>emb|Z93015.9|HS169I5 Human DNA sequence from clone RP1-169I5 on chromosome Xp11 Contains the
             3' end of the DDX3 gene for DEAD/H (Asp-Glu-Ala-Asp/His)
             box polypeptide 3, the NYX gene for  nyctalopin, a gem
             (nuclear organelle) associated protein 7 (GEMIN7)
             pseudogene and two CpG islands, complete sequence
          Length = 133568

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 104   aaacgaacaaaccaaaaccaagcttggaa 132
             |||| |||||||||||| |||||||||||
Sbjct: 33834 aaacaaacaaaccaaaaacaagcttggaa 33806

>emb|AJ421478.1| Mus musculus X-inactivation center region; segment 1/3
          Length = 247850

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 104    aaacgaacaaaccaaaaccaa 124
              |||||||||||||||||||||
Sbjct: 197227 aaacgaacaaaccaaaaccaa 197247

>gb|AC004521.3| Arabidopsis thaliana chromosome 2 clone F4I1 map m336, complete sequence
          Length = 118327

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 87     caaacatgacaagccagaaac 107
              |||||||||||||||||||||
Sbjct: 104319 caaacatgacaagccagaaac 104299

>gb|AC099059.2| Homo sapiens chromosome 3 clone RP11-756A10, complete sequence
          Length = 158576

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 100    ccagaaacgaacaaaccaaaaccaa 124
              ||||||| |||||||||||||||||
Sbjct: 122556 ccagaaaagaacaaaccaaaaccaa 122580

>gb|AC022468.5|AC022468 Homo sapiens chromosome 15 clone RP11-546B15 map 15q15, complete sequence
          Length = 183539

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 104    aaacgaacaaaccaaaaccaa 124
              |||||||||||||||||||||
Sbjct: 124298 aaacgaacaaaccaaaaccaa 124278

>emb|AL683845.15| Mouse DNA sequence from clone RP23-423B1 on chromosome X, complete
              sequence
          Length = 134201

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 104    aaacgaacaaaccaaaaccaa 124
              |||||||||||||||||||||
Sbjct: 106336 aaacgaacaaaccaaaaccaa 106316

>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   caaaccaaaaccaagcttgg 130
             ||||||||||||||||||||
Sbjct: 32275 caaaccaaaaccaagcttgg 32256

>ref|NM_199407.1| Rattus norvegicus unc-5 homolog C (C. elegans) (Unc5c), mRNA
          Length = 9328

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 102  agaaacgaacaaaccaaaaccaag 125
            |||||| |||||||||||||||||
Sbjct: 4652 agaaacaaacaaaccaaaaccaag 4629

>gb|AC134859.4| Mus musculus BAC clone RP23-363G20 from chromosome 9, complete sequence
          Length = 182883

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 153    taaaagccaattaagtgtacatga 176
              ||||||||||| ||||||||||||
Sbjct: 127420 taaaagccaataaagtgtacatga 127397

>gb|AC137901.7| Mus musculus chromosome 6, clone RP23-81E17, complete sequence
          Length = 158419

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   cactccttttgccttagtct 227
             ||||||||||||||||||||
Sbjct: 56614 cactccttttgccttagtct 56633

>gb|AC144822.2| Danio rerio clone CH211-13O4, complete sequence
          Length = 164460

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   acatgacctggatgtttcag 190
             ||||||||||||||||||||
Sbjct: 79875 acatgacctggatgtttcag 79894

>gb|BC041310.1| Xenopus laevis NADH dehydrogenase (ubiquinone) 1 beta subcomplex,
           5, 16kDa, mRNA (cDNA clone MGC:53621 IMAGE:4724728),
           complete cds
          Length = 693

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 374 catccagcaaacaacccgcg 393
           ||||||||||||||||||||
Sbjct: 118 catccagcaaacaacccgcg 99

>gb|AC164563.4| Mus musculus BAC clone RP23-130D15 from chromosome 6, complete sequence
          Length = 202948

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   cactccttttgccttagtct 227
             ||||||||||||||||||||
Sbjct: 69814 cactccttttgccttagtct 69795

>emb|AL138712.19| Human DNA sequence from clone RP11-502P18 on chromosome 13 Contains 3'
              end of novel gene similar to Drosophila CG11486,  and the
              3' end of the FLT1 gene for fms-related tyrosine kinase 1
              (vascular endothelial growth factor/vascular permeability
              factor receptor), complete sequence
          Length = 164519

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    tgccttagtctaacatagct 236
              ||||||||||||||||||||
Sbjct: 111815 tgccttagtctaacatagct 111834

>emb|BX571665.6| Zebrafish DNA sequence from clone CH211-276E8 in linkage group 20
             Contains the 5' end of the gene for a novel protein
             similar to vertebrate ring finger protein 144 (RNF144),
             the gene for a novel radical SAM superfamily protein, the
             gene for a novel protein similar to mouse thymidylate
             kinase family LPS-inducible member (Tyki) and a CpG
             island, complete sequence
          Length = 166885

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    caaacatgacaagccagaaa 106
             ||||||||||||||||||||
Sbjct: 65190 caaacatgacaagccagaaa 65171

>gb|AC117530.2| Homo sapiens chromosome 5 clone RP11-294P1, complete sequence
          Length = 172442

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 146   caccatataaaagccaattaagtg 169
             ||||||||||||| ||||||||||
Sbjct: 55425 caccatataaaagtcaattaagtg 55402

>dbj|AB118026.1| Rattus norvegicus Unc5h3 mRNA, complete cds
          Length = 9328

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 102  agaaacgaacaaaccaaaaccaag 125
            |||||| |||||||||||||||||
Sbjct: 4652 agaaacaaacaaaccaaaaccaag 4629

>gb|AC010411.7| Homo sapiens chromosome 5 clone CTD-2165P17, complete sequence
          Length = 177807

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 146   caccatataaaagccaattaagtg 169
             ||||||||||||| ||||||||||
Sbjct: 48565 caccatataaaagtcaattaagtg 48588

>gb|AC008856.6|AC008856 Homo sapiens chromosome 5 clone CTD-2178N20, complete sequence
          Length = 154229

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 146   caccatataaaagccaattaagtg 169
             ||||||||||||| ||||||||||
Sbjct: 66119 caccatataaaagtcaattaagtg 66142

>gb|AC008166.2| Homo sapiens BAC clone RP11-155J2 from 2, complete sequence
          Length = 176991

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   gaacaaaccaaaaccaagct 127
             ||||||||||||||||||||
Sbjct: 46989 gaacaaaccaaaaccaagct 46970

>gb|AC175394.3| Gallus gallus BAC clone TAM31-49F22 from chromosome w, complete
             sequence
          Length = 123919

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   tgcatgatagggcaaccttt 324
             ||||||||||||||||||||
Sbjct: 21645 tgcatgatagggcaaccttt 21664

>emb|BX005454.5| Zebrafish DNA sequence from clone CH211-177N13 in linkage group 14,
             complete sequence
          Length = 63109

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   catataaaagccaattaagt 168
             ||||||||||||||||||||
Sbjct: 40187 catataaaagccaattaagt 40206

>gb|AF088189.1|AF088189 Mus musculus CD4 antigen (Cd4) gene, partial sequence
          Length = 23108

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 208  cactccttttgccttagtct 227
            ||||||||||||||||||||
Sbjct: 9229 cactccttttgccttagtct 9248

>gb|AC169087.3| Gallus gallus BAC clone CH261-119D18 from chromosome ul, complete
             sequence
          Length = 225652

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   ggatatggcattgctggtat 352
             ||||||||||||||||||||
Sbjct: 42820 ggatatggcattgctggtat 42839

>gb|AC126806.3| Mus musculus BAC clone RP23-158J3 from chromosome 9, complete
            sequence
          Length = 202590

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 153  taaaagccaattaagtgtacatga 176
            ||||||||||| ||||||||||||
Sbjct: 8240 taaaagccaataaagtgtacatga 8217

>gb|AC002397.1|AC002397 Mouse chromosome 6 BAC-284H12 (Research Genetics mouse BAC library)
            complete sequence
          Length = 227538

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 208  cactccttttgccttagtct 227
            ||||||||||||||||||||
Sbjct: 3318 cactccttttgccttagtct 3337

>gb|AC142254.4| Mus musculus BAC clone RP24-545G7 from 6, complete sequence
          Length = 159818

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   cactccttttgccttagtct 227
             ||||||||||||||||||||
Sbjct: 40493 cactccttttgccttagtct 40512

>emb|AL845513.9| Zebrafish DNA sequence from clone CH211-13O4 in linkage group 16,
             complete sequence
          Length = 164117

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   acatgacctggatgtttcag 190
             ||||||||||||||||||||
Sbjct: 84565 acatgacctggatgtttcag 84546


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,308,297
Number of Sequences: 3902068
Number of extensions: 4308297
Number of successful extensions: 90649
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90568
Number of HSP's gapped (non-prelim): 81
length of query: 483
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 461
effective length of database: 17,147,199,772
effective search space: 7904859094892
effective search space used: 7904859094892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)