>VCAP_HHV6U (P17887) Major capsid protein (MCP)|
          Length = 1345

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = -3

Query: 294 KNHLTQVL----LL*AAIKMSL*PASFSPSRLTCLIQSRETRCQRYKTVTRIPTIELPS 130
           KN  T+VL    ++   I + L P SF  +R   +++  +T CQ+Y    +I T  L S
Sbjct: 544 KNRATEVLCTPRIMIGNIPLPLAPVSFHEARTNQILEHAKTNCQKYDFTLKIVTESLTS 602

>PROB_SYNP6 (Q5N0T0) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)|
           (GK)
          Length = 370

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 104 KKQGYTFILEGSSIVGIRVTVLYLWHRVSRLCIRQ 208
           ++QGY  +L  S  VG+  T L L  R SR+  RQ
Sbjct: 41  RRQGYNVVLVSSGAVGVGCTRLGLRDRPSRIAQRQ 75

>SMC2_CHICK (Q90988) Structural maintenance of chromosome 2 (Chromosome|
           scaffold protein ScII)
          Length = 1189

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +1

Query: 85  LIKMGKKKARVYVYP*RKLNSRNPGHRLVSLASSL 189
           +++ G+ K R  + P  K+++ + GH ++SLA +L
Sbjct: 563 ILEKGQLKHRYTIIPLSKISANSIGHEIISLAKNL 597

>DRTS_MIMIV (Q5UQG3) Bifunctional dihydrofolate reductase-thymidylate synthase|
           (DHFR-TS) [Includes: Dihydrofolate reductase (EC
           1.5.1.3); Thymidylate synthase (EC 2.1.1.45)]
          Length = 563

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 127 DKRIPL-LFFCPSLSAYPLALSHFCYILHVSVY 32
           D+RI + L+ C  L    LA  HFCY+  V +Y
Sbjct: 414 DRRIMINLWNCSDLDKMALAPCHFCYMFGVDLY 446

>SMG1_MOUSE (Q8BKX6) Serine/threonine-protein kinase SMG1 (EC 2.7.11.1) (SMG-1)|
          Length = 3658

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
 Frame = +1

Query: 172  SLASSLPTLYQTSQP*WAE*SGLKRHLYSCSEQQHLG-------QMVFHLRLPDCGMVG 327
            ++A S+ TL +  Q  W E SG  R +Y   +QQ+L         ++  + LP    VG
Sbjct: 1518 AVAKSILTLAKWVQAEWKEISGQLRQVYRAQQQQNLSGLSTLSRNILALIELPSANTVG 1576

>SYLM_NEUCR (P15181) Leucyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.4) (Leucine--tRNA ligase) (LeuRS)
          Length = 994

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -2

Query: 349 QNTSAAVNLPFRNLATSGEKPSDPGVAALSSYKDVSLTRFIQPIKADLSD 200
           ++ S+ V  PF+ L T G       +    +Y D +  RF++P + DLSD
Sbjct: 636 ESASSEVYEPFKRLITQG-------MVHGKTYTDPATGRFLKPDEVDLSD 678

>DNAE2_RHOBA (Q7UXK9) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1145

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
 Frame = -2

Query: 328  NLPFRNL--ATSGEKPSDPGVAALSSYKDVSLTRFIQPIKA----DLSDTESGDSMPEIQ 167
            N PF NL   T+  K S   +A L+     +L    Q  +A     L+  +SGDSMP + 
Sbjct: 934  NGPFANLHDLTTRAKLSRSNIATLADAD--ALASIAQDRRAAVWQSLAQDDSGDSMPLLA 991

Query: 166  DGDPD 152
            D +PD
Sbjct: 992  DLEPD 996

>CTR2_VESOR (P00768) Chymotrypsin-2 (EC 3.4.21.1) (Chymotrypsin II)|
          Length = 216

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -2

Query: 286 SDPGVAALSSYKDVSLTRFIQPIKADLSDTESGDSMPEIQDGDP 155
           +D G+  +S  KD+S T+ +QP+K  +S+T        I+ GDP
Sbjct: 81  NDIGLIRVS--KDISFTQLVQPVKLPVSNT--------IKAGDP 114

>CTR2_VESCR (P00769) Chymotrypsin-2 (EC 3.4.21.1) (Chymotrypsin II)|
          Length = 218

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -2

Query: 286 SDPGVAALSSYKDVSLTRFIQPIKADLSDTESGDSMPEIQDGDP 155
           +D G+  +S  KD+S T+ +QP+K  +S+T        I+ GDP
Sbjct: 83  NDIGLIRVS--KDISYTQLVQPVKLPVSNT--------IKAGDP 116

>MGR7_RAT (P35400) Metabotropic glutamate receptor 7 precursor (mGluR7)|
          Length = 915

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 28  LDKLRHVVYSKNGSMPRDMLIKMGKKKARVYVYP*RKLNSRNPGHRLV 171
           L  +RHV ++ +   P  M  K G    R  ++  +  N+ NPG+RL+
Sbjct: 449 LKYIRHVNFNGSAGTPV-MFNKNGDAPGRYDIFQYQTTNTTNPGYRLI 495

>CNC_DROME (P20482) Segmentation protein cap'n'collar|
          Length = 1383

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 340 SAAVNLPFRNLATSGEKPSDPGVAALSSYKDVSLTRFIQPIKADLSDTESGDSMPEI-QD 164
           SAA N+  ++      K SDP ++  S +KD  +    +   A + D E   ++ E+ QD
Sbjct: 377 SAATNV--KSKPEDETKSSDPSISESSGFKDTDVNAENEASAASVDDIEKLKALEELQQD 434

Query: 163 GDPDSD 146
            D +++
Sbjct: 435 KDKNNE 440


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,148,442
Number of Sequences: 219361
Number of extensions: 1011680
Number of successful extensions: 2680
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2678
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)