ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KITH_MYCMS (Q8VVL0) Thymidine kinase (EC 2.7.1.21) 29 6.4
2AGLU_MUCJA (Q92442) Alpha-glucosidase precursor (EC 3.2.1.20) (M... 28 8.4

>KITH_MYCMS (Q8VVL0) Thymidine kinase (EC 2.7.1.21)|
          Length = 209

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 246 SYASRRVLVYTFAHFNPYVVHIEISITSIIRNGGSK*NAWTGHSSGE 386
           SYA +RVL +  +  N Y      S+ +II + GSK +++  HSS E
Sbjct: 43  SYAKKRVLAFKPSIDNRY------SVENIISHSGSKLDSYLVHSSDE 83



to top

>AGLU_MUCJA (Q92442) Alpha-glucosidase precursor (EC 3.2.1.20) (Maltase)|
          Length = 864

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +3

Query: 198 SVPKYKMFQLFSIFSDSYASRRVLVYTFAHFNPYVVHIEISITSIIRNGGSK*NAWTGHS 377
           ++P Y +  L+   ++S+ +R+ L+       P+V+       S     G     WTG +
Sbjct: 515 NIPHYDIHNLYG-HAESHITRQALIKHKNKIRPFVL-----TRSSFPGSGKSVGHWTGDN 568

Query: 378 SGEWPCLQTS 407
              WP L+ S
Sbjct: 569 HSFWPYLKNS 578


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,110,672
Number of Sequences: 219361
Number of extensions: 1017888
Number of successful extensions: 2156
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2156
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top