ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome ... 44 0.32
2gb|AC159278.3| Mus musculus BAC clone RP23-361M12 from chromosom... 44 0.32
3emb|AL928554.24| Mouse DNA sequence from clone RP23-131H7 on chr... 44 0.32
4emb|CR932964.2| Medicago truncatula chromosome 5 clone mte1-60l1... 42 1.3
5emb|CR931729.2| Medicago truncatula chromosome 5 clone mte1-82a1... 42 1.3
6gb|BT015285.1| Drosophila melanogaster GH17517 full insert cDNA 40 4.9
7emb|CT010454.8| Mouse DNA sequence from clone RP23-348C22 on chr... 40 4.9
8ref|XM_758757.1| Theileria parva strain Muguga chromosome 4 hypo... 40 4.9
9emb|AL022139.1|DMC65F1 Drosophila melanogaster cosmid clone 65F1 40 4.9
10gb|AC105774.8| Drosophila melanogaster X BAC RP98-8O5 (Roswell P... 40 4.9
11gb|AC104602.3| Drosophila melanogaster X BAC RP98-16G6 (Roswell ... 40 4.9
12gb|AC092588.2| Homo sapiens BAC clone RP11-44A12 from 2, complet... 40 4.9
13ref|XM_687723.1| PREDICTED: Danio rerio Datf1_predicted protein ... 40 4.9
14dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 40 4.9
15emb|BX296530.7| Zebrafish DNA sequence from clone DKEY-22H2 in l... 40 4.9
16gb|AC154613.3| Mus musculus BAC clone RP23-338M12 from chromosom... 40 4.9
17emb|AL935195.14| Zebrafish DNA sequence from clone CH211-277C7 i... 40 4.9
18gb|AE003418.4| Drosophila melanogaster chromosome X, section 2 o... 40 4.9 
>gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome 1, complete sequence
          Length = 169832

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 126  tagtcatcactggtactcatgt 147
            ||||||||||||||||||||||
Sbjct: 8999 tagtcatcactggtactcatgt 8978
to top
>gb|AC159278.3| Mus musculus BAC clone RP23-361M12 from chromosome 1, complete sequence
          Length = 180181

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 126   tagtcatcactggtactcatgt 147
             ||||||||||||||||||||||
Sbjct: 50072 tagtcatcactggtactcatgt 50093
to top
>emb|AL928554.24| Mouse DNA sequence from clone RP23-131H7 on chromosome 1, complete
              sequence
          Length = 195568

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 126    tagtcatcactggtactcatgt 147
              ||||||||||||||||||||||
Sbjct: 143718 tagtcatcactggtactcatgt 143697
to top
>emb|CR932964.2| Medicago truncatula chromosome 5 clone mte1-60l18, COMPLETE SEQUENCE
          Length = 93777

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 217  tggacaaatgacaatggaatc 237
            |||||||||||||||||||||
Sbjct: 2647 tggacaaatgacaatggaatc 2627
to top
>emb|CR931729.2| Medicago truncatula chromosome 5 clone mte1-82a1, COMPLETE SEQUENCE
          Length = 94751

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 217 tggacaaatgacaatggaatc 237
           |||||||||||||||||||||
Sbjct: 856 tggacaaatgacaatggaatc 876
to top
>gb|BT015285.1| Drosophila melanogaster GH17517 full insert cDNA
          Length = 8498

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 gacaaatgacaatggaatcg 238
           ||||||||||||||||||||
Sbjct: 605 gacaaatgacaatggaatcg 586
to top
>emb|CT010454.8| Mouse DNA sequence from clone RP23-348C22 on chromosome 13, complete
              sequence
          Length = 221281

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 252    ggagtgtacatggaggaatc 271
              ||||||||||||||||||||
Sbjct: 205205 ggagtgtacatggaggaatc 205186
to top
>ref|XM_758757.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
           (TP04_0215) partial mRNA
          Length = 846

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 tattcaccattctatctacc 301
           ||||||||||||||||||||
Sbjct: 658 tattcaccattctatctacc 677
to top
>emb|AL022139.1|DMC65F1 Drosophila melanogaster cosmid clone 65F1
          Length = 33000

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   gacaaatgacaatggaatcg 238
             ||||||||||||||||||||
Sbjct: 23236 gacaaatgacaatggaatcg 23217
to top
>gb|AC105774.8| Drosophila melanogaster X BAC RP98-8O5 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 170186

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    gacaaatgacaatggaatcg 238
              ||||||||||||||||||||
Sbjct: 134346 gacaaatgacaatggaatcg 134327
to top
>gb|AC104602.3| Drosophila melanogaster X BAC RP98-16G6 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 161668

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   gacaaatgacaatggaatcg 238
             ||||||||||||||||||||
Sbjct: 20781 gacaaatgacaatggaatcg 20762
to top
>gb|AC092588.2| Homo sapiens BAC clone RP11-44A12 from 2, complete sequence
          Length = 140401

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   acaagaggacgaacattaaa 198
             ||||||||||||||||||||
Sbjct: 20416 acaagaggacgaacattaaa 20435
to top
>ref|XM_687723.1| PREDICTED: Danio rerio Datf1_predicted protein (Datf1_predicted),
            mRNA
          Length = 8921

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 31   tcatttccacagtacactga 50
            ||||||||||||||||||||
Sbjct: 1594 tcatttccacagtacactga 1575
to top
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA,
              complete genome
          Length = 2516575

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    ttggactctttacaacaaga 184
              ||||||||||||||||||||
Sbjct: 679102 ttggactctttacaacaaga 679121
to top
>emb|BX296530.7| Zebrafish DNA sequence from clone DKEY-22H2 in linkage group 11,
             complete sequence
          Length = 153078

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    tcatttccacagtacactga 50
             ||||||||||||||||||||
Sbjct: 10598 tcatttccacagtacactga 10617
to top
>gb|AC154613.3| Mus musculus BAC clone RP23-338M12 from chromosome 13, complete sequence
          Length = 200093

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    ggagtgtacatggaggaatc 271
              ||||||||||||||||||||
Sbjct: 169455 ggagtgtacatggaggaatc 169474
to top
>emb|AL935195.14| Zebrafish DNA sequence from clone CH211-277C7 in linkage group 14,
             complete sequence
          Length = 194053

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 39    acagtacactgaagaaaaactgtt 62
             |||||||||||||||| |||||||
Sbjct: 39594 acagtacactgaagaacaactgtt 39571
to top
>gb|AE003418.4| Drosophila melanogaster chromosome X, section 2 of 74 of the complete
            sequence
          Length = 315092

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 219  gacaaatgacaatggaatcg 238
            ||||||||||||||||||||
Sbjct: 4149 gacaaatgacaatggaatcg 4130


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,912,722
Number of Sequences: 3902068
Number of extensions: 2912722
Number of successful extensions: 49220
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49187
Number of HSP's gapped (non-prelim): 33
length of query: 371
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 349
effective length of database: 17,147,199,772
effective search space: 5984372720428
effective search space used: 5984372720428
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top