>TAT_HV1JR (P20879) TAT protein (Transactivating regulatory protein)|
          Length = 101

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -1

Query: 107 CTMCAVA*LCLECLRCFTVDHLSLFYG 27
           CT C     CL C  CFT   L + YG
Sbjct: 22  CTNCYCKKCCLHCQVCFTTKGLGISYG 48

>USH2A_HUMAN (O75445) Usherin precursor (Usher syndrome type-2A protein) (Usher|
            syndrome type IIa protein)
          Length = 5202

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = -3

Query: 162  CCQNSVLAMS---CNAVNRQALYYVCCGMIMSGML 67
            CC+  ++  S   CN V    L YVC   I +GM+
Sbjct: 3358 CCETELIPKSQKCCNGVGYNPLKYVCSDKISTGMM 3392

>VCAP_EHV1V (Q6S6S9) Major capsid protein (MCP) (Capsid protein VP5)|
          Length = 1376

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -3

Query: 258 CEIKSLIVKTIQSY*---HEHRLIYHVYLVMMASLCCQNSVLAMSCNAVNRQALYYV 97
           C +  LI++ I SY    H+   + + Y++M  +    N  L   C A+ R  L +V
Sbjct: 641 CALARLIIQCIVSYWRNTHQVAFVNNFYMIMYINAYLGNGELPEECTAIYRDLLEHV 697

>VCAP_EHV1B (P28920) Major capsid protein (MCP) (Capsid protein VP5)|
          Length = 1376

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -3

Query: 258 CEIKSLIVKTIQSY*---HEHRLIYHVYLVMMASLCCQNSVLAMSCNAVNRQALYYV 97
           C +  LI++ I SY    H+   + + Y++M  +    N  L   C A+ R  L +V
Sbjct: 641 CALARLIIQCIVSYWRNTHQVAFVNNFYMIMYINAYLGNGELPEECTAIYRDLLEHV 697

>TAT_HV1SC (P05906) TAT protein (Transactivating regulatory protein)|
          Length = 101

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -1

Query: 107 CTMCAVA*LCLECLRCFTVDHLSLFYG 27
           CT C     C  C  CFT   L + YG
Sbjct: 22  CTSCYCKKCCFHCQVCFTTKGLGISYG 48

>TAT_HV1BR (P04610) TAT protein (Transactivating regulatory protein)|
          Length = 86

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -1

Query: 107 CTMCAVA*LCLECLRCFTVDHLSLFYG 27
           CT C     C  C  CFT   L + YG
Sbjct: 22  CTTCYCKKCCFHCQVCFTTKALGISYG 48


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,393,796
Number of Sequences: 219361
Number of extensions: 578310
Number of successful extensions: 1035
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)