ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
2dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
3dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
4gb|AF548005.1| Azoarcus evansii aerobic benzoate degradation gen... 48 0.019
5gb|AC160555.4| Mus musculus chromosome 5, clone RP23-387L12, com... 42 1.2
6gb|AC025501.19| Mus musculus chromosome 10, clone RP23-129O23, c... 40 4.7
7gb|AC159127.8| Mus musculus chromosome 3, clone RP24-214E8, comp... 40 4.7
8gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence 40 4.7
9gb|AC007863.15| Trypanosoma brucei chromosome 6 clone RPCI93-26G... 40 4.7
10ref|XM_540758.2| PREDICTED: Canis familiaris similar to glycosyl... 40 4.7
11emb|AJ853849.1| Sus scrofa PRSS11 gene (partial), DMBT1 gene, AW... 40 4.7
12gb|AC107368.11| Mus musculus chromosome 3, clone RP23-243N8, com... 40 4.7
13gb|AC123074.2| Mus musculus BAC clone RP23-168H19 from 10, compl... 40 4.7
14gb|AE004094.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 4.7
15emb|AL079342.17|HSDJ72A23 Human DNA sequence from clone RP1-72A2... 40 4.7
16emb|AL035477.6|PFMAL4P4 Plasmodium falciparum MAL4P4 40 4.7
17gb|AY649844.2| Schistosoma mansoni insulin receptor tyrosine kin... 40 4.7
18gb|AC109480.3| Homo sapiens chromosome 5 clone RP11-455B3, compl... 40 4.7
19gb|AC027104.6| Homo sapiens chromosome 15, clone RP11-326L17, co... 40 4.7
20gb|AC011737.10| Homo sapiens BAC clone RP11-33N4 from 2, complet... 40 4.7
21gb|AC142415.4| Mus musculus BAC clone RP23-155F24 from 10, compl... 40 4.7
22emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 4.7

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  103 bits (52), Expect = 4e-19
 Identities = 135/158 (85%), Gaps = 6/158 (3%)
 Strand = Plus / Plus

                                                                            
Query: 103      cccaaaatcatatttgaatacaagataatatacac--tctacatcaaaaaccatatggaa 160
                ||||||| ||||| ||| |||||||||||||||||  |||||||||||| ||||||| ||
Sbjct: 23202954 cccaaaaccatatctgagtacaagataatatacacactctacatcaaaa-ccatatgaaa 23203012

                                                                            
Query: 161      gggcgaccaccaatcccttgaagcgaccaatgc--atgcacaaatgaactcccccagaat 218
                 ||| ||| ||||| ||||||||| | ||||||  || ||||||||||||| |||| || 
Sbjct: 23203013 tggcaacctccaattccttgaagccagcaatgcgcattcacaaatgaactcacccacaa- 23203071

                                                      
Query: 219      aagattcaacacaaaaaattggttgacagtaccaatga 256
                | ||||||||||||| ||||||||||| ||| ||||||
Sbjct: 23203072 atgattcaacacaaagaattggttgacggtaacaatga 23203109



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>dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1562_B11
          Length = 112144

 Score =  103 bits (52), Expect = 4e-19
 Identities = 135/158 (85%), Gaps = 6/158 (3%)
 Strand = Plus / Plus

                                                                         
Query: 103   cccaaaatcatatttgaatacaagataatatacac--tctacatcaaaaaccatatggaa 160
             ||||||| ||||| ||| |||||||||||||||||  |||||||||||| ||||||| ||
Sbjct: 65868 cccaaaaccatatctgagtacaagataatatacacactctacatcaaaa-ccatatgaaa 65926

                                                                         
Query: 161   gggcgaccaccaatcccttgaagcgaccaatgc--atgcacaaatgaactcccccagaat 218
              ||| ||| ||||| ||||||||| | ||||||  || ||||||||||||| |||| || 
Sbjct: 65927 tggcaacctccaattccttgaagccagcaatgcgcattcacaaatgaactcacccacaa- 65985

                                                   
Query: 219   aagattcaacacaaaaaattggttgacagtaccaatga 256
             | ||||||||||||| ||||||||||| ||| ||||||
Sbjct: 65986 atgattcaacacaaagaattggttgacggtaacaatga 66023



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>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1699_E05
          Length = 170666

 Score =  103 bits (52), Expect = 4e-19
 Identities = 135/158 (85%), Gaps = 6/158 (3%)
 Strand = Plus / Plus

                                                                          
Query: 103    cccaaaatcatatttgaatacaagataatatacac--tctacatcaaaaaccatatggaa 160
              ||||||| ||||| ||| |||||||||||||||||  |||||||||||| ||||||| ||
Sbjct: 147138 cccaaaaccatatctgagtacaagataatatacacactctacatcaaaa-ccatatgaaa 147196

                                                                          
Query: 161    gggcgaccaccaatcccttgaagcgaccaatgc--atgcacaaatgaactcccccagaat 218
               ||| ||| ||||| ||||||||| | ||||||  || ||||||||||||| |||| || 
Sbjct: 147197 tggcaacctccaattccttgaagccagcaatgcgcattcacaaatgaactcacccacaa- 147255

                                                    
Query: 219    aagattcaacacaaaaaattggttgacagtaccaatga 256
              | ||||||||||||| ||||||||||| ||| ||||||
Sbjct: 147256 atgattcaacacaaagaattggttgacggtaacaatga 147293



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>gb|AF548005.1| Azoarcus evansii aerobic benzoate degradation gene cluster, complete
             sequence
          Length = 19112

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 32    ctgatgcaccattgttcaactcaaccga 59
             ||||||||| ||||||||||||||||||
Sbjct: 10519 ctgatgcactattgttcaactcaaccga 10546



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>gb|AC160555.4| Mus musculus chromosome 5, clone RP23-387L12, complete sequence
          Length = 196977

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 107   aaatcatatttgaatacaaga 127
             |||||||||||||||||||||
Sbjct: 60714 aaatcatatttgaatacaaga 60694



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>gb|AC025501.19| Mus musculus chromosome 10, clone RP23-129O23, complete sequence
          Length = 218156

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 109   atcatatttgaatacaagataata 132
             ||||||| ||||||||||||||||
Sbjct: 30180 atcatatctgaatacaagataata 30203



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>gb|AC159127.8| Mus musculus chromosome 3, clone RP24-214E8, complete sequence
          Length = 195609

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   ttgaatacaagataatatac 135
             ||||||||||||||||||||
Sbjct: 66803 ttgaatacaagataatatac 66822



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>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 258     gaattatggaaagaaaagca 277
               ||||||||||||||||||||
Sbjct: 1313548 gaattatggaaagaaaagca 1313529



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>gb|AC007863.15| Trypanosoma brucei chromosome 6 clone RPCI93-26G9, complete sequence
          Length = 140056

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   gaattatggaaagaaaagca 277
             ||||||||||||||||||||
Sbjct: 27365 gaattatggaaagaaaagca 27384



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>ref|XM_540758.2| PREDICTED: Canis familiaris similar to glycosyltransferase-like 1B
            (LOC483638), mRNA
          Length = 2320

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 331  tgtaccatgagctgctgctg 350
            ||||||||||||||||||||
Sbjct: 1247 tgtaccatgagctgctgctg 1228



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>emb|AJ853849.1| Sus scrofa PRSS11 gene (partial), DMBT1 gene, AWN gene, AQN-1 gene,
              PSP-II gene, PSP-I gene, AQN-3 gene and C10ORF120 gene
          Length = 270148

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 288    ttgcagccacaaaacagaagagaa 311
              |||||||||||||| |||||||||
Sbjct: 248674 ttgcagccacaaaaaagaagagaa 248697



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>gb|AC107368.11| Mus musculus chromosome 3, clone RP23-243N8, complete sequence
          Length = 253744

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    ttgaatacaagataatatac 135
              ||||||||||||||||||||
Sbjct: 246296 ttgaatacaagataatatac 246315



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>gb|AC123074.2| Mus musculus BAC clone RP23-168H19 from 10, complete sequence
          Length = 210189

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 109 atcatatttgaatacaagataata 132
           ||||||| ||||||||||||||||
Sbjct: 755 atcatatctgaatacaagataata 732



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>gb|AE004094.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 2
            of 251 of the complete chromosome
          Length = 16164

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 156  tggaagggcgaccaccaatc 175
            ||||||||||||||||||||
Sbjct: 9852 tggaagggcgaccaccaatc 9871



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>emb|AL079342.17|HSDJ72A23 Human DNA sequence from clone RP1-72A23 on chromosome 6 Contains an
             adaptor-related (clathrin-associated) protein complex 4,
             sigma 1 subunit (AP4A1) pseudogene, a novel pseudogene,
             the 5' end of the RNGTT gene for RNA guanylyltransferase
             and 5'-phosphatase (mRNA capping enzyme, CAP1A) and two
             CpG islands, complete sequence
          Length = 150541

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   gaatacaagataatatacac 137
             ||||||||||||||||||||
Sbjct: 51067 gaatacaagataatatacac 51048



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>emb|AL035477.6|PFMAL4P4 Plasmodium falciparum MAL4P4
          Length = 272698

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    aaaatcatatttgaatacaa 125
              ||||||||||||||||||||
Sbjct: 156720 aaaatcatatttgaatacaa 156701



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>gb|AY649844.2| Schistosoma mansoni insulin receptor tyrosine kinase 3 (RTK-3) mRNA,
            complete cds
          Length = 5521

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 171  caatcccttgaagcgaccaa 190
            ||||||||||||||||||||
Sbjct: 4758 caatcccttgaagcgaccaa 4777



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>gb|AC109480.3| Homo sapiens chromosome 5 clone RP11-455B3, complete sequence
          Length = 191923

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 114    atttgaatacaagataatatacac 137
              |||||||||||| |||||||||||
Sbjct: 125542 atttgaatacaaaataatatacac 125519



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>gb|AC027104.6| Homo sapiens chromosome 15, clone RP11-326L17, complete sequence
          Length = 180202

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 282   tcaaccttgcagccacaaaa 301
             ||||||||||||||||||||
Sbjct: 84712 tcaaccttgcagccacaaaa 84731



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>gb|AC011737.10| Homo sapiens BAC clone RP11-33N4 from 2, complete sequence
          Length = 176709

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    taatatacactctacatcaa 147
              ||||||||||||||||||||
Sbjct: 126762 taatatacactctacatcaa 126743



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>gb|AC142415.4| Mus musculus BAC clone RP23-155F24 from 10, complete sequence
          Length = 209693

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 109    atcatatttgaatacaagataata 132
              ||||||| ||||||||||||||||
Sbjct: 153532 atcatatctgaatacaagataata 153509



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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 251     caatgacgaattatggaaagaaaa 274
               |||||| |||||||||||||||||
Sbjct: 1817212 caatgatgaattatggaaagaaaa 1817189


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,957,093
Number of Sequences: 3902068
Number of extensions: 3957093
Number of successful extensions: 76623
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76536
Number of HSP's gapped (non-prelim): 75
length of query: 351
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 329
effective length of database: 17,147,199,772
effective search space: 5641428724988
effective search space used: 5641428724988
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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