>FA40B_HUMAN (Q9ULQ0) Protein FAM40B|
          Length = 834

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 354 EAMDESRFLSRNIENSVKLLQSLEKLT*W 268
           EA D S+F  RN+ + + LL+ L KLT W
Sbjct: 649 EAGDNSQFCWRNLFSCINLLRLLNKLTKW 677

>FA40B_MOUSE (Q8C9H6) Protein FAM40B|
          Length = 844

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 354 EAMDESRFLSRNIENSVKLLQSLEKLT*W 268
           EA D S+F  RN+ + + LL+ L KLT W
Sbjct: 659 EAGDNSQFCWRNLFSCINLLRLLNKLTKW 687

>PAI1_RAT (P20961) Plasminogen activator inhibitor 1 precursor (PAI-1)|
           (Endothelial plasminogen activator inhibitor) (PAI)
          Length = 402

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 65  RKCLTNAKYAI-YWDTPLLILMSHQRQLHKILGCTAVNLPLTKTN 196
           R  L NA Y    W TP L   +HQR  HK  G T +++P+   N
Sbjct: 185 RLVLVNALYFNGQWKTPFLEASTHQRLFHKSDGST-ISVPMMAQN 228

>PAI1_MOUSE (P22777) Plasminogen activator inhibitor 1 precursor (PAI-1)|
           (Endothelial plasminogen activator inhibitor) (PAI)
          Length = 402

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 65  RKCLTNAKY-AIYWDTPLLILMSHQRQLHKILGCTAVNLPL 184
           R  L NA Y +  W TP L   +HQR  HK  G T V++P+
Sbjct: 185 RLVLVNALYFSGQWKTPFLEASTHQRLFHKSDGST-VSVPM 224

>FA40A_BRARE (Q803T2) Protein FAM40A|
          Length = 813

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 354 EAMDESRFLSRNIENSVKLLQSLEKLT*W 268
           EA D ++F  RN+ + + LL+ L KLT W
Sbjct: 629 EAGDNNQFCWRNLFSCINLLRILNKLTKW 657

>FA40A_PONPY (Q5R7S4) Protein FAM40A|
          Length = 837

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 354 EAMDESRFLSRNIENSVKLLQSLEKLT*W 268
           EA D ++F  RN+ + + LL+ L KLT W
Sbjct: 653 EAGDSNQFCWRNLFSCINLLRILNKLTKW 681

>FA40A_MOUSE (Q8C079) Protein FAM40A|
          Length = 837

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 354 EAMDESRFLSRNIENSVKLLQSLEKLT*W 268
           EA D ++F  RN+ + + LL+ L KLT W
Sbjct: 653 EAGDNNQFCWRNLFSCINLLRILNKLTKW 681

>FA40A_MACFA (Q9GLZ5) Protein FAM40A|
          Length = 837

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 354 EAMDESRFLSRNIENSVKLLQSLEKLT*W 268
           EA D ++F  RN+ + + LL+ L KLT W
Sbjct: 653 EAGDSNQFCWRNLFSCINLLRILNKLTKW 681

>FA40A_HUMAN (Q5VSL9) Protein FAM40A|
          Length = 837

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 354 EAMDESRFLSRNIENSVKLLQSLEKLT*W 268
           EA D ++F  RN+ + + LL+ L KLT W
Sbjct: 653 EAGDSNQFCWRNLFSCINLLRILNKLTKW 681

>AL2SB_RAT (Q6AY08) Amyotrophic lateral sclerosis 2 chromosomal region|
           candidate gene 12 protein homolog
          Length = 411

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 156 WDAPL*ISRSQKLTSYHVKIIQQHKLPYEKEKRKLNGAIKLVSPNF 293
           W+    + R + L     +I ++ +L  E+EKRK+N +   V  NF
Sbjct: 243 WEKDEKMEREKILLQQKHRITKKFELESEEEKRKMNESFSTVMENF 288

>ISPH_ANASP (P58674) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 402

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 174 ISRSQKLTSYHVKIIQQHKLPYEKEKRKLNGAI 272
           IS+ + L SYH+ ++++ K     E R+LNG +
Sbjct: 326 ISQERGLPSYHIDVVERIKSINSIEHRQLNGEL 358

>NPAS3_MOUSE (Q9QZQ0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of|
           PAS protein 6) (MOP6)
          Length = 925

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 186 QKLTSYHVKIIQQHKLPYEKEKRKL 260
           Q +TSY  +I  QH LP + E RK+
Sbjct: 16  QGITSYQQRITAQHPLPNQSECRKI 40

>YPBR_BACSU (P54159) Hypothetical protein ypbR|
          Length = 1193

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 141 NYTKYWDAPL*ISRSQKLTSYHVKIIQQHKLPYEKEKRKLNGAIKLVSP 287
           ++T+ W+  +   +  +L   HVK+I    L YEK ++ +    KL  P
Sbjct: 692 SFTEKWEKAV---KKNRLQEEHVKLISNFLLAYEKYQQYIQEQKKLTIP 737

>ILF2_BRARE (Q6NZ06) Interleukin enhancer-binding factor 2 homolog|
          Length = 387

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 97  ILGHTAVDSHVSPAPTTQNIGMHRC 171
           +LGH+AV +H S  P   N+   RC
Sbjct: 247 LLGHSAVMNHPSRQPLPLNVAYRRC 271


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,972,699
Number of Sequences: 219361
Number of extensions: 864180
Number of successful extensions: 2033
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2033
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)