ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in c... 31 0.65
2CYPC_BACSU (O31440) Cytochrome P450 152A1 (EC 1.14.-.-) (P450BsB... 30 1.5
3S230_PLAFO (P68875) Transmission-blocking target antigen S230 pr... 28 4.2
4S230_PLAF7 (P68874) Transmission-blocking target antigen S230 pr... 28 4.2
5CYNT_SYNP7 (P27134) Carbonic anhydrase (EC 4.2.1.1) 28 4.2
6ALP6_SCHPO (Q9USQ2) Spindle pole body component alp6 (Altered po... 28 4.2
7CD2_HORSE (P37998) T-cell surface antigen CD2 precursor 28 7.2
8RNAS8_MIOTA (Q8SPZ7) Ribonuclease 8 precursor (EC 3.1.27.-) (RNa... 27 9.4
9RPP13_ARATH (Q9M667) Disease resistance protein RPP13 (Resistanc... 27 9.4

>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III|
          Length = 654

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 14  QKKVHVEYENFNKLQSTNILLKSLVAEVHFITYKDATSDLPVL*C 148
           +K++   +  F K++   IL K  +A VHF+  +DA   +  L C
Sbjct: 312 EKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLSC 356



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>CYPC_BACSU (O31440) Cytochrome P450 152A1 (EC 1.14.-.-) (P450BsBeta) (Fatty|
           acid beta-hydroxylase)
          Length = 417

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +1

Query: 163 LTAQVPHVVSSQESNFTLK---CYINNRTLALNKRKITMSTRAQNFICITTLEAS 318
           +  Q+PH  S   S   LK    +I NRT   N          +NFIC+T  EA+
Sbjct: 1   MNEQIPHDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAA 55



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>S230_PLAFO (P68875) Transmission-blocking target antigen S230 precursor|
          Length = 3135

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 163  LTAQVPHVVSSQESNFTLKCYINNRTLALNKRKITMSTRAQNFI 294
            +T + PH       NFT K Y  N +L  N +KI ++   +NF+
Sbjct: 2486 VTIKCPHT-----KNFTPKDYFPNSSLITNDKKIVITFDKKNFV 2524



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>S230_PLAF7 (P68874) Transmission-blocking target antigen S230 precursor|
          Length = 3135

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 163  LTAQVPHVVSSQESNFTLKCYINNRTLALNKRKITMSTRAQNFI 294
            +T + PH       NFT K Y  N +L  N +KI ++   +NF+
Sbjct: 2486 VTIKCPHT-----KNFTPKDYFPNSSLITNDKKIVITFDKKNFV 2524



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>CYNT_SYNP7 (P27134) Carbonic anhydrase (EC 4.2.1.1)|
          Length = 272

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
 Frame = -2

Query: 329 VEVIEASNVVMQMKFWALVDIVIFLLFSARVLLFM*HFKVKFD--------SWDDTT*GT 174
           VE++ A NV+ Q++      IV   LF  ++ +F   ++V+          S DDT    
Sbjct: 147 VEILVAENVLTQIENLKTYPIVRSRLFQGKLQIFGWIYEVESGEVLQISRTSSDDTGIDE 206

Query: 173 CAVRNPGHDIKELADHSWHPYT 108
           C VR PG   K +      P T
Sbjct: 207 CPVRLPGSQEKAILGRCVVPLT 228



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>ALP6_SCHPO (Q9USQ2) Spindle pole body component alp6 (Altered polarity protein|
           6)
          Length = 832

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 178 PHVVSSQESNFTLKCYINNRTLALNKRKITMSTRAQNFIC-ITTLEASITSTCLL 339
           P V  S + +   K +IN+++LAL   K  +S    NF+  I +L++ I +   L
Sbjct: 251 PSVSQSIDGDNVSKAFINDQSLALQSLKSVISKELTNFLALIASLDSQIRADASL 305



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>CD2_HORSE (P37998) T-cell surface antigen CD2 precursor|
          Length = 347

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +1

Query: 202 SNFTLKCYINNRTLALNKRKITMSTRAQN----FICITTLEASITSTCLLI 342
           ++F LK Y+N R +  + RK+ +  RA N    F C      S  S+ ++I
Sbjct: 147 TDFELKLYLNGRMIQKSPRKVIVYKRASNQIASFKCTANNTVSEESSSVVI 197



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>RNAS8_MIOTA (Q8SPZ7) Ribonuclease 8 precursor (EC 3.1.27.-) (RNase 8)|
          Length = 154

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 205 LILGMTLHEVPVQLEILDMTSKNWQITRGI 116
           L+LG+ + ++PV  +  DMTS  W  T+ +
Sbjct: 14  LLLGLRVAQIPVSAKPKDMTSSQWFKTQHV 43



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>RPP13_ARATH (Q9M667) Disease resistance protein RPP13 (Resistance to|
           Peronospora parasitica protein 13)
          Length = 835

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 8   STQKKVHVEYENFNKLQSTNILLKSLVAEVH 100
           S +++VHV + +  KL+S  +L  +   EVH
Sbjct: 687 SKERRVHVSWASLTKLESLRVLKLATPTEVH 717


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,249,095
Number of Sequences: 219361
Number of extensions: 845090
Number of successful extensions: 1672
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1672
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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