Clone Name | rbastl19g09 |
---|---|
Clone Library Name | barley_pub |
>gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019A16, complete sequence Length = 175425 Score = 63.9 bits (32), Expect = 3e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 282 ttaagggttcttccaccttttccttgcatgtaaccaggatggtttctgtaattgtcacca 341 |||||||||||||| ||||| |||||||||||| || | | ||||||| ||| |||||| Sbjct: 136450 ttaagggttcttccgcctttcccttgcatgtaagcatggttgtttctgacattatcacca 136509 Query: 342 gtcctgttgtgaagat 357 ||||| ||||||||| Sbjct: 136510 gtcctactgtgaagat 136525
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 63.9 bits (32), Expect = 3e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 282 ttaagggttcttccaccttttccttgcatgtaaccaggatggtttctgtaattgtcacca 341 |||||||||||||| ||||| |||||||||||| || | | ||||||| ||| |||||| Sbjct: 19267662 ttaagggttcttccgcctttcccttgcatgtaagcatggttgtttctgacattatcacca 19267721 Query: 342 gtcctgttgtgaagat 357 ||||| ||||||||| Sbjct: 19267722 gtcctactgtgaagat 19267737
>dbj|AK058944.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-H09, full insert sequence Length = 972 Score = 63.9 bits (32), Expect = 3e-07 Identities = 65/76 (85%) Strand = Plus / Minus Query: 282 ttaagggttcttccaccttttccttgcatgtaaccaggatggtttctgtaattgtcacca 341 |||||||||||||| ||||| |||||||||||| || | | ||||||| ||| |||||| Sbjct: 175 ttaagggttcttccgcctttcccttgcatgtaagcatggttgtttctgacattatcacca 116 Query: 342 gtcctgttgtgaagat 357 ||||| ||||||||| Sbjct: 115 gtcctactgtgaagat 100
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 63.9 bits (32), Expect = 3e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 282 ttaagggttcttccaccttttccttgcatgtaaccaggatggtttctgtaattgtcacca 341 |||||||||||||| ||||| |||||||||||| || | | ||||||| ||| |||||| Sbjct: 19427211 ttaagggttcttccgcctttcccttgcatgtaagcatggttgtttctgacattatcacca 19427270 Query: 342 gtcctgttgtgaagat 357 ||||| ||||||||| Sbjct: 19427271 gtcctactgtgaagat 19427286
>gb|AC155344.1| Brassica rapa subsp. pekinensis clone KBrH080A08, complete sequence Length = 110038 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Minus Query: 33 tttgtttgcatttacgtttgcgtttc 58 ||||||||||||||| |||||||||| Sbjct: 46436 tttgtttgcatttacatttgcgtttc 46411
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 286 gggttcttccaccttttccttg 307 |||||||||||||||||||||| Sbjct: 2066273 gggttcttccaccttttccttg 2066252
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 286 gggttcttccaccttttccttg 307 |||||||||||||||||||||| Sbjct: 2216220 gggttcttccaccttttccttg 2216241
>gb|AC007696.5|AC007696 Drosophila melanogaster, chromosome 2L, region 28B, BAC clone BACR14I17, complete sequence Length = 157948 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 36 gtttgcatttacgtttgcgtttcat 60 ||||||||| ||||||||||||||| Sbjct: 145441 gtttgcattcacgtttgcgtttcat 145465
>ref|XM_215540.3| PREDICTED: Rattus norvegicus phosphodiesterase 7A (Pde7a), mRNA Length = 3343 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 292 ttccaccttttccttgcatgt 312 ||||||||||||||||||||| Sbjct: 2595 ttccaccttttccttgcatgt 2575
>gb|AE003620.3| Drosophila melanogaster chromosome 2L, section 29 of 83 of the complete sequence Length = 251142 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 36 gtttgcatttacgtttgcgtttcat 60 ||||||||| ||||||||||||||| Sbjct: 123173 gtttgcattcacgtttgcgtttcat 123197
>gb|AC004532.1|AC004532 Drosophila melanogaster DNA sequence (P1s DS03465 (D149) and DS08544 (D187)), complete sequence Length = 90736 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 36 gtttgcatttacgtttgcgtttcat 60 ||||||||| ||||||||||||||| Sbjct: 42457 gtttgcattcacgtttgcgtttcat 42481
>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome Length = 2401520 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 tttaagggttcttccaccttttcc 304 ||||||| |||||||||||||||| Sbjct: 667630 tttaaggtttcttccaccttttcc 667607
>gb|AC130673.10| Mus musculus chromosome 15, clone RP24-97F15, complete sequence Length = 136395 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 gttcttccaccttttccttg 307 |||||||||||||||||||| Sbjct: 75517 gttcttccaccttttccttg 75536
>gb|AC149293.21| Medicago truncatula clone mth2-78c5, complete sequence Length = 111412 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 gtttcattttttgacacaaa 73 |||||||||||||||||||| Sbjct: 106879 gtttcattttttgacacaaa 106898
>gb|AC147780.10| Medicago truncatula clone mth2-36n9, complete sequence Length = 102831 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 gtttcattttttgacacaaa 73 |||||||||||||||||||| Sbjct: 70316 gtttcattttttgacacaaa 70335
>emb|BX908797.10| Zebrafish DNA sequence from clone DKEY-43P13 in linkage group 3, complete sequence Length = 222385 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 agggttcttccaccttttcc 304 |||||||||||||||||||| Sbjct: 193934 agggttcttccaccttttcc 193915
>emb|AL355611.11| Human DNA sequence from clone RP11-430K22 on chromosome 13 Contains a 60S ribosomal protein L12 (RPL12) pseudogene and a pseudogene similar to part of ribosomal protein S3A (RPS3A)(FTE1), complete sequence Length = 176939 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 ttccttgcatgtaaccagga 320 |||||||||||||||||||| Sbjct: 45604 ttccttgcatgtaaccagga 45623
>gb|AC134420.8| Mus musculus chromosome 15, clone RP23-478J5, complete sequence Length = 190455 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 gttcttccaccttttccttg 307 |||||||||||||||||||| Sbjct: 5240 gttcttccaccttttccttg 5259
>emb|BX890609.7| Zebrafish DNA sequence from clone DKEY-56E5, complete sequence Length = 228713 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 gtttgcgtttcattttttgacaca 71 ||||||||||||| |||||||||| Sbjct: 45814 gtttgcgtttcatattttgacaca 45791
>gb|AC092221.1|AC092221 Drosophila melanogaster, chromosome 2L, region 22A-22C, BAC clone BACR16D07, complete sequence Length = 170868 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 cgtcatttgtttgcatttacgttt 51 |||||||||||| ||||||||||| Sbjct: 112114 cgtcatttgtttccatttacgttt 112091
>dbj|AK015671.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930500N06 product:hypothetical protein, full insert sequence Length = 847 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 73 acacgtccttaatacagagacaaaacct 100 ||||||| ||||||||||||||||||| Sbjct: 219 acacgtcgataatacagagacaaaacct 246
>emb|BX005349.6| Zebrafish DNA sequence from clone DKEY-111D8 in linkage group 10, complete sequence Length = 103469 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 tttaagggttcttccaccttttcc 304 ||||||||||||| |||||||||| Sbjct: 67646 tttaagggttcttacaccttttcc 67623
>gb|AY109011.1| Zea mays PCO078615 mRNA sequence Length = 1368 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tgcattccatatcaaagcaa 160 |||||||||||||||||||| Sbjct: 548 tgcattccatatcaaagcaa 529
>gb|AE003586.3| Drosophila melanogaster chromosome 2L, section 5 of 83 of the complete sequence Length = 306696 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 cgtcatttgtttgcatttacgttt 51 |||||||||||| ||||||||||| Sbjct: 184985 cgtcatttgtttccatttacgttt 184962
>gb|AC132574.3| Mus musculus BAC clone RP24-421H8 from 1, complete sequence Length = 173036 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 caaacttcagctccacctgc 222 |||||||||||||||||||| Sbjct: 126753 caaacttcagctccacctgc 126772
>gb|AC003121.1|AC003121 Drosophila melanogaster (P1 DS00329 (D89)) DNA sequence, complete sequence Length = 69822 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 cgtcatttgtttgcatttacgttt 51 |||||||||||| ||||||||||| Sbjct: 26873 cgtcatttgtttccatttacgttt 26896
>emb|AL935273.6| Zebrafish DNA sequence from clone CH211-274L13, complete sequence Length = 175839 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 tttaagggttcttccaccttttcc 304 ||||||||||||| |||||||||| Sbjct: 31768 tttaagggttcttacaccttttcc 31791 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,190,482 Number of Sequences: 3902068 Number of extensions: 3190482 Number of successful extensions: 56611 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56490 Number of HSP's gapped (non-prelim): 121 length of query: 357 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 335 effective length of database: 17,147,199,772 effective search space: 5744311923620 effective search space used: 5744311923620 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)