ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl19g11 |
|---|---|
| Clone Library Name | barley_pub |
>NU145_YEAST (P49687) Nucleoporin NUP145 precursor (EC 3.4.21.-) (Nuclear pore| protein NUP145) [Contains: Nucleoporin NUP145N (N-NUP145); Nucleoporin NUP145C (C-NUP145)] Length = 1317 Score = 53.1 bits (126), Expect = 2e-07 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Frame = -1 Query: 394 KPPVGEGLNKAALVTLLNIKCMNRKTDEQYTQGPRFDKFKEMLVKKAEEQGVEFISFDGA 215 KP +G GLN A++TL N+ +++KT + +F +F+ K + + +IS++ Sbjct: 535 KPMIGHGLNVPAIITLENVYPVDKKTKKPMKDTTKFAEFQVFDRKLRSMREMNYISYNPF 594 Query: 214 KGEWKFRVKHFSSYGF-GEAEADHLADSL 131 G W F+V HFS +G E +A+ D L Sbjct: 595 GGTWTFKVNHFSIWGLVNEEDAEIDEDDL 623
>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)| Length = 1778 Score = 50.1 bits (118), Expect = 1e-06 Identities = 28/81 (34%), Positives = 48/81 (59%) Frame = -1 Query: 391 PPVGEGLNKAALVTLLNIKCMNRKTDEQYTQGPRFDKFKEMLVKKAEEQGVEFISFDGAK 212 PP+GEGLN A++TL ++R+T E + P+ ++ + + + + EFI F+ Sbjct: 868 PPLGEGLNVPAIITLEKTWPLSRETREP-IKDPQNPRYIQHVKRLHRIKDTEFIDFN--D 924 Query: 211 GEWKFRVKHFSSYGFGEAEAD 149 G+W F+V+HFS YG + E + Sbjct: 925 GKWIFKVQHFSRYGLLDDEEE 945
>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98| kDa nucleoporin) Length = 937 Score = 50.1 bits (118), Expect = 1e-06 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%) Frame = -1 Query: 400 SKKPPVGEGLNKAALVTLLNIKCMNRKTDEQYTQGPRFDKFKEM-----LVKKAEEQGVE 236 ++KPPVGEGLN+ A VTL + + KT + P D+ ++ L + +QG + Sbjct: 805 NQKPPVGEGLNRKAEVTLDGVWPTD-KTSRCLIKSP--DRLADINYEGRLEAVSRKQGAQ 861 Query: 235 FISFDGAKGEWKFRVKHFSSYGFGEAEAD 149 F + G W F+V HFS YG +++ + Sbjct: 862 FKEYRPETGSWVFKVSHFSKYGLQDSDEE 890
>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor| [Contains: Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore complex protein Nup96 (Nucleoporin Nup96) (96 kDa nucleoporin)] Length = 1729 Score = 50.1 bits (118), Expect = 1e-06 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%) Frame = -1 Query: 400 SKKPPVGEGLNKAALVTLLNIKCMNRKTDEQYTQGPRFDKFKEM-----LVKKAEEQGVE 236 ++KPPVGEGLN+ A VTL + + KT + P D+ ++ L + +QG + Sbjct: 806 NQKPPVGEGLNRKAEVTLDGVWPTD-KTSRCLIKSP--DRLADINYEGRLEAVSRKQGAQ 862 Query: 235 FISFDGAKGEWKFRVKHFSSYGFGEAEAD 149 F + G W F+V HFS YG +++ + Sbjct: 863 FKEYRPETGSWVFKVSHFSKYGLQDSDEE 891
>UXAC_CLOPE (Q8XP14) Uronate isomerase (EC 5.3.1.12) (Glucuronate isomerase)| (Uronic isomerase) Length = 466 Score = 30.0 bits (66), Expect = 1.4 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = -1 Query: 346 LNIKC-MNRKTDEQYTQGPRFDKFKEMLVKKAEEQGVEFISFDGAKGEWKFRVKHFSSYG 170 +N KC +N + + + FKE + K AE VE SFD K + R+ +F Y Sbjct: 173 INFKCSVNPSFRPEKAMKIQNEGFKEYIGKLAEVSNVEIKSFDDLKKALEIRLDYF--YE 230 Query: 169 FGEAEADHLADSL*LYR 119 G DH + + Y+ Sbjct: 231 NGCMITDHSLERVVFYK 247
>UBP14_YEAST (P38237) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (Glucose-induced degradation protein 6) Length = 803 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = +3 Query: 192 TLNFHSPLAPSNEINSTPCSSAFFTSISLNLSNLGPCVYCSSV 320 T NF P P N +N CSS T NL C++C ++ Sbjct: 196 TENFQIPSKPENTVNLNQCSSCDLT------QNLWLCLHCGNI 232
>NU100_YEAST (Q02629) Nucleoporin NUP100/NSP100 (Nuclear pore protein| NUP100/NSP100) Length = 959 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/72 (26%), Positives = 33/72 (45%) Frame = -1 Query: 400 SKKPPVGEGLNKAALVTLLNIKCMNRKTDEQYTQGPRFDKFKEMLVKKAEEQGVEFISFD 221 S KP GEG+N VTL + ++++T + + K + K E +F S+D Sbjct: 885 SIKPEKGEGINVRCRVTLYSCFPIDKET-RKPIKNITHPLLKRSIAKLKENPVYKFESYD 943 Query: 220 GAKGEWKFRVKH 185 G + + + H Sbjct: 944 PVTGTYSYTIDH 955
>CDC25_YEAST (P04821) Cell division control protein 25| Length = 1589 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = +3 Query: 207 SPLAPSNEINSTPCSSAFFTSISLNLSNLGPCVYCSSVFLFMHLMFRRVT 356 SP+ S+ + SSAFF L L ++ P Y + + + H ++ R+T Sbjct: 1276 SPIHMSSSSLPSSASSAFFRLKKLKLLDIDPYTYATQLTVLEHDLYLRIT 1325
>KCC1G_RAT (Q7TNJ7) Calcium/calmodulin-dependent protein kinase type 1G (EC| 2.7.11.17) (CaM kinase IG) (CaM kinase I gamma) (CaMKI gamma) (CaMKI-gamma) (CaM-KI gamma) (CaMKIG) (CaMK-like CREB kinase III) (CLICK III) Length = 476 Score = 29.3 bits (64), Expect = 2.4 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%) Frame = +3 Query: 150 SASASPNP*ELKCF---TLNFHSPLAPSNE--INSTPCSSAFFTSISLNLSNLGPCVYCS 314 S ++P L C +L S L P + + + PC S LN+ N G YCS Sbjct: 379 SRPSAPGGRSLNCLVNGSLRISSSLVPMQQGPLATGPCGCC---SSCLNIGNKGKSSYCS 435 Query: 315 SVFLFMHLMFRRVTKAALFRPSPTGG 392 LF ++ K+ + P GG Sbjct: 436 EPTLFRKANKKQNFKSEVMVPVKAGG 461
>CXI8_CONRA (Q7Z091) I-superfamily conotoxin R11.8 (r11d)| Length = 41 Score = 28.5 bits (62), Expect = 4.0 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -2 Query: 135 PCSFIDRCCNCCL 97 PCS+ CCNCCL Sbjct: 8 PCSYHADCCNCCL 20
>CXI17_CONRA (Q7Z093) I-superfamily conotoxin R11.17| Length = 46 Score = 28.5 bits (62), Expect = 4.0 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -2 Query: 135 PCSFIDRCCNCCL 97 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23
>CXI14_CONRA (Q7Z092) I-superfamily conotoxin R11.14 (r11b)| Length = 46 Score = 28.5 bits (62), Expect = 4.0 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -2 Query: 135 PCSFIDRCCNCCL 97 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23
>RAD5_CRYNE (Q5KPG8) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1198 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 8/64 (12%) Frame = -1 Query: 373 LNKAALVTLLNIKCMNRKTDEQYTQGPR--------FDKFKEMLVKKAEEQGVEFISFDG 218 L K LVT ++ + R+ +E + P+ F F +++ +QG+ ++ FDG Sbjct: 1008 LGKVDLVTSTKLRALLRQLEEIRQEDPKAKALVFSQFTSFLDLIEATLTKQGIRWLRFDG 1067 Query: 217 AKGE 206 + Sbjct: 1068 TMSQ 1071
>DPO3A_THEMA (Q9ZHG4) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 842 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/41 (31%), Positives = 25/41 (60%) Frame = -1 Query: 349 LLNIKCMNRKTDEQYTQGPRFDKFKEMLVKKAEEQGVEFIS 227 +LN + + + + ++ P+ + E+L+KKAE G E+IS Sbjct: 141 ILNAEAYDLRVNHRFPTPPK--NWNELLIKKAEPLGEEYIS 179
>KCC1G_MOUSE (Q91VB2) Calcium/calmodulin-dependent protein kinase type 1G (EC| 2.7.11.17) (CaM kinase IG) (CaM kinase I gamma) (CaMKI gamma) (CaMKI-gamma) (CaM-KI gamma) (CaMKIG) (CaMK-like CREB kinase III) (CLICK III) Length = 477 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Frame = +3 Query: 192 TLNFHSPLAPSNE--INSTPCSSAFFTSISLNLSNLGPCVYCSSVFLFMHLMFRRVTKAA 365 +L S L P + + + PC S LN+ N G YCS LF ++ K+ Sbjct: 397 SLRISSSLVPMQQGPLATGPCGCC---SSCLNIGNKGKSSYCSEPTLFRKANKKQNFKSE 453 Query: 366 LFRPSPTGG 392 + P GG Sbjct: 454 VMVPVKAGG 462
>CXI7_CONRA (Q7Z095) I-superfamily conotoxin R11.7| Length = 46 Score = 27.7 bits (60), Expect = 6.9 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -2 Query: 135 PCSFIDRCCNCCL 97 PC + CCNCCL Sbjct: 11 PCEYHSDCCNCCL 23
>DPOL_HBVDR (P03157) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 843 Score = 27.7 bits (60), Expect = 6.9 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 14/104 (13%) Frame = +3 Query: 33 PDQISYIDQSYIESS--VHQSSKRGSNYNTYR*SYKESARWSA------------SASPN 170 P +ID S +S +HQS+ R + Y+ S ++S+ A S S Sbjct: 259 PSGSGHIDNSASSTSSCLHQSAVRKTAYSHLSTSKRQSSSGHAVEFHNIPPSSARSQSEG 318 Query: 171 P*ELKCFTLNFHSPLAPSNEINSTPCSSAFFTSISLNLSNLGPC 302 P C+ L F NS PCS T I L + GPC Sbjct: 319 P-IFSCWWLQFR---------NSKPCSDYCLTHIVNLLEDWGPC 352
>DPOL_HBVD4 (P12933) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 730 Score = 27.7 bits (60), Expect = 6.9 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 11/92 (11%) Frame = +3 Query: 60 SYIESSVHQSSKRGSNYNTYR*SYKESARWSA---------SASPNP*E--LKCFTLNFH 206 S S +HQS+ R + Y+ S ++S+ A SA P L C+ L F Sbjct: 270 SSTSSCLHQSAVRKTAYSHLSTSKRQSSSGHAVELHNIPPSSARPQSEGPILSCWWLQFR 329 Query: 207 SPLAPSNEINSTPCSSAFFTSISLNLSNLGPC 302 NS PCS T I L + GPC Sbjct: 330 ---------NSKPCSDYCLTHIVNLLEDWGPC 352
>YB64_YEAST (P38314) Protein YBR214W| Length = 527 Score = 27.3 bits (59), Expect = 9.0 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = +3 Query: 69 ESSVHQSSKRGSNYNTYR*SYKESARWSAS-ASPNP*ELKCFTLNFHSPLAPSNEINSTP 245 ESS SS + NT + +A+ SA+ A+P +LN HSPL + E +P Sbjct: 400 ESSTSASSTNLTAANTAANAVSATAQSSANGATPMSKSSSSTSLNSHSPLMTAMEDPPSP 459 Query: 246 CSSA 257 SSA Sbjct: 460 RSSA 463 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,471,013 Number of Sequences: 219361 Number of extensions: 1036594 Number of successful extensions: 3054 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2978 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3048 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
