ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl19f05 |
|---|---|
| Clone Library Name | barley_pub |
>HIS52_METMP (P61783) Imidazole glycerol phosphate synthase subunit hisH2 (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH2) (ImGP synthase subunit hisH2) (IGPS subunit hisH2) Length = 202 Score = 32.7 bits (73), Expect = 0.34 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = +2 Query: 35 KKVPLHRVNLFVKCRGVHMVLAPTMQNRKLGLSLFRSKATKKKIANRFR 181 KKV + L C G+H++ + + R GL +K K K++N+F+ Sbjct: 67 KKVVQEKTPLLGICLGMHLLTNSSEEGRLKGLGFINAKTVKFKLSNKFK 115
>NAC1_BOVIN (P48765) Sodium/calcium exchanger 1 precursor| (Na(+)/Ca(2+)-exchange protein 1) Length = 970 Score = 30.8 bits (68), Expect = 1.3 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = +1 Query: 115 QKTRFEFIQIKSYQEKNSKQIQIRKLNLSFLTGSEPWR 228 + TR E I +SY+ K++ I+K NL+ + G+ WR Sbjct: 705 EHTRLEVIIEESYEFKSTVDKLIKKTNLALVVGTNSWR 742
>NAC1_RAT (Q01728) Sodium/calcium exchanger 1 precursor| (Na(+)/Ca(2+)-exchange protein 1) Length = 971 Score = 29.6 bits (65), Expect = 2.9 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +1 Query: 115 QKTRFEFIQIKSYQEKNSKQIQIRKLNLSFLTGSEPWR 228 + T+ E I +SY+ K++ I+K NL+ + G+ WR Sbjct: 706 EHTKLEVIIEESYEFKSTVDKLIKKTNLALVVGTNSWR 743
>NAC1_HUMAN (P32418) Sodium/calcium exchanger 1 precursor| (Na(+)/Ca(2+)-exchange protein 1) Length = 973 Score = 29.6 bits (65), Expect = 2.9 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +1 Query: 115 QKTRFEFIQIKSYQEKNSKQIQIRKLNLSFLTGSEPWR 228 + T+ E I +SY+ K++ I+K NL+ + G+ WR Sbjct: 708 EHTKLEVIIEESYEFKSTVDKLIKKTNLALVVGTNSWR 745
>NAC1_MOUSE (P70414) Sodium/calcium exchanger 1 precursor| (Na(+)/Ca(2+)-exchange protein 1) Length = 970 Score = 29.6 bits (65), Expect = 2.9 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +1 Query: 115 QKTRFEFIQIKSYQEKNSKQIQIRKLNLSFLTGSEPWR 228 + T+ E I +SY+ K++ I+K NL+ + G+ WR Sbjct: 705 EHTKLEVIIQESYEFKSTVDKLIKKTNLALVVGTNSWR 742
>NAC1_FELCA (P48767) Sodium/calcium exchanger 1 precursor| (Na(+)/Ca(2+)-exchange protein 1) Length = 970 Score = 29.6 bits (65), Expect = 2.9 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +1 Query: 115 QKTRFEFIQIKSYQEKNSKQIQIRKLNLSFLTGSEPWR 228 + T+ E I +SY+ K++ I+K NL+ + G+ WR Sbjct: 705 EHTKLEVIIEESYEFKSTVDKLIKKTNLALVVGTNSWR 742
>NAC1_CAVPO (P48766) Sodium/calcium exchanger 1 precursor| (Na(+)/Ca(2+)-exchange protein 1) Length = 970 Score = 29.6 bits (65), Expect = 2.9 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +1 Query: 115 QKTRFEFIQIKSYQEKNSKQIQIRKLNLSFLTGSEPWR 228 + T+ E I +SY+ K++ I+K NL+ + G+ WR Sbjct: 705 EHTKLEVIIEESYEFKSTVDKLIKKTNLALVVGTNSWR 742
>NAC1_CANFA (P23685) Sodium/calcium exchanger 1 precursor| (Na(+)/Ca(2+)-exchange protein 1) Length = 970 Score = 29.6 bits (65), Expect = 2.9 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +1 Query: 115 QKTRFEFIQIKSYQEKNSKQIQIRKLNLSFLTGSEPWR 228 + T+ E I +SY+ K++ I+K NL+ + G+ WR Sbjct: 705 EHTKLEVIIEESYEFKSTVDKLIKKTNLALVVGTNSWR 742
>NAC2_RAT (P48768) Sodium/calcium exchanger 2 precursor| (Na(+)/Ca(2+)-exchange protein 2) Length = 921 Score = 29.6 bits (65), Expect = 2.9 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +1 Query: 115 QKTRFEFIQIKSYQEKNSKQIQIRKLNLSFLTGSEPWR 228 + R E I +SY KN+ I+K NL+ + G+ WR Sbjct: 655 ENCRLEVIIEESYDFKNTVDKLIKKTNLALVIGTHSWR 692
>NAC2_HUMAN (Q9UPR5) Sodium/calcium exchanger 2 precursor| (Na(+)/Ca(2+)-exchange protein 2) Length = 921 Score = 29.6 bits (65), Expect = 2.9 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +1 Query: 115 QKTRFEFIQIKSYQEKNSKQIQIRKLNLSFLTGSEPWR 228 + R E I +SY KN+ I+K NL+ + G+ WR Sbjct: 655 ENCRLEVIIEESYDFKNTVDKLIKKTNLALVIGTHSWR 692
>SULU_CAEEL (P46549) Serine/threonine-protein kinase SULU (EC 2.7.11.1)| (Protein kinase 18) Length = 982 Score = 29.3 bits (64), Expect = 3.7 Identities = 18/70 (25%), Positives = 33/70 (47%) Frame = +1 Query: 148 SYQEKNSKQIQIRKLNLSFLTGSEPWRISNLWKKTSASKLLFPNGVLQNLMCSDMSTVCM 327 +Y +KN + + I+K+N S E W +++ K+ S + ++ C T C Sbjct: 47 AYDKKNEQTVAIKKMNFSGKQAVEKW--NDILKEVSFLNTVVHPHIVDYKACFLKDTTCW 104 Query: 328 LLLISTCSGS 357 L++ C GS Sbjct: 105 LVM-EYCIGS 113
>PGK1_RHINI (P29405) Phosphoglycerate kinase 1 (EC 2.7.2.3)| Length = 417 Score = 28.5 bits (62), Expect = 6.4 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +2 Query: 47 LHRVNLFVKCRGVHMVLAPTMQNRKLGLSLFRSKATK 157 L +VN + C G+ T+ N K+G SLF +K Sbjct: 226 LDKVNALIICGGMAFTFKKTLDNVKIGKSLFDEPGSK 262
>POL_VILVK (P35956) Pol polyprotein [Contains: Protease (EC 3.4.23.-)| (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) (dUTPase); Integrase (IN)] Length = 1101 Score = 28.5 bits (62), Expect = 6.4 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = +2 Query: 35 KKVPLHRVNLFVKCRGVHMVLAPTMQNRKLGLSLFRSKATKKKIANRFRSENSI 196 KK+P RV L C+G H+ P Q + GL K+I +R E + Sbjct: 141 KKIPSTRVRLKEGCKGPHIAQWPLTQEKLEGL---------KEIVDRLEKEGKV 185
>PGK_NEUCR (P38667) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 418 Score = 28.5 bits (62), Expect = 6.4 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +2 Query: 47 LHRVNLFVKCRGVHMVLAPTMQNRKLGLSLFRSKATK 157 L +VN + C G+ T+QN +G SLF K Sbjct: 228 LDKVNTLIVCGGMAFTFKKTLQNMPIGNSLFDEAGAK 264
>SYPC_CANAL (P78600) Prolyl-tRNA synthetase, cytoplasmic (EC 6.1.1.15)| (Proline--tRNA ligase) (ProRS) Length = 575 Score = 28.5 bits (62), Expect = 6.4 Identities = 10/33 (30%), Positives = 21/33 (63%) Frame = +1 Query: 172 QIQIRKLNLSFLTGSEPWRISNLWKKTSASKLL 270 +IQ +++LS ++ E W+++N W + KL+ Sbjct: 73 EIQFEEVSLSLISHKELWKLTNRWDQEEIFKLV 105
>POL_VILV2 (P23427) Pol polyprotein [Contains: Protease (Retropepsin) (EC| 3.4.23.-); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) (dUTPase); Integrase (IN)] Length = 1105 Score = 28.5 bits (62), Expect = 6.4 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = +2 Query: 35 KKVPLHRVNLFVKCRGVHMVLAPTMQNRKLGLSLFRSKATKKKIANRFRSENSI 196 KK+P RV L C+G H+ P Q + GL K+I +R E + Sbjct: 145 KKIPSTRVRLKEGCKGPHIAQWPLTQEKLEGL---------KEIVDRLEKEGKV 189
>POL_VILV (P03370) Pol polyprotein [Contains: Protease (EC 3.4.23.-)| (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) (dUTPase); Integrase (IN)] Length = 1105 Score = 28.5 bits (62), Expect = 6.4 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = +2 Query: 35 KKVPLHRVNLFVKCRGVHMVLAPTMQNRKLGLSLFRSKATKKKIANRFRSENSI 196 KK+P RV L C+G H+ P Q + GL K+I +R E + Sbjct: 145 KKIPSTRVRLKEGCKGPHIAQWPLTQEKLEGL---------KEIVDRLEKEGKV 189
>POL_OMVVS (P16901) Pol polyprotein [Contains: Protease (EC 3.4.23.-)| (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) (dUTPase); Integrase (IN)] Length = 1086 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +2 Query: 35 KKVPLHRVNLFVKCRGVHMVLAPTMQNRKLGLSLFRSKATKK 160 KK+P+ +V L C+G H+ P Q + GL K K+ Sbjct: 126 KKIPITQVKLKEGCKGPHIAQWPLTQEKLEGLKEIVDKLEKE 167
>POL_VILV1 (P23426) Pol polyprotein [Contains: Protease (Retropepsin) (EC| 3.4.23.-); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) (dUTPase); Integrase (IN)] Length = 1105 Score = 28.1 bits (61), Expect = 8.3 Identities = 16/54 (29%), Positives = 24/54 (44%) Frame = +2 Query: 35 KKVPLHRVNLFVKCRGVHMVLAPTMQNRKLGLSLFRSKATKKKIANRFRSENSI 196 KK+P+ V L C+G H+ P Q + GL K+I +R E + Sbjct: 145 KKIPITEVRLKEGCKGPHIAQWPLTQEKLEGL---------KEIVDRLEKEGKV 189 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,754,420 Number of Sequences: 219361 Number of extensions: 1109996 Number of successful extensions: 2498 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2453 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2497 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
