ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LPAT1_ARATH (Q8GXU8) 1-acyl-sn-glycerol-3-phosphate acyltransfer... 31 0.98
2LPXB_PSESM (Q886N0) Lipid-A-disaccharide synthase (EC 2.4.1.182) 30 2.2
3LPAT1_BRANA (Q9LLY4) 1-acyl-sn-glycerol-3-phosphate acyltransfer... 30 2.2
4SPL12_ARATH (Q9S7P5) Squamosa promoter-binding-like protein 12 29 3.7
5LPXB_PSEPK (Q88MG7) Lipid-A-disaccharide synthase (EC 2.4.1.182) 28 6.3

>LPAT1_ARATH (Q8GXU8) 1-acyl-sn-glycerol-3-phosphate acyltransferase 1,|
           chloroplast precursor (EC 2.3.1.51) (Lysophosphatidyl
           acyltransferase 1)
          Length = 356

 Score = 30.8 bits (68), Expect = 0.98
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 237 LSCLGRCFSLLKRGLRFFFIFPEG 166
           + CL RC  LLK+G   FF FPEG
Sbjct: 253 VDCLKRCMELLKKGASVFF-FPEG 275



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>LPXB_PSESM (Q886N0) Lipid-A-disaccharide synthase (EC 2.4.1.182)|
          Length = 380

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 145 VWCWRHTEVLRKNIGCLLLYTVLLMAYPCFRKKG 44
           VW WR   VL+   GC L+ T+L      + +KG
Sbjct: 123 VWAWRQKRVLKIREGCDLMLTLLPFEARFYEEKG 156



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>LPAT1_BRANA (Q9LLY4) 1-acyl-sn-glycerol-3-phosphate acyltransferase 1,|
           chloroplast precursor (EC 2.3.1.51)
          Length = 344

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 237 LSCLGRCFSLLKRGLRFFFIFPEG 166
           + CL RC  L+K+G   FF FPEG
Sbjct: 239 VDCLKRCMELVKKGASVFF-FPEG 261



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>SPL12_ARATH (Q9S7P5) Squamosa promoter-binding-like protein 12|
          Length = 927

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 41  FSFLSETRISHEKYCIQKKTTYILSEHLCVPPTPYMLLS-FGIPSGKMKKNLNPL 202
           F FL E  +  E  C+ KK   IL E   V P+P   LS   +    ++KN  P+
Sbjct: 675 FKFLIEFSMDREWCCVMKKLLNILFEEGTVDPSPDAALSELCLLHRAVRKNSKPM 729



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>LPXB_PSEPK (Q88MG7) Lipid-A-disaccharide synthase (EC 2.4.1.182)|
          Length = 375

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 145 VWCWRHTEVLRKNIGCLLLYTVLLMAYPCFRKKG 44
           VW WR   VL+   GC L+ T+L      + ++G
Sbjct: 122 VWAWRQKRVLKIREGCDLMLTLLPFEARFYEEQG 155


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,990,979
Number of Sequences: 219361
Number of extensions: 661896
Number of successful extensions: 1873
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1873
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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