complete sequence Length = 232770 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ctcctccgcaccaggaatga 401 |||||||||||||||||||| Sbjct: 38479 ctcctccgcaccaggaatga 38460
>ref|XM_533355.2| PREDICTED: Canis familiaris similar to RAP1 interacting factor 1 (LOC476148), mRNA Length = 4636 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 gaggtataatgatatcaactggag 98 |||||| ||||||||||||||||| Sbjct: 3556 gaggtaaaatgatatcaactggag 3533
>gb|AC135639.4| Mus musculus BAC clone RP23-330O16 from chromosome 7, complete sequence Length = 217404 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ctcctccgcaccaggaatga 401 |||||||||||||||||||| Sbjct: 181258 ctcctccgcaccaggaatga 181239
>gb|AC004381.1|HUAC004381 Homo sapiens Chromosome 16 BAC clone CIT987SK-44M2, complete sequence Length = 213541 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aaacacatatggcaggaata 163 |||||||||||||||||||| Sbjct: 148586 aaacacatatggcaggaata 148567
>emb|AL357793.6| Human DNA sequence from clone RP11-98G13 on chromosome 1 Contains a novel gene and part of a novel gene, complete sequence Length = 145630 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 atgcaaacataaaacacata 152 |||||||||||||||||||| Sbjct: 114195 atgcaaacataaaacacata 114214
>emb|AL356389.20| Human DNA sequence from clone RP11-352P4 on chromosome 1 Contains the 3' end of the gene for maba1 (KIAA1324) and the SARS gene for seryl-tRNA synthetase, complete sequence Length = 97114 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 caggagccactacatgcaac 59 |||||||||||||||||||| Sbjct: 8548 caggagccactacatgcaac 8529
>emb|AL356127.8| Human DNA sequence from clone RP11-368P1 on chromosome 6, complete sequence Length = 139086 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 ccatcaaaactgactacaaa 292 |||||||||||||||||||| Sbjct: 50732 ccatcaaaactgactacaaa 50751
>emb|AL008712.1|HS84F12 Human DNA sequence from clone RP1-84F12 on chromosome Xq25-26.3 Contains part of the GPC3 gene for glypican 3, complete sequence Length = 78011 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 cagcagcagcaacctcctcc 388 |||||||||||||||||||| Sbjct: 24008 cagcagcagcaacctcctcc 23989
>emb|Z99121.2|BSUB0018 Bacillus subtilis complete genome (section 18 of 21): from 3414339 to 3609030 Length = 194692 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 234 gctggctaggaatgtcggcagaag 257 ||||||||||||||| |||||||| Sbjct: 177615 gctggctaggaatgttggcagaag 177592
>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49 Length = 199075 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 ataaactaaatatttagttt 180 |||||||||||||||||||| Sbjct: 64933 ataaactaaatatttagttt 64952
>emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A21 (ESSA project) Length = 94301 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 ataaactaaatatttagttt 180 |||||||||||||||||||| Sbjct: 45652 ataaactaaatatttagttt 45671
>gb|AC135960.14| Pan troglodytes clone rp43-55o12, complete sequence Length = 157430 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 cctcatctccatcaggcctg 421 |||||||||||||||||||| Sbjct: 15763 cctcatctccatcaggcctg 15782
>gb|AC135849.6| Pan troglodytes clone ptb-33n14, complete sequence Length = 72820 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 ggagtaaatttccaattttatttt 26 ||||| |||||||||||||||||| Sbjct: 13618 ggagttaatttccaattttatttt 13641
>gb|AC021120.6| Homo sapiens BAC clone RP11-347O8 from 4, complete sequence Length = 193980 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 ggagtaaatttccaattttatttt 26 ||||| |||||||||||||||||| Sbjct: 173845 ggagttaatttccaattttatttt 173868
>dbj|AK009380.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310016D03 product:unclassifiable, full insert sequence Length = 1548 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 caattttattttcataatagattt 38 ||||||||||| |||||||||||| Sbjct: 1491 caattttatttgcataatagattt 1514
>gb|AC154485.2| Mus musculus BAC clone RP24-117M9 from chromosome 12, complete sequence Length = 154864 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 caattttattttcataatagattt 38 ||||||||||| |||||||||||| Sbjct: 49268 caattttatttgcataatagattt 49245
>gb|AC000085.5| Homo sapiens Chromosome 22q11.2 BAC Clone 72f8 In DGCR Region, complete sequence Length = 100152 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 ggagtaaatttccaattttatttt 26 ||||| |||||||||||||||||| Sbjct: 80213 ggagttaatttccaattttatttt 80190
>gb|AC000073.1| Homo sapiens Chromosome 22q11.2 Cosmid Clone 19d3 In DGCR Region, complete sequence Length = 39706 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 ggagtaaatttccaattttatttt 26 ||||| |||||||||||||||||| Sbjct: 16227 ggagttaatttccaattttatttt 16204
>gb|AC109347.3| Homo sapiens BAC clone RP11-73K9 from 4, complete sequence Length = 109668 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 caattttattttcataatagattt 38 ||||||||||||||||||| |||| Sbjct: 101646 caattttattttcataatatattt 101669
>gb|AC105756.5| Homo sapiens BAC clone RP11-78A21 from 4, complete sequence Length = 156394 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ccaattttattttcataata 33 |||||||||||||||||||| Sbjct: 24665 ccaattttattttcataata 24684
>gb|AC140899.3| Homo sapiens chromosome 16 clone RP11-792K9, complete sequence Length = 194490 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 370 agcagcagcaacctcctccgcaccagga 397 ||||||| ||||||||||| |||||||| Sbjct: 176973 agcagcaacaacctcctcctcaccagga 176946
>ref|XM_231763.3| PREDICTED: Rattus norvegicus nuclear factor, erythroid derived 2, like 3 (predicted) (Nfe2l3_predicted), mRNA Length = 3024 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 acatatatcatcttctagat 332 |||||||||||||||||||| Sbjct: 2643 acatatatcatcttctagat 2624
>gb|AF017113.1|AF017113 Bacillus subtilis 300-304 degree genomic sequence Length = 47739 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 gctggctaggaatgtcggcagaag 257 ||||||||||||||| |||||||| Sbjct: 35400 gctggctaggaatgttggcagaag 35423
>emb|AL954674.6| Zebrafish DNA sequence from clone CH211-282K23, complete sequence Length = 151174 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 taaatttccaattttatttt 26 |||||||||||||||||||| Sbjct: 12871 taaatttccaattttatttt 12890
>gb|AC000055.1|HSAC000055 Human PAC clone DJ073F11 from Xq23, complete sequence Length = 93578 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 ctagataagaagcagcaaaa 346 |||||||||||||||||||| Sbjct: 7414 ctagataagaagcagcaaaa 7395
>gb|AF213884.1|AF213884S1 Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (NFKB1) gene, complete cds Length = 190000 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 ggagtaaatttccaattttatttt 26 ||||| |||||||||||||||||| Sbjct: 51038 ggagttaatttccaattttatttt 51015
>emb|BX248136.12| Zebrafish DNA sequence from clone DKEY-81B15 in linkage group 20, complete sequence Length = 222316 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 attttattttcataatagat 36 |||||||||||||||||||| Sbjct: 188440 attttattttcataatagat 188421
>emb|AL049777.5|CNS00002 Human chromosome 14 DNA sequence BAC R-966I7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 170307 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 caattttattttcataatag 34 |||||||||||||||||||| Sbjct: 64931 caattttattttcataatag 64950
>gb|U63310.1|BSU63310 Bacillus subtilis hydroxymethylglutaryl-CoA reductase (NADPH) gene, partial cds and lipoprotein glyceryl transferase (lgt) gene, complete cds Length = 2144 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 gctggctaggaatgtcggcagaag 257 ||||||||||||||| |||||||| Sbjct: 1531 gctggctaggaatgttggcagaag 1554
>gb|L31645.1|HNNSPSP Helianthus annuus ribosomal protein S3a mRNA, complete cds Length = 982 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 414 caggcctgtcaagcttcacaccaacatc 441 |||||||||| | ||||||||||||||| Sbjct: 808 caggcctgtccaacttcacaccaacatc 781
>dbj|AB029635.1| Daucus carota mRNA for cyc07, complete cds Length = 1050 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 agcttcacaccaacatcctc 444 |||||||||||||||||||| Sbjct: 749 agcttcacaccaacatcctc 730 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,734,214 Number of Sequences: 3902068 Number of extensions: 5734214 Number of successful extensions: 120477 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120336 Number of HSP's gapped (non-prelim): 140 length of query: 446 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 424 effective length of database: 17,147,199,772 effective search space: 7270412703328 effective search space used: 7270412703328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
