ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome... 64 3e-07
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
3dbj|AK058944.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 3e-07
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 64 3e-07
5gb|AC155344.1| Brassica rapa subsp. pekinensis clone KBrH080A08,... 44 0.30
6gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 44 0.30
7gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 44 0.30
8gb|AC007696.5|AC007696 Drosophila melanogaster, chromosome 2L, r... 42 1.2
9ref|XM_215540.3| PREDICTED: Rattus norvegicus phosphodiesterase ... 42 1.2
10gb|AE003620.3| Drosophila melanogaster chromosome 2L, section 29... 42 1.2
11gb|AC004532.1|AC004532 Drosophila melanogaster DNA sequence (P1s... 42 1.2
12gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complet... 40 4.7
13gb|AC130673.10| Mus musculus chromosome 15, clone RP24-97F15, co... 40 4.7
14gb|AC149293.21| Medicago truncatula clone mth2-78c5, complete se... 40 4.7
15gb|AC147780.10| Medicago truncatula clone mth2-36n9, complete se... 40 4.7
16emb|BX908797.10| Zebrafish DNA sequence from clone DKEY-43P13 in... 40 4.7
17emb|AL355611.11| Human DNA sequence from clone RP11-430K22 on ch... 40 4.7
18gb|AC134420.8| Mus musculus chromosome 15, clone RP23-478J5, com... 40 4.7
19emb|BX890609.7| Zebrafish DNA sequence from clone DKEY-56E5, com... 40 4.7
20gb|AC092221.1|AC092221 Drosophila melanogaster, chromosome 2L, r... 40 4.7
21dbj|AK015671.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 4.7
22emb|BX005349.6| Zebrafish DNA sequence from clone DKEY-111D8 in ... 40 4.7
23gb|AY109011.1| Zea mays PCO078615 mRNA sequence 40 4.7
24gb|AE003586.3| Drosophila melanogaster chromosome 2L, section 5 ... 40 4.7
25gb|AC132574.3| Mus musculus BAC clone RP24-421H8 from 1, complet... 40 4.7
26gb|AC003121.1|AC003121 Drosophila melanogaster (P1 DS00329 (D89)... 40 4.7
27emb|AL935273.6| Zebrafish DNA sequence from clone CH211-274L13, ... 40 4.7

>gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019A16,
              complete sequence
          Length = 175425

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                          
Query: 282    ttaagggttcttccaccttttccttgcatgtaaccaggatggtttctgtaattgtcacca 341
              |||||||||||||| ||||| |||||||||||| || | | |||||||  ||| ||||||
Sbjct: 136450 ttaagggttcttccgcctttcccttgcatgtaagcatggttgtttctgacattatcacca 136509

                              
Query: 342    gtcctgttgtgaagat 357
              |||||  |||||||||
Sbjct: 136510 gtcctactgtgaagat 136525



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                            
Query: 282      ttaagggttcttccaccttttccttgcatgtaaccaggatggtttctgtaattgtcacca 341
                |||||||||||||| ||||| |||||||||||| || | | |||||||  ||| ||||||
Sbjct: 19267662 ttaagggttcttccgcctttcccttgcatgtaagcatggttgtttctgacattatcacca 19267721

                                
Query: 342      gtcctgttgtgaagat 357
                |||||  |||||||||
Sbjct: 19267722 gtcctactgtgaagat 19267737



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>dbj|AK058944.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-H09, full
           insert sequence
          Length = 972

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 65/76 (85%)
 Strand = Plus / Minus

                                                                       
Query: 282 ttaagggttcttccaccttttccttgcatgtaaccaggatggtttctgtaattgtcacca 341
           |||||||||||||| ||||| |||||||||||| || | | |||||||  ||| ||||||
Sbjct: 175 ttaagggttcttccgcctttcccttgcatgtaagcatggttgtttctgacattatcacca 116

                           
Query: 342 gtcctgttgtgaagat 357
           |||||  |||||||||
Sbjct: 115 gtcctactgtgaagat 100



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                            
Query: 282      ttaagggttcttccaccttttccttgcatgtaaccaggatggtttctgtaattgtcacca 341
                |||||||||||||| ||||| |||||||||||| || | | |||||||  ||| ||||||
Sbjct: 19427211 ttaagggttcttccgcctttcccttgcatgtaagcatggttgtttctgacattatcacca 19427270

                                
Query: 342      gtcctgttgtgaagat 357
                |||||  |||||||||
Sbjct: 19427271 gtcctactgtgaagat 19427286



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>gb|AC155344.1| Brassica rapa subsp. pekinensis clone KBrH080A08, complete sequence
          Length = 110038

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 33    tttgtttgcatttacgtttgcgtttc 58
             ||||||||||||||| ||||||||||
Sbjct: 46436 tttgtttgcatttacatttgcgtttc 46411



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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 286     gggttcttccaccttttccttg 307
               ||||||||||||||||||||||
Sbjct: 2066273 gggttcttccaccttttccttg 2066252



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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 286     gggttcttccaccttttccttg 307
               ||||||||||||||||||||||
Sbjct: 2216220 gggttcttccaccttttccttg 2216241



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>gb|AC007696.5|AC007696 Drosophila melanogaster, chromosome 2L, region 28B, BAC clone BACR14I17,
              complete sequence
          Length = 157948

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 36     gtttgcatttacgtttgcgtttcat 60
              ||||||||| |||||||||||||||
Sbjct: 145441 gtttgcattcacgtttgcgtttcat 145465



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>ref|XM_215540.3| PREDICTED: Rattus norvegicus phosphodiesterase 7A (Pde7a), mRNA
          Length = 3343

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 292  ttccaccttttccttgcatgt 312
            |||||||||||||||||||||
Sbjct: 2595 ttccaccttttccttgcatgt 2575



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>gb|AE003620.3| Drosophila melanogaster chromosome 2L, section 29 of 83 of the complete
              sequence
          Length = 251142

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 36     gtttgcatttacgtttgcgtttcat 60
              ||||||||| |||||||||||||||
Sbjct: 123173 gtttgcattcacgtttgcgtttcat 123197



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>gb|AC004532.1|AC004532 Drosophila melanogaster DNA sequence (P1s DS03465 (D149) and DS08544
             (D187)), complete sequence
          Length = 90736

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 36    gtttgcatttacgtttgcgtttcat 60
             ||||||||| |||||||||||||||
Sbjct: 42457 gtttgcattcacgtttgcgtttcat 42481



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>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 281    tttaagggttcttccaccttttcc 304
              ||||||| ||||||||||||||||
Sbjct: 667630 tttaaggtttcttccaccttttcc 667607



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>gb|AC130673.10| Mus musculus chromosome 15, clone RP24-97F15, complete sequence
          Length = 136395

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   gttcttccaccttttccttg 307
             ||||||||||||||||||||
Sbjct: 75517 gttcttccaccttttccttg 75536



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>gb|AC149293.21| Medicago truncatula clone mth2-78c5, complete sequence
          Length = 111412

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     gtttcattttttgacacaaa 73
              ||||||||||||||||||||
Sbjct: 106879 gtttcattttttgacacaaa 106898



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>gb|AC147780.10| Medicago truncatula clone mth2-36n9, complete sequence
          Length = 102831

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    gtttcattttttgacacaaa 73
             ||||||||||||||||||||
Sbjct: 70316 gtttcattttttgacacaaa 70335



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>emb|BX908797.10| Zebrafish DNA sequence from clone DKEY-43P13 in linkage group 3, complete
              sequence
          Length = 222385

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    agggttcttccaccttttcc 304
              ||||||||||||||||||||
Sbjct: 193934 agggttcttccaccttttcc 193915



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>emb|AL355611.11| Human DNA sequence from clone RP11-430K22 on chromosome 13 Contains a
             60S ribosomal protein L12 (RPL12) pseudogene and a
             pseudogene similar to part of ribosomal protein S3A
             (RPS3A)(FTE1), complete sequence
          Length = 176939

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   ttccttgcatgtaaccagga 320
             ||||||||||||||||||||
Sbjct: 45604 ttccttgcatgtaaccagga 45623



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>gb|AC134420.8| Mus musculus chromosome 15, clone RP23-478J5, complete sequence
          Length = 190455

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 288  gttcttccaccttttccttg 307
            ||||||||||||||||||||
Sbjct: 5240 gttcttccaccttttccttg 5259



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>emb|BX890609.7| Zebrafish DNA sequence from clone DKEY-56E5, complete sequence
          Length = 228713

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    gtttgcgtttcattttttgacaca 71
             ||||||||||||| ||||||||||
Sbjct: 45814 gtttgcgtttcatattttgacaca 45791



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>gb|AC092221.1|AC092221 Drosophila melanogaster, chromosome 2L, region 22A-22C, BAC clone
              BACR16D07, complete sequence
          Length = 170868

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 28     cgtcatttgtttgcatttacgttt 51
              |||||||||||| |||||||||||
Sbjct: 112114 cgtcatttgtttccatttacgttt 112091



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>dbj|AK015671.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930500N06 product:hypothetical protein,
           full insert sequence
          Length = 847

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 73  acacgtccttaatacagagacaaaacct 100
           |||||||  |||||||||||||||||||
Sbjct: 219 acacgtcgataatacagagacaaaacct 246



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>emb|BX005349.6| Zebrafish DNA sequence from clone DKEY-111D8 in linkage group 10,
             complete sequence
          Length = 103469

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 281   tttaagggttcttccaccttttcc 304
             ||||||||||||| ||||||||||
Sbjct: 67646 tttaagggttcttacaccttttcc 67623



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>gb|AY109011.1| Zea mays PCO078615 mRNA sequence
          Length = 1368

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 141 tgcattccatatcaaagcaa 160
           ||||||||||||||||||||
Sbjct: 548 tgcattccatatcaaagcaa 529



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>gb|AE003586.3| Drosophila melanogaster chromosome 2L, section 5 of 83 of the complete
              sequence
          Length = 306696

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 28     cgtcatttgtttgcatttacgttt 51
              |||||||||||| |||||||||||
Sbjct: 184985 cgtcatttgtttccatttacgttt 184962



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>gb|AC132574.3| Mus musculus BAC clone RP24-421H8 from 1, complete sequence
          Length = 173036

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 203    caaacttcagctccacctgc 222
              ||||||||||||||||||||
Sbjct: 126753 caaacttcagctccacctgc 126772



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>gb|AC003121.1|AC003121 Drosophila melanogaster (P1 DS00329 (D89)) DNA sequence, complete
             sequence
          Length = 69822

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 28    cgtcatttgtttgcatttacgttt 51
             |||||||||||| |||||||||||
Sbjct: 26873 cgtcatttgtttccatttacgttt 26896



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>emb|AL935273.6| Zebrafish DNA sequence from clone CH211-274L13, complete sequence
          Length = 175839

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 281   tttaagggttcttccaccttttcc 304
             ||||||||||||| ||||||||||
Sbjct: 31768 tttaagggttcttacaccttttcc 31791


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,190,482
Number of Sequences: 3902068
Number of extensions: 3190482
Number of successful extensions: 56611
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56490
Number of HSP's gapped (non-prelim): 121
length of query: 357
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 335
effective length of database: 17,147,199,772
effective search space: 5744311923620
effective search space used: 5744311923620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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