>COPB_DICDI (Q23924) Probable coatomer subunit beta (Beta-coat protein)|
           (Beta-COP) (Fragment)
          Length = 400

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 463 NISIEKQVDGKLSGYIRIRSKTQGIALSLGDKI 365
           NI IEKQ DGK+SGYIRIR+K Q IA++LG+KI
Sbjct: 361 NICIEKQADGKISGYIRIRAKVQSIAVTLGEKI 393

>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 964

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 26/41 (63%), Positives = 34/41 (82%), Gaps = 3/41 (7%)
 Frame = -3

Query: 463  NISIEKQVD---GKLSGYIRIRSKTQGIALSLGDKITLKQK 350
            N+SIEK VD    K++G+IRIR+K+QG+ALSLGDKI+  QK
Sbjct: 918  NLSIEKPVDDPDSKVTGHIRIRAKSQGMALSLGDKISSSQK 958

>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 26/42 (61%), Positives = 33/42 (78%), Gaps = 4/42 (9%)
 Frame = -3

Query: 463  NISIEKQV----DGKLSGYIRIRSKTQGIALSLGDKITLKQK 350
            N+SIEK V    D  ++G+IRIR+K+QG+ALSLGDKI L QK
Sbjct: 908  NVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQK 949

>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 26/42 (61%), Positives = 33/42 (78%), Gaps = 4/42 (9%)
 Frame = -3

Query: 463  NISIEKQV----DGKLSGYIRIRSKTQGIALSLGDKITLKQK 350
            N+SIEK V    D  ++G+IRIR+K+QG+ALSLGDKI L QK
Sbjct: 908  NVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQK 949

>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 940

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 21/31 (67%), Positives = 28/31 (90%)
 Frame = -3

Query: 466 VNISIEKQVDGKLSGYIRIRSKTQGIALSLG 374
           +++S+EK V G +SG++RIRSKTQGIALSLG
Sbjct: 907 MSLSVEKSVSGPISGHVRIRSKTQGIALSLG 937

>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 23/42 (54%), Positives = 31/42 (73%), Gaps = 4/42 (9%)
 Frame = -3

Query: 463  NISIEKQV----DGKLSGYIRIRSKTQGIALSLGDKITLKQK 350
            N+S EK +    D  ++ +IRIR+K+QG+ALSLGDKI L QK
Sbjct: 908  NVSSEKPLHQGPDAAVTVHIRIRAKSQGMALSLGDKINLSQK 949

>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 973

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
 Frame = -3

Query: 463  NISIEKQVDGKLS---GYIRIRSKTQGIALSLGDKITLKQK 350
            N+ IEK  D K +   GY+RIRSK QG+ALSLGD++ L  K
Sbjct: 925  NLCIEK--DSKTNDVIGYVRIRSKGQGLALSLGDRVALIAK 963

>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system|
           defective) (Homeobox protein NK-2)
          Length = 723

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +1

Query: 7   KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGVGRDHCISRGH 159
           +  R+   PE ++L      TPTQ    F +HR+ +K+A + KG      +  GH
Sbjct: 565 RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHPGLLHGH 619

>HNK2_XENLA (P42587) Homeobox protein XENK-2|
          Length = 196

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 7   KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGV 129
           +  R+   PE ++L      TPTQ    F +HR+  K+A S KG+
Sbjct: 89  RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARSEKGM 133


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,691,286
Number of Sequences: 219361
Number of extensions: 1108606
Number of successful extensions: 2870
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2870
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)