ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 pr... 68 8e-12
2SYFB_BORPE (Q7VVR5) Phenylalanyl-tRNA synthetase beta chain (EC ... 30 3.0
3SYFB_BORPA (Q7W7C6) Phenylalanyl-tRNA synthetase beta chain (EC ... 30 3.0
4SYFB_BORBR (Q7WKR4) Phenylalanyl-tRNA synthetase beta chain (EC ... 30 3.0
5UPPS_SULTO (Q976K2) Undecaprenyl pyrophosphate synthetase (EC 2.... 29 5.2
6SYI_HAEDU (Q7VP34) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 28 6.7
7SYL_MYCTU (P67510) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 28 6.7
8SYL_MYCBO (P67511) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 28 6.7
9RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1... 28 6.7

>CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 precursor (EC|
           2.7.11.1)
          Length = 901

 Score = 68.2 bits (165), Expect = 8e-12
 Identities = 32/33 (96%), Positives = 32/33 (96%)
 Frame = -2

Query: 418 RNVGSSIGDGLRSLEEEIGPASPQENLYLQHNF 320
           RNVGSSIGDGLRSLEEEI PASPQENLYLQHNF
Sbjct: 869 RNVGSSIGDGLRSLEEEIAPASPQENLYLQHNF 901



to top

>SYFB_BORPE (Q7VVR5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 805

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 319 RSCAASTGSPVETPAQSLPPVTADHLL 399
           R  AA TG+P+  PA    PVT DH L
Sbjct: 177 REVAALTGTPLTAPAAEPVPVTIDHRL 203



to top

>SYFB_BORPA (Q7W7C6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 805

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 319 RSCAASTGSPVETPAQSLPPVTADHLL 399
           R  AA TG+P+  PA    PVT DH L
Sbjct: 177 REVAALTGTPLTAPAAEPVPVTIDHRL 203



to top

>SYFB_BORBR (Q7WKR4) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 805

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 319 RSCAASTGSPVETPAQSLPPVTADHLL 399
           R  AA TG+P+  PA    PVT DH L
Sbjct: 177 REVAALTGTPLTAPAAEPVPVTIDHRL 203



to top

>UPPS_SULTO (Q976K2) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 262

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 306 RSAENMETVCRF--KFRLCDLLLWPFRREDLAI*STYWKDF*HLEAFLCRLIRS 151
           +  E+++ V R   + R+ + LLW     +L    TYW DF  ++  L R IRS
Sbjct: 201 KELEDIDLVIRSSGEIRISNFLLWHIAYSELFFVDTYWPDFRKID--LWRAIRS 252



to top

>SYI_HAEDU (Q7VP34) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 935

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 5   NTVDENIMLICRETNNRKTTTHLHVSASYRTGLINCGHSTYK 130
           N  D+N+    R+T+  K T  LH    Y  G ++ GH+  K
Sbjct: 31  NWYDKNLYQQIRQTSKGKKTFILHDGPPYANGNLHLGHAVNK 72



to top

>SYL_MYCTU (P67510) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 969

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 377 GGRDWAGVSTGE--PVLAAQLLMKCQDQLKTWKP--SAVLSSDFVT 252
           GGRDWA ++ GE   V+    L+   D L  W P    VL+++ VT
Sbjct: 211 GGRDWAKLTAGERADVIDEYRLVYRADSLVNWCPGLGTVLANEEVT 256



to top

>SYL_MYCBO (P67511) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 969

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 377 GGRDWAGVSTGE--PVLAAQLLMKCQDQLKTWKP--SAVLSSDFVT 252
           GGRDWA ++ GE   V+    L+   D L  W P    VL+++ VT
Sbjct: 211 GGRDWAKLTAGERADVIDEYRLVYRADSLVNWCPGLGTVLANEEVT 256



to top

>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)|
           (Helicase-like protein NHL)
          Length = 1400

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -3

Query: 186 HLEAFLCRLIRSSYNCHLYL*VE----WPQLMSPVL*LADTCK 70
           HL+  LCR   +S +CH Y  VE      +L SP+L + D  K
Sbjct: 157 HLQIHLCRKKVASRSCHFYNNVEEKSLEQELASPILDIEDLVK 199


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,045,328
Number of Sequences: 219361
Number of extensions: 1235072
Number of successful extensions: 3413
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3413
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top