>R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7073

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 119  FVCVEQSWYIRKIFW*GHVYMVIAETDCFI--CCSCYWGV 6
            FVCVE   Y   +F  G+    I    CF+  CC CY+G+
Sbjct: 3737 FVCVE---YYPLLFITGNTLQCIMLVYCFLGYCCCCYFGL 3773

>R1AB_BSCR3 (Q3I5J6) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7071

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 119  FVCVEQSWYIRKIFW*GHVYMVIAETDCFI--CCSCYWGV 6
            FVCVE   Y   +F  G+    I    CF+  CC CY+G+
Sbjct: 3735 FVCVE---YYPLLFITGNTLQCIMLVYCFLGYCCCCYFGL 3771

>VGLL4_MOUSE (Q80V24) Transcription cofactor vestigial-like protein 4 (Vgl-4)|
          Length = 287

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 21/65 (32%), Positives = 27/65 (41%)
 Frame = +3

Query: 3   SNAPITGAANKAISLSYNHVYMPLPKYFSYVPALLYTNKATSILVGSITLRTMKSACLLR 182
           S +PI  AA  A+SL   H+Y  LP       AL    K +S    S   R      ++ 
Sbjct: 107 SRSPIERAAAPAVSLHGGHLYASLPSLMEQPLAL---TKNSSDTGRSAVERQQNRPSVIT 163

Query: 183 CQGAG 197
           C  AG
Sbjct: 164 CASAG 168


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,436,778
Number of Sequences: 219361
Number of extensions: 1158234
Number of successful extensions: 2638
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2638
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)