Clone Name | rbastl19f01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3111 Score = 182 bits (92), Expect = 7e-43 Identities = 113/120 (94%) Strand = Plus / Minus Query: 338 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 397 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 3111 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 3052 Query: 398 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 457 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| Sbjct: 3051 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 2992
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 182 bits (92), Expect = 7e-43 Identities = 113/120 (94%) Strand = Plus / Plus Query: 338 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 397 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 10020837 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 10020896 Query: 398 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 457 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| Sbjct: 10020897 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 10020956
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F09 Length = 132713 Score = 182 bits (92), Expect = 7e-43 Identities = 113/120 (94%) Strand = Plus / Plus Query: 338 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 397 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 101119 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 101178 Query: 398 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 457 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| Sbjct: 101179 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 101238
>dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0021A04 Length = 50487 Score = 182 bits (92), Expect = 7e-43 Identities = 113/120 (94%) Strand = Plus / Plus Query: 338 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 397 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 48394 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 48453 Query: 398 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 457 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| Sbjct: 48454 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 48513
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0036E02 Length = 145931 Score = 182 bits (92), Expect = 7e-43 Identities = 113/120 (94%) Strand = Plus / Plus Query: 338 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 397 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 115330 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 115389 Query: 398 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 457 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| Sbjct: 115390 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 115449
>gb|AY103740.1| Zea mays PCO120652 mRNA sequence Length = 1013 Score = 180 bits (91), Expect = 3e-42 Identities = 121/131 (92%) Strand = Plus / Minus Query: 338 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 397 ||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| || Sbjct: 631 ttaactgccacccttctgcttgagagtaatcttgtcacctaagctgagtgcaattccctg 572 Query: 398 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 457 ||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 571 ggtcttgctccttattcggatgtaaccactgagcttgccatcatgttgcttctcaatgct 512 Query: 458 aatgttcacca 468 |||||||||| Sbjct: 511 gatgttcacca 501
>gb|BT017052.1| Zea mays clone EL01N0353H03.c mRNA sequence Length = 1032 Score = 141 bits (71), Expect = 2e-30 Identities = 116/131 (88%) Strand = Plus / Minus Query: 338 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 397 ||||||||| || ||||||||||| || |||||||| || ||||||||||||||||| || Sbjct: 638 ttaactgccacctttctgcttgagagtgatcttgtcccctaagctgagtgcaattccctg 579 Query: 398 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 457 ||||||||||||||||| ||||| || ||||||||||| ||| ||||||||||||||| Sbjct: 578 ggtcttgctccttattcgaatgtagccactgagcttgccgtcatgttgcttctcaatgct 519 Query: 458 aatgttcacca 468 |||||||||| Sbjct: 518 gatgttcacca 508
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 117 bits (59), Expect = 3e-23 Identities = 110/127 (86%) Strand = Plus / Plus Query: 342 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 401 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 16550 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 16609 Query: 402 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 461 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 16610 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 16669 Query: 462 ttcacca 468 ||||||| Sbjct: 16670 ttcacca 16676
>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24 map S20116S, complete sequence Length = 174210 Score = 117 bits (59), Expect = 3e-23 Identities = 110/127 (86%) Strand = Plus / Plus Query: 342 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 401 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 166015 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 166074 Query: 402 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 461 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 166075 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 166134 Query: 462 ttcacca 468 ||||||| Sbjct: 166135 ttcacca 166141
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 117 bits (59), Expect = 3e-23 Identities = 110/127 (86%) Strand = Plus / Plus Query: 342 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 401 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 3648878 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 3648937 Query: 402 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 461 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 3648938 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 3648997 Query: 462 ttcacca 468 ||||||| Sbjct: 3648998 ttcacca 3649004
>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full insert sequence Length = 3332 Score = 117 bits (59), Expect = 3e-23 Identities = 110/127 (86%) Strand = Plus / Minus Query: 342 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 401 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2909 Query: 402 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 461 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 2908 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 2849 Query: 462 ttcacca 468 ||||||| Sbjct: 2848 ttcacca 2842
>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full insert sequence Length = 3332 Score = 117 bits (59), Expect = 3e-23 Identities = 110/127 (86%) Strand = Plus / Minus Query: 342 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 401 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2909 Query: 402 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 461 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 2908 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 2849 Query: 462 ttcacca 468 ||||||| Sbjct: 2848 ttcacca 2842
>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full insert sequence Length = 3363 Score = 117 bits (59), Expect = 3e-23 Identities = 110/127 (86%) Strand = Plus / Minus Query: 342 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 401 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 2999 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2940 Query: 402 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 461 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 2939 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 2880 Query: 462 ttcacca 468 ||||||| Sbjct: 2879 ttcacca 2873
>dbj|AK061958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F11, full insert sequence Length = 1741 Score = 117 bits (59), Expect = 3e-23 Identities = 110/127 (86%) Strand = Plus / Minus Query: 342 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 401 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 1377 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 1318 Query: 402 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 461 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 1317 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 1258 Query: 462 ttcacca 468 ||||||| Sbjct: 1257 ttcacca 1251
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 117 bits (59), Expect = 3e-23 Identities = 110/127 (86%) Strand = Plus / Plus Query: 342 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 401 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 3657572 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 3657631 Query: 402 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 461 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 3657632 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 3657691 Query: 462 ttcacca 468 ||||||| Sbjct: 3657692 ttcacca 3657698
>gb|AY109245.1| Zea mays PCO147899 mRNA sequence Length = 751 Score = 101 bits (51), Expect = 2e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 343 tgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtct 402 ||||||||||||| || ||||| ||||||||||| |||||||| |||||||||||||||| Sbjct: 711 tgcctcccttctgttttagggtgatcttgtctcctaagctgagcgcaattccttgggtct 652 Query: 403 tgctccttattctgatgta 421 |||| ||||| |||||||| Sbjct: 651 tgcttcttatcctgatgta 633
>ref|NM_119298.2| Arabidopsis thaliana clathrin binding AT4G31490 mRNA, complete cds Length = 3306 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Minus Query: 348 cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 407 ||||| || |||||||| || |||||||| | || || ||||| ||||| ||||||||| Sbjct: 2955 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 2896 Query: 408 cttattctgatgtaacc 424 ||||| || |||||||| Sbjct: 2895 cttatccttatgtaacc 2879
>emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BAC clone F3L17 (ESSA project) Length = 94319 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Minus Query: 348 cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 407 ||||| || |||||||| || |||||||| | || || ||||| ||||| ||||||||| Sbjct: 50562 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 50503 Query: 408 cttattctgatgtaacc 424 ||||| || |||||||| Sbjct: 50502 cttatccttatgtaacc 50486 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Minus Query: 387 gcaattccttgggtcttgctccttattctgatgtaacc 424 ||||| ||||| |||||||||||||| || |||||||| Sbjct: 45214 gcaatcccttgcgtcttgctccttatccttatgtaacc 45177
>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75 Length = 196242 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Minus Query: 348 cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 407 ||||| || |||||||| || |||||||| | || || ||||| ||||| ||||||||| Sbjct: 38627 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 38568 Query: 408 cttattctgatgtaacc 424 ||||| || |||||||| Sbjct: 38567 cttatccttatgtaacc 38551 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Minus Query: 387 gcaattccttgggtcttgctccttattctgatgtaacc 424 ||||| ||||| |||||||||||||| || |||||||| Sbjct: 33279 gcaatcccttgcgtcttgctccttatccttatgtaacc 33242
>ref|NM_119297.2| Arabidopsis thaliana clathrin binding AT4G31480 mRNA, complete cds Length = 3296 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Minus Query: 387 gcaattccttgggtcttgctccttattctgatgtaacc 424 ||||| ||||| |||||||||||||| || |||||||| Sbjct: 2867 gcaatcccttgcgtcttgctccttatccttatgtaacc 2830
>gb|AC142210.1| Solanum demissum chromosome 11 BAC PGEC589 genomic sequence, complete sequence Length = 91755 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 303 ctacatgacacaattgcaacagattg 328 |||||||| ||||||||||||||||| Sbjct: 20673 ctacatgagacaattgcaacagattg 20648
>emb|AL109915.10|HSDJ120N9 Human DNA sequence from clone RP1-120N9 on chromosome 6q13-15 Contains the SNAP91 gene for synaptosomal-associated protein, 91 kD homolog (mouse) (KIAA0656) and a CpG island, complete sequence Length = 167018 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 229 aatcttttgtacattataaaaa 250 |||||||||||||||||||||| Sbjct: 106168 aatcttttgtacattataaaaa 106189
>dbj|AK221668.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL09-97-P16 Length = 1212 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Minus Query: 387 gcaattccttgggtcttgctccttattctgatgtaacc 424 ||||| ||||| |||||||||||||| || |||||||| Sbjct: 822 gcaatcccttgcgtcttgctccttatccttatgtaacc 785
>gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 129 of 218 of the complete genome Length = 11901 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 gttttttgtcaaaaaaggcct 112 ||||||||||||||||||||| Sbjct: 4932 gttttttgtcaaaaaaggcct 4912
>gb|AC134508.2| Homo sapiens 3 BAC RP11-447M4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 51315 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 210 tcttctcatccctctctttaa 230 ||||||||||||||||||||| Sbjct: 29023 tcttctcatccctctctttaa 29043
>gb|U13876.3| Caenorhabditis elegans cosmid F57B9, complete sequence Length = 39112 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 cgaaatacagtatctcaatcc 53 ||||||||||||||||||||| Sbjct: 5828 cgaaatacagtatctcaatcc 5808
>gb|AC090092.9| Homo sapiens chromosome 11, clone RP11-266A24, complete sequence Length = 101116 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 tcttcctcttctcatccctct 224 ||||||||||||||||||||| Sbjct: 82774 tcttcctcttctcatccctct 82794
>gb|AC148584.23| Gasterosteus aculeatus clone ch213-278g3, complete sequence Length = 169579 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 208 cctcttctcatccctctcttt 228 ||||||||||||||||||||| Sbjct: 41686 cctcttctcatccctctcttt 41706
>gb|AC107925.5| Homo sapiens chromosome 11, clone RP11-379A20, complete sequence Length = 170801 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 tcttcctcttctcatccctct 224 ||||||||||||||||||||| Sbjct: 7996 tcttcctcttctcatccctct 8016
>gb|AC100541.17| Mus musculus chromosome 8, clone RP23-152F18, complete sequence Length = 204424 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 307 atgacacaattgcaacagatt 327 ||||||||||||||||||||| Sbjct: 73824 atgacacaattgcaacagatt 73844
>gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, complete cds Length = 987 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 atggaagggagttgggagag 136 |||||||||||||||||||| Sbjct: 98 atggaagggagttgggagag 117
>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0025P09, complete sequence Length = 167318 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 atcttttgtacattataaaa 249 |||||||||||||||||||| Sbjct: 157323 atcttttgtacattataaaa 157304
>gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_E12, complete sequence Length = 121293 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 atcttttgtacattataaaa 249 |||||||||||||||||||| Sbjct: 28118 atcttttgtacattataaaa 28099
>gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome 18, complete sequence Length = 209579 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tcttcctcttctcatccctc 223 |||||||||||||||||||| Sbjct: 64584 tcttcctcttctcatccctc 64565
>ref|XM_754415.1| Ustilago maydis 521 hypothetical protein (UM03361.1) partial mRNA Length = 2949 Score = 40.1 bits (20), Expect = 6.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 363 gtaatcttgtctcccaagctgagtgcaattccttgggtcttgct 406 |||||||||||||||||||| | || || || ||||||||||| Sbjct: 2918 gtaatcttgtctcccaagctcaaggcgatcccctgggtcttgct 2875
>emb|CR753837.14| Zebrafish DNA sequence from clone DKEY-234K7 in linkage group 5, complete sequence Length = 135495 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gtacattataaaaacatctt 256 |||||||||||||||||||| Sbjct: 118337 gtacattataaaaacatctt 118318
>gb|BC048021.1| Xenopus laevis enzymatic glycosylation-regulating gene, mRNA (cDNA clone MGC:52826 IMAGE:4884583), complete cds Length = 3336 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 ttttgtacattataaaaaca 252 |||||||||||||||||||| Sbjct: 3216 ttttgtacattataaaaaca 3235
>ref|XM_737168.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000048.02.0) partial mRNA Length = 1161 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 aatcttttgtacattataaaaaca 252 |||||||||||||||| ||||||| Sbjct: 324 aatcttttgtacattagaaaaaca 347
>emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chromosome 20 Contains the RPL21P2 gene for ribosomal protein L21 pseudogene 2 and a novel gene, complete sequence Length = 72540 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 tgtctcccaagctgagtgca 389 |||||||||||||||||||| Sbjct: 6689 tgtctcccaagctgagtgca 6670
>emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 in linkage group 10, complete sequence Length = 167771 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 atggaagggagttgggagag 136 |||||||||||||||||||| Sbjct: 2324 atggaagggagttgggagag 2343
>gb|AC027118.9| Homo sapiens chromosome 10 clone RP11-573I11, complete sequence Length = 170255 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 cttgccatcaacttgcttct 450 |||||||||||||||||||| Sbjct: 75604 cttgccatcaacttgcttct 75623
>gb|AC094020.2| Homo sapiens chromosome 3 clone RP11-425J9, complete sequence Length = 194729 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 tcacatctattcttacacca 89 |||||||||||||||||||| Sbjct: 114772 tcacatctattcttacacca 114791
>gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, complete sequence Length = 168843 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 cccttctgcttgagggtaat 367 |||||||||||||||||||| Sbjct: 29210 cccttctgcttgagggtaat 29229
>ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA Length = 987 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 atggaagggagttgggagag 136 |||||||||||||||||||| Sbjct: 98 atggaagggagttgggagag 117
>gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone MGC:110381 IMAGE:7410517), complete cds Length = 968 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 atggaagggagttgggagag 136 |||||||||||||||||||| Sbjct: 81 atggaagggagttgggagag 100
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 atcttttgtacattataaaa 249 |||||||||||||||||||| Sbjct: 17897369 atcttttgtacattataaaa 17897350
>gb|AC106892.3| Homo sapiens BAC clone RP11-55L3 from 4, complete sequence Length = 164051 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tcttcctcttctcatccctc 223 |||||||||||||||||||| Sbjct: 129969 tcttcctcttctcatccctc 129950
>gb|AC068284.5| Homo sapiens BAC clone RP11-473K18 from 2, complete sequence Length = 110512 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 acaaacttcacatctattct 82 |||||||||||||||||||| Sbjct: 22462 acaaacttcacatctattct 22481
>gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete sequence Length = 89352 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 ctcccttctgcttgagggta 365 |||||||||||||||||||| Sbjct: 72452 ctcccttctgcttgagggta 72433
>emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chromosome X, complete sequence Length = 97756 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 aatcttttgtacattataaa 248 |||||||||||||||||||| Sbjct: 6181 aatcttttgtacattataaa 6162
>emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, complete sequence Length = 240928 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gtacattataaaaacatctt 256 |||||||||||||||||||| Sbjct: 72225 gtacattataaaaacatctt 72206
>dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53M8, complete sequence Length = 185588 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 cccttctgcttgagggtaat 367 |||||||||||||||||||| Sbjct: 134566 cccttctgcttgagggtaat 134585
>dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:CTB-271B20, complete sequence Length = 129610 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 tgtctcccaagctgagtgca 389 |||||||||||||||||||| Sbjct: 44905 tgtctcccaagctgagtgca 44886
>emb|AL132857.4|CNS01DTS Human chromosome 14 DNA sequence BAC R-896J10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 166862 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 tttgtacattataaaaacatcttt 257 ||||||||||||||||||| |||| Sbjct: 106494 tttgtacattataaaaacaacttt 106517
>dbj|AP000072.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region, section 8/19, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 cccttctgcttgagggtaat 367 |||||||||||||||||||| Sbjct: 911 cccttctgcttgagggtaat 892 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,518,612 Number of Sequences: 3902068 Number of extensions: 4518612 Number of successful extensions: 88145 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87939 Number of HSP's gapped (non-prelim): 206 length of query: 468 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 446 effective length of database: 17,147,199,772 effective search space: 7647651098312 effective search space used: 7647651098312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)