ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl19f04 |
|---|---|
| Clone Library Name | barley_pub |
>STK6_RAT (P59241) Serine/threonine-protein kinase 6 (EC 2.7.11.1) (Aurora-A)| (ratAurA) Length = 397 Score = 32.3 bits (72), Expect = 0.44 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +3 Query: 315 PATTGRRPGSCCSRPTRSKNPRPGAAGH 398 PA +G RP S S P +S+ P+P A+G+ Sbjct: 74 PAASGPRPASRLSNPQKSEQPQPAASGN 101
>IF2_BRAJA (Q89WA9) Translation initiation factor IF-2| Length = 902 Score = 31.6 bits (70), Expect = 0.76 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +3 Query: 309 AEPATTGRRPGSCCSRPTRSKNPRPGA-AGHTPS 407 A P TT RPG+ +RP + RPGA AG P+ Sbjct: 201 ARPGTTTTRPGTTTARPATTTAQRPGAPAGRGPA 234
>Y2349_CORGL (Q8NN60) Hypothetical UPF0230 protein Cgl2349/cg2579| Length = 274 Score = 30.8 bits (68), Expect = 1.3 Identities = 20/53 (37%), Positives = 32/53 (60%) Frame = -3 Query: 372 SSTVSDVNSMNRVVDLSSQVQHVGAMESISVTMAEDGASHEPDHDLSDVSMSR 214 ++ V D +S+ RVVD SS VGA + MA+DGAS + +D++ ++ R Sbjct: 82 AAAVFDDDSV-RVVDTSSLGMAVGAAAMAAARMAKDGASLQECYDIAVDTLKR 133
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 30.0 bits (66), Expect = 2.2 Identities = 27/105 (25%), Positives = 36/105 (34%) Frame = +3 Query: 93 SGKLQQEKKKNPRLAHTPNGTLQIIRRVFTSPRL*SAERKPCSSTRRRGRGQARAKLXXX 272 SG + + P+ +H NG + RR S + RK T RGR + Sbjct: 496 SGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSP----- 550 Query: 273 XXXXXXXXXXXXAEPATTGRRPGSCCSRPTRSKNPRPGAAGHTPS 407 + P T RR S P R + P P TPS Sbjct: 551 ------------SPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPS 583
>GRP78_APLCA (Q16956) 78 kDa glucose-regulated protein precursor (GRP 78) (BiP)| (Protein 1603) Length = 667 Score = 29.6 bits (65), Expect = 2.9 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = +1 Query: 103 FNKKRKKIQGLLTP-LTVPYRSSGAFSPPLGFDQLRE 210 FN+K+ +++G++ P +T Y SG PP G ++ E Sbjct: 625 FNEKKTELEGIVQPIMTKLYEQSGGAPPPSGEEESEE 661
>KHDR3_MOUSE (Q9R226) KH domain-containing, RNA binding, signal| transduction-associated protein 3 (Sam68-like mammalian protein 2) (SLM-2) (RNA-binding protein Etoile) Length = 346 Score = 29.3 bits (64), Expect = 3.7 Identities = 20/68 (29%), Positives = 27/68 (39%) Frame = -2 Query: 394 PAAPGRGFFDRVGREQHEPGRRPVVAGSARRCHGEHQRDDGGGRSFARA*PRPLRRVDEQ 215 P + GRG R G RP + +GE+ DDG G ++ DEQ Sbjct: 234 PVSRGRGLLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAY-----------DEQ 282 Query: 214 GFLSADQS 191 + S D S Sbjct: 283 SYDSYDNS 290
>KHDR3_HUMAN (O75525) KH domain-containing, RNA binding, signal| transduction-associated protein 3 (Sam68-like mammalian protein 2) (SLM-2) (Sam68-like phosphotyrosine protein) (RNA-binding protein T-Star) Length = 346 Score = 29.3 bits (64), Expect = 3.7 Identities = 20/68 (29%), Positives = 27/68 (39%) Frame = -2 Query: 394 PAAPGRGFFDRVGREQHEPGRRPVVAGSARRCHGEHQRDDGGGRSFARA*PRPLRRVDEQ 215 P + GRG R G RP + +GE+ DDG G ++ DEQ Sbjct: 234 PVSRGRGLLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAY-----------DEQ 282 Query: 214 GFLSADQS 191 + S D S Sbjct: 283 SYDSYDNS 290
>DDLB_PSESM (Q87WY7) D-alanine--D-alanine ligase B (EC 6.3.2.4)| (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B) Length = 319 Score = 29.3 bits (64), Expect = 3.7 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +1 Query: 124 IQGLLTPLTVPYRSSGAFSPPLGFDQLR 207 +QGLL L +PY SG + L D+LR Sbjct: 88 MQGLLECLEIPYTGSGVLASALAMDKLR 115
>TMM24_HUMAN (O14523) Transmembrane protein 24 (Protein DLNB23)| Length = 706 Score = 28.9 bits (63), Expect = 4.9 Identities = 13/36 (36%), Positives = 23/36 (63%) Frame = -3 Query: 387 LQDADSSTVSDVNSMNRVVDLSSQVQHVGAMESISV 280 +Q+AD +T SD++ V D+ S+ GA+E+ S+ Sbjct: 597 VQEADETTRSDISERPSVDDIESETGSTGALETRSL 632
>YKQ0_CAEEL (P34305) Putative ATP-dependent RNA helicase C06E1.10 in chromosome| III (EC 3.6.1.-) Length = 1148 Score = 28.5 bits (62), Expect = 6.4 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +3 Query: 18 RPSEIETVVQYTITRDETTNYM*HVSGKLQQEKKKNPRL 134 +P E+ ++Y TR ETTN + G L +E +++ L Sbjct: 308 KPDEVSYQIRYEGTRSETTNILFMTDGVLMKEMEQDVML 346
>DDLB_PSEPK (Q88N74) D-alanine--D-alanine ligase B (EC 6.3.2.4)| (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B) Length = 318 Score = 28.5 bits (62), Expect = 6.4 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +1 Query: 124 IQGLLTPLTVPYRSSGAFSPPLGFDQLR 207 +QGLL L +PY SG + L D+LR Sbjct: 87 MQGLLECLGIPYTGSGILASALAMDKLR 114
>TMM24_MOUSE (Q80X80) Transmembrane protein 24| Length = 706 Score = 28.5 bits (62), Expect = 6.4 Identities = 13/36 (36%), Positives = 23/36 (63%) Frame = -3 Query: 387 LQDADSSTVSDVNSMNRVVDLSSQVQHVGAMESISV 280 +Q+AD +T SD++ V D+ S+ GA+E+ S+ Sbjct: 597 VQEADETTRSDISERPSVDDVESETGSTGALETRSL 632
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 28.5 bits (62), Expect = 6.4 Identities = 26/105 (24%), Positives = 35/105 (33%) Frame = +3 Query: 93 SGKLQQEKKKNPRLAHTPNGTLQIIRRVFTSPRL*SAERKPCSSTRRRGRGQARAKLXXX 272 SG + + P+ +H NG ++ RR SP SA P + K Sbjct: 496 SGSSSSSEDERPKRSHVKNG--EVGRRRRHSPSR-SASPSPRKRQKETSPRMQMGKRWQS 552 Query: 273 XXXXXXXXXXXXAEPATTGRRPGSCCSRPTRSKNPRPGAAGHTPS 407 + P T RR S P R + P P TPS Sbjct: 553 PVTKSGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPS 597
>DTXR_COREF (Q8FPG6) Diphtheria toxin repressor (Iron-dependent diphtheria tox| regulatory element) (Tox regulatory factor) Length = 230 Score = 28.1 bits (61), Expect = 8.3 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%) Frame = +1 Query: 310 LNLRRQVDDPVHAVHVRHGR--RIRVLELQDILQV 408 L+ R+ D + A+ + HG R+R+++L +ILQV Sbjct: 140 LDQDREPDSGIRAIDLPHGESLRVRIVQLNEILQV 174 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,190,864 Number of Sequences: 219361 Number of extensions: 1009087 Number of successful extensions: 2887 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2836 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2887 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
