ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl19f03 |
|---|---|
| Clone Library Name | barley_pub |
>UBX_MUSDO (Q25451) Homeotic protein ultrabithorax (Fragment)| Length = 248 Score = 31.6 bits (70), Expect = 0.79 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = +2 Query: 233 GERGVGNRGNPGMTLTTKNNSSAQRTKAGGQAGGG---VIRDSVC 358 G G G G+ G N ++ Q T GG AGGG +R S C Sbjct: 115 GGTGGGGGGSAGSANGANNTANGQNTSGGGGAGGGGGMPVRPSAC 159
>MDTA_SALTY (Q8ZNQ3) Multidrug resistance protein mdtA precursor (Multidrug| transporter mdtA) Length = 413 Score = 30.0 bits (66), Expect = 2.3 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 12/71 (16%) Frame = +2 Query: 245 VGNRGNPGMTLTTKNNSSAQRTK------------AGGQAGGGVIRDSVCRSSLDSSPLD 388 +GN G+ L +NN S +R K AG AG V+ D + R + + + ++ Sbjct: 330 MGNEGHFVWVLNDENNVSKKRVKIGIQDNRNVVISAGLSAGDRVVTDGIDRLT-EGAKVE 388 Query: 389 VLEQQTSVRGE 421 V+E QT+V E Sbjct: 389 VVEPQTTVADE 399
>S2A4R_HUMAN (Q9NR83) SLC2A4 regulator (GLUT4 enhancer factor) (GEF) (Huntington| disease gene regulatory region-binding protein 1) (HDBP-1) Length = 387 Score = 29.6 bits (65), Expect = 3.0 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -3 Query: 369 SDDLQTLSRITPPPACPPAFVRCALLLFLVVNVIPGLPRLPTPLSP 232 +D L +L+ ++P + PPAF R L L +P R P P P Sbjct: 254 TDGLSSLTPVSPTASMPPAFPRLELPELLEPPALPSPLRPPAPPLP 299
>AVP_HORVU (Q06572) Pyrophosphate-energized vacuolar membrane proton pump (EC| 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) Length = 762 Score = 29.3 bits (64), Expect = 3.9 Identities = 12/12 (100%), Positives = 12/12 (100%) Frame = -2 Query: 421 FATYGGLLFKYI 386 FATYGGLLFKYI Sbjct: 751 FATYGGLLFKYI 762
>FRQ_SORFI (Q09033) Frequency clock protein| Length = 997 Score = 29.3 bits (64), Expect = 3.9 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Frame = -2 Query: 265 RIAAV-TYPPFPWPLEGVMLVSPLHYRLVAPCSRRERPNVLP---RWYVPGKFSSSHDDD 98 R+A++ T P P P ++++PL VA R P LP +Y P SS DD Sbjct: 815 RLASIRTSSPLPPPRSRNLILAPLQIEYVAGEFHRLNPASLPPPAMFYPPFSTDSSWDDG 874 Query: 97 DNV 89 D++ Sbjct: 875 DDL 877
>GPR62_HUMAN (Q9BZJ7) Probable G-protein coupled receptor 62 (hGPCR8)| Length = 368 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = -3 Query: 360 LQTLSRITPPPACPPAFVRCALL 292 L LS + PPPA PPA RC++L Sbjct: 143 LGALSLLGPPPAPPPAPARCSVL 165
>MDTA_SALTI (Q8Z5F8) Multidrug resistance protein mdtA precursor (Multidrug| transporter mdtA) Length = 413 Score = 28.9 bits (63), Expect = 5.1 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 12/71 (16%) Frame = +2 Query: 245 VGNRGNPGMTLTTKNNSSAQRTK------------AGGQAGGGVIRDSVCRSSLDSSPLD 388 +GN G+ L +NN S +R K AG AG V+ D + R + + + ++ Sbjct: 330 MGNEGHFVWVLNDENNVSKKRVKIGIQDNRNVVISAGLSAGDRVVTDGIDRLT-EGAKVE 388 Query: 389 VLEQQTSVRGE 421 V+E QT++ E Sbjct: 389 VVEPQTTMADE 399
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/37 (45%), Positives = 18/37 (48%) Frame = +2 Query: 227 RPGERGVGNRGNPGMTLTTKNNSSAQRTKAGGQAGGG 337 RPG GNR NPGM QR AG + GGG Sbjct: 295 RPGGAPGGNRPNPGM--------MPQRPAAGPRPGGG 323
>RING1_DROME (Q9VB08) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (dRING1)| (dRING protein) (Sex comb extra protein) Length = 435 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +2 Query: 236 ERGVGNRGNPGMTLTTKNNSSAQRTKAGGQAGGG 337 ++ + N N G+ L ++N RTK GG GGG Sbjct: 132 QQALVNSINEGIKLQSQNRPQRFRTKGGGGGGGG 165
>MAGD1_RAT (Q9ES73) Melanoma-associated antigen D1 (MAGE-D1 antigen)| (Neurotrophin receptor-interacting MAGE homolog) (Sertoli cell necdin-related gene 1) (SNERG-1) Length = 775 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/53 (28%), Positives = 25/53 (47%) Frame = +2 Query: 263 PGMTLTTKNNSSAQRTKAGGQAGGGVIRDSVCRSSLDSSPLDVLEQQTSVRGE 421 PG T+N + A+ G AG + ++S D S +E +T +RG+ Sbjct: 192 PGADAQTQNVNQAKMADVGTSAGISETDGAAAQTSADGSQAQNVESRTIIRGK 244
>MAGD1_MOUSE (Q9QYH6) Melanoma-associated antigen D1 (MAGE-D1 antigen)| (Neurotrophin receptor-interacting MAGE homolog) (Dlxin-1) Length = 775 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/53 (28%), Positives = 25/53 (47%) Frame = +2 Query: 263 PGMTLTTKNNSSAQRTKAGGQAGGGVIRDSVCRSSLDSSPLDVLEQQTSVRGE 421 PG T+N + A+ G AG + ++S D S +E +T +RG+ Sbjct: 190 PGADAQTQNVNQAKMADVGTSAGISEADGAAAQTSADGSQTQNVESRTIIRGK 242
>MAF_AVIS4 (P23091) Transforming protein Maf| Length = 369 Score = 23.5 bits (49), Expect(2) = 8.7 Identities = 8/20 (40%), Positives = 12/20 (60%) Frame = +1 Query: 49 TAIIMISLFKGGFKHYRRHH 108 +A+I + +GG HY HH Sbjct: 159 SAVIAAAAAQGGAPHYHHHH 178 Score = 23.1 bits (48), Expect(2) = 8.7 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 6/48 (12%) Frame = +2 Query: 212 HNAFKRPGERGVGNRGN------PGMTLTTKNNSSAQRTKAGGQAGGG 337 H+ P G G G PG + +SSA + GG GGG Sbjct: 175 HHHHHHPHHGGGGGGGGHPHGAAPGSAPPSSASSSAAGSGGGGGGGGG 222
>YCI2_SCHPO (Q9Y7P6) Protein C1902.02 in chromosome III| Length = 574 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = -3 Query: 393 STSRGLESSDDLQTLSRITPPPACPP 316 STS + SSD L+T S I P A PP Sbjct: 458 STSTNMASSDALETASMIGVPSAMPP 483 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,188,258 Number of Sequences: 219361 Number of extensions: 1438917 Number of successful extensions: 4682 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4490 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4679 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
