ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CYPC_BACSU (O31440) Cytochrome P450 152A1 (EC 1.14.-.-) (P450BsB... 30 1.9
2CYNT_SYNP7 (P27134) Carbonic anhydrase (EC 4.2.1.1) 29 4.3
3S230_PLAFO (P68875) Transmission-blocking target antigen S230 pr... 28 7.4
4S230_PLAF7 (P68874) Transmission-blocking target antigen S230 pr... 28 7.4
5DNS2B_MOUSE (Q9QY48) Deoxyribonuclease-2-beta precursor (EC 3.1.... 28 9.7
6YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in c... 28 9.7

>CYPC_BACSU (O31440) Cytochrome P450 152A1 (EC 1.14.-.-) (P450BsBeta) (Fatty|
           acid beta-hydroxylase)
          Length = 417

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +1

Query: 139 LTAQVPHAVSSQESNFTLK---CYINNRTLALNKRKITMSTRAQNFICITTLEAS 294
           +  Q+PH  S   S   LK    +I NRT   N          +NFIC+T  EA+
Sbjct: 1   MNEQIPHDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAA 55



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>CYNT_SYNP7 (P27134) Carbonic anhydrase (EC 4.2.1.1)|
          Length = 272

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
 Frame = -3

Query: 305 VEVIEASNVVMQMKFWALVDIVIFLLFSARVLLFM*HFKVKFD--------SWDDTA*GT 150
           VE++ A NV+ Q++      IV   LF  ++ +F   ++V+          S DDT    
Sbjct: 147 VEILVAENVLTQIENLKTYPIVRSRLFQGKLQIFGWIYEVESGEVLQISRTSSDDTGIDE 206

Query: 149 CAVRNPGHDIKELADHSWHPYT 84
           C VR PG   K +      P T
Sbjct: 207 CPVRLPGSQEKAILGRCVVPLT 228



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>S230_PLAFO (P68875) Transmission-blocking target antigen S230 precursor|
          Length = 3135

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 139  LTAQVPHAVSSQESNFTLKCYINNRTLALNKRKITMSTRAQNFI 270
            +T + PH       NFT K Y  N +L  N +KI ++   +NF+
Sbjct: 2486 VTIKCPHT-----KNFTPKDYFPNSSLITNDKKIVITFDKKNFV 2524



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>S230_PLAF7 (P68874) Transmission-blocking target antigen S230 precursor|
          Length = 3135

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 139  LTAQVPHAVSSQESNFTLKCYINNRTLALNKRKITMSTRAQNFI 270
            +T + PH       NFT K Y  N +L  N +KI ++   +NF+
Sbjct: 2486 VTIKCPHT-----KNFTPKDYFPNSSLITNDKKIVITFDKKNFV 2524



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>DNS2B_MOUSE (Q9QY48) Deoxyribonuclease-2-beta precursor (EC 3.1.22.1)|
           (Deoxyribonuclease II beta) (DNase II beta) (DNase2-like
           acid DNase) (DNase II-like acid DNase) (Endonuclease
           DLAD)
          Length = 354

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +3

Query: 276 HNIRGLNYLHLSLNSFFSDQI 338
           H+ +GLN++H + +SF++D I
Sbjct: 223 HSAQGLNFVHFAKSSFYTDDI 243



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>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III|
          Length = 654

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 11  YENFNKLQSTNILLKSLVAEVHFITYKDATSDLPVL*C 124
           +  F K++   IL K  +A VHF+  +DA   +  L C
Sbjct: 319 FGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLSC 356


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,136,703
Number of Sequences: 219361
Number of extensions: 1002947
Number of successful extensions: 1924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1924
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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