ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MRP_STRSU (P32653) Muramidase-released protein precursor (136 kD... 29 3.3
2SPR1_YEAST (P32603) Sporulation-specific glucan 1,3-beta-glucosi... 28 4.3
3SPR1_SACBA (Q876J2) Sporulation-specific glucan 1,3-beta-glucosi... 28 4.3
4ZN272_HUMAN (Q14592) Zinc finger protein 272 (Zinc finger protei... 28 5.7
5HELZ_HUMAN (P42694) Probable helicase with zinc-finger domain (E... 28 7.4
6SMOX1_SCHMA (Q26600) Homeobox protein SMOX-1 (Fragment) 28 7.4
7TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42 28 7.4
8PSD3_HUMAN (O43242) 26S proteasome non-ATPase regulatory subunit... 28 7.4
9TENS1_HUMAN (Q9HBL0) Tensin-1 28 7.4
10Y1217_CAMJE (Q9PN78) UPF0124 protein Cj1217c 27 9.7
11PC_DROME (P26017) Polycomb group protein Pc (Protein polycomb) 27 9.7
12AATC_YEAST (P23542) Aspartate aminotransferase, cytoplasmic (EC ... 27 9.7

>MRP_STRSU (P32653) Muramidase-released protein precursor (136 kDa surface|
           protein)
          Length = 1256

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 178 KITFRVLIHHKMQPEAS--FFHSCVISSLDSNLATTYDAPNASVNCKGSSSPSAS 336
           + T  VL  + ++P  S  F H   +++ +SN+  TYD   AS N  G+   SA+
Sbjct: 292 RTTGDVLEKYTIEPGESVTFSHPTKVNANNSNITVTYDTSLASANTPGALKFSAN 346



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>SPR1_YEAST (P32603) Sporulation-specific glucan 1,3-beta-glucosidase precursor|
           (EC 3.2.1.58) (Exo-1,3-beta-glucanase)
          Length = 445

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 263 LSSEEMTQEWKKEASGCILWCMRTLNVILWDA*NVVQ 153
           L + EMT  W       I+WC +T N I WD   ++Q
Sbjct: 398 LDAFEMTGGW-------IMWCYKTENSIEWDVEKLIQ 427



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>SPR1_SACBA (Q876J2) Sporulation-specific glucan 1,3-beta-glucosidase precursor|
           (EC 3.2.1.58) (Exo-1,3-beta-glucanase)
          Length = 445

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 263 LSSEEMTQEWKKEASGCILWCMRTLNVILWDA*NVVQ 153
           L + EMT  W       I+WC +T N I WD   ++Q
Sbjct: 398 LDAFEMTGGW-------IMWCYKTENSIEWDVEKLIQ 427



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>ZN272_HUMAN (Q14592) Zinc finger protein 272 (Zinc finger protein 460) (Zinc|
           finger protein HZF8)
          Length = 562

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 255 TGQQPCDHIRCSKCFCQL*RLVKSFS 332
           TG++P   I+C K FC+   L++ FS
Sbjct: 443 TGEKPYVCIQCGKAFCRTTNLIRHFS 468



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>HELZ_HUMAN (P42694) Probable helicase with zinc-finger domain (EC 3.6.1.-)|
          Length = 1942

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 69   PGQSVA*FNYIQDHSKRTSIQMN*PQLGLDNISCIPQNNIQ---SSHTPQ 209
            P  S+A    +QDHS ++S   + P+  ++  S  P  NI    SS T Q
Sbjct: 1777 PQDSLAQCKELQDHSNQSSFNFSSPESWVNTTSSTPYQNIPCNGSSRTAQ 1826



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>SMOX1_SCHMA (Q26600) Homeobox protein SMOX-1 (Fragment)|
          Length = 280

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 98  HPRSQQKNIHPNELTTTRPGQHFMHPT 178
           +P S Q   +PN L     G +FMHPT
Sbjct: 24  YPTSNQLKSYPNGLLNPFNGTNFMHPT 50



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>TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42|
          Length = 723

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/66 (27%), Positives = 26/66 (39%)
 Frame = +3

Query: 111 SKRTSIQMN*PQLGLDNISCIPQNNIQSSHTPQNATRSFLLPFLCHFFTGQQPCDHIRCS 290
           S +T+++       +D +  IP N    SH   +           H F    PC+H  C 
Sbjct: 114 SSKTALRTGSSDTQVDEVKSIPAN----SHLVNHLNCPMCSRLRLHSF--MLPCNHSLCE 167

Query: 291 KCFCQL 308
           KC  QL
Sbjct: 168 KCLRQL 173



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>PSD3_HUMAN (O43242) 26S proteasome non-ATPase regulatory subunit 3 (26S|
           proteasome regulatory subunit S3) (Proteasome subunit
           p58)
          Length = 534

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 186 IQSSHTPQNATRSFLLPFL 242
           +Q   T  NATR FLLPFL
Sbjct: 117 VQGFFTSNNATRDFLLPFL 135



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>TENS1_HUMAN (Q9HBL0) Tensin-1|
          Length = 1735

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 196  LIHHKMQ-PEASFFHSCVISSLDSNLATTYDAPN 294
            L HH+M  P  + FH   +SS  S+ ATT  +P+
Sbjct: 1212 LSHHQMMGPPGTGFHGSTVSSPQSSAATTPGSPS 1245



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>Y1217_CAMJE (Q9PN78) UPF0124 protein Cj1217c|
          Length = 226

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 168 CIPQNNIQSSHTPQNATRSFLLPFLC 245
           C+ Q  +Q+SH  +N    F+LP +C
Sbjct: 123 CVDQITMQNSHLDKNKFHLFILPGIC 148



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>PC_DROME (P26017) Polycomb group protein Pc (Protein polycomb)|
          Length = 390

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 166 HASHKITFRVLIHHKMQPEASFFHSCVISSLDSNLATTYDAP 291
           H  H  + R  I H     +SF H+  +   DSN +++ D P
Sbjct: 163 HHHHHESKRQRIDHSSSSNSSFTHNSFVPEPDSNSSSSEDQP 204



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>AATC_YEAST (P23542) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)|
           (Transaminase A)
          Length = 417

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -2

Query: 296 AFGASYVVARLLSSEEMTQEWKKE 225
           A+GA  +VA+LL + E+T++W K+
Sbjct: 300 AYGAK-IVAKLLETPELTEQWHKD 322


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,806,984
Number of Sequences: 219361
Number of extensions: 962451
Number of successful extensions: 2637
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2637
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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