ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_184232.2| Oryza sativa (japonica cultivar-group), mRNA 86 7e-14
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 86 7e-14
3dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic D... 86 7e-14
4dbj|AK102309.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 7e-14
5dbj|AK063966.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 7e-14
6gb|AY106982.1| Zea mays PCO102337 mRNA sequence 86 7e-14
7gb|AC154761.2| Mus musculus BAC clone RP24-416E4 from chromosome... 42 0.97
8gb|AC116474.13| Mus musculus chromosome 17, clone RP23-386F9, co... 42 0.97
9gb|CP000025.1| Campylobacter jejuni RM1221, complete genome 40 3.8
10gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome 40 3.8
11emb|AL160010.14| Human DNA sequence from clone RP11-146P20 on ch... 40 3.8
12emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC... 40 3.8
13gb|AC097061.2| Homo sapiens chromosome 1 clone RP11-415L24, comp... 40 3.8
14gb|AC018793.12| Homo sapiens chromosome 11, clone RP11-437G21, c... 40 3.8
15gb|AY232508.1| Donacia japana isolate N264 cytochrome oxidase su... 40 3.8
16gb|AY232507.1| Donacia japana isolate N119 cytochrome oxidase su... 40 3.8
17gb|AY232506.1| Donacia japana isolate N79 cytochrome oxidase sub... 40 3.8
18gb|AC010894.10| Homo sapiens BAC clone RP11-483E17 from 2, compl... 40 3.8
19dbj|AB005236.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 3.8
20ref|XM_315898.2| Anopheles gambiae str. PEST ENSANGP00000004512 ... 40 3.8 
>ref|NM_184232.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3193

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                        
Query: 183  ctatgcttcgatgtgcatgttccatgtcatggggaagctcttccccagcggcaactccag 242
            |||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||  ||||
Sbjct: 3034 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 2975

                                   
Query: 243  cccgccaacctccatcgtcacgc 265
            ||| || ||||||| | ||||||
Sbjct: 2974 ccctcccacctccaccatcacgc 2952
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                           
Query: 183     ctatgcttcgatgtgcatgttccatgtcatggggaagctcttccccagcggcaactccag 242
               |||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||  ||||
Sbjct: 1701639 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 1701580

                                      
Query: 243     cccgccaacctccatcgtcacgc 265
               ||| || ||||||| | ||||||
Sbjct: 1701579 ccctcccacctccaccatcacgc 1701557
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>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504H10
          Length = 143515

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                         
Query: 183   ctatgcttcgatgtgcatgttccatgtcatggggaagctcttccccagcggcaactccag 242
             |||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||  ||||
Sbjct: 43982 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 43923

                                    
Query: 243   cccgccaacctccatcgtcacgc 265
             ||| || ||||||| | ||||||
Sbjct: 43922 ccctcccacctccaccatcacgc 43900
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>dbj|AK102309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090B18, full
            insert sequence
          Length = 3486

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                        
Query: 183  ctatgcttcgatgtgcatgttccatgtcatggggaagctcttccccagcggcaactccag 242
            |||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||  ||||
Sbjct: 3035 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 2976

                                   
Query: 243  cccgccaacctccatcgtcacgc 265
            ||| || ||||||| | ||||||
Sbjct: 2975 ccctcccacctccaccatcacgc 2953
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>dbj|AK063966.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A04, full
            insert sequence
          Length = 3193

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                        
Query: 183  ctatgcttcgatgtgcatgttccatgtcatggggaagctcttccccagcggcaactccag 242
            |||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||  ||||
Sbjct: 3034 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 2975

                                   
Query: 243  cccgccaacctccatcgtcacgc 265
            ||| || ||||||| | ||||||
Sbjct: 2974 ccctcccacctccaccatcacgc 2952
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>gb|AY106982.1| Zea mays PCO102337 mRNA sequence
          Length = 641

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                       
Query: 182 cctatgcttcgatgtgcatgttccatgtcatggggaagctcttccccagcggcaactcca 241
           |||||||||||||  |||||||||||||||||| |||||||||||| ||||||||  |||
Sbjct: 207 cctatgcttcgatccgcatgttccatgtcatggtgaagctcttcccgagcggcaatgcca 266

                  
Query: 242 gcccgcc 248
           |||||||
Sbjct: 267 gcccgcc 273
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>gb|AC154761.2| Mus musculus BAC clone RP24-416E4 from chromosome 17, complete sequence
          Length = 169027

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 204    ccatgtcatggggaagctctt 224
              |||||||||||||||||||||
Sbjct: 137763 ccatgtcatggggaagctctt 137783
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>gb|AC116474.13| Mus musculus chromosome 17, clone RP23-386F9, complete sequence
          Length = 221805

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 204    ccatgtcatggggaagctctt 224
              |||||||||||||||||||||
Sbjct: 201081 ccatgtcatggggaagctctt 201061
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>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     tttaagctctataaatttaa 106
              ||||||||||||||||||||
Sbjct: 798940 tttaagctctataaatttaa 798959
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>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 83      actttttaagctctataaat 102
               ||||||||||||||||||||
Sbjct: 1103611 actttttaagctctataaat 1103630
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>emb|AL160010.14| Human DNA sequence from clone RP11-146P20 on chromosome 10 Contains
             part of the gene for VPS10 domain receptor protein SORCS
             1, complete sequence
          Length = 158724

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   catgcagacggaagcagagg 163
             ||||||||||||||||||||
Sbjct: 93875 catgcagacggaagcagagg 93894
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>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
             3/6
          Length = 317511

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    tttaagctctataaatttaa 106
             ||||||||||||||||||||
Sbjct: 97835 tttaagctctataaatttaa 97854
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>gb|AC097061.2| Homo sapiens chromosome 1 clone RP11-415L24, complete sequence
          Length = 165311

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   atgcagacggaagcagaggc 164
             ||||||||||||||||||||
Sbjct: 90987 atgcagacggaagcagaggc 90968
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>gb|AC018793.12| Homo sapiens chromosome 11, clone RP11-437G21, complete sequence
          Length = 202956

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   aagcagaggcaaatgcagct 174
             ||||||||||||||||||||
Sbjct: 99826 aagcagaggcaaatgcagct 99807
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>gb|AY232508.1| Donacia japana isolate N264 cytochrome oxidase subunit I gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 750

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  ttttaagctctataaattta 105
           ||||||||||||||||||||
Sbjct: 645 ttttaagctctataaattta 664
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>gb|AY232507.1| Donacia japana isolate N119 cytochrome oxidase subunit I gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 750

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  ttttaagctctataaattta 105
           ||||||||||||||||||||
Sbjct: 645 ttttaagctctataaattta 664
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>gb|AY232506.1| Donacia japana isolate N79 cytochrome oxidase subunit I gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 750

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  ttttaagctctataaattta 105
           ||||||||||||||||||||
Sbjct: 645 ttttaagctctataaattta 664
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>gb|AC010894.10| Homo sapiens BAC clone RP11-483E17 from 2, complete sequence
          Length = 181663

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     agctctataaatttaaatta 110
              ||||||||||||||||||||
Sbjct: 175855 agctctataaatttaaatta 175836
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>dbj|AB005236.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK22
          Length = 82035

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    tactttttaagctctataaa 101
             ||||||||||||||||||||
Sbjct: 24387 tactttttaagctctataaa 24368
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>ref|XM_315898.2| Anopheles gambiae str. PEST ENSANGP00000004512 (ENSANGG00000003543),
            partial mRNA
          Length = 3441

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 116  gacgacgacgagtcgaacga 135
            ||||||||||||||||||||
Sbjct: 1237 gacgacgacgagtcgaacga 1256


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,397,147
Number of Sequences: 3902068
Number of extensions: 2397147
Number of successful extensions: 49377
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49276
Number of HSP's gapped (non-prelim): 101
length of query: 292
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 270
effective length of database: 17,147,199,772
effective search space: 4629743938440
effective search space used: 4629743938440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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