ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR759819.7| Zebrafish DNA sequence from clone CH211-178L23, ... 44 0.31
2gb|AC092819.2| Homo sapiens chromosome 8, clone RP11-716D16, com... 44 0.31
3gb|AC024601.9| Homo sapiens chromosome 10 clone RP11-262I2, comp... 44 0.31
4emb|CR354606.12| Zebrafish DNA sequence from clone CH211-252L23 ... 44 0.31
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
6dbj|AP004992.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
7dbj|AK121496.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
8emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genom... 40 4.9
9gb|AC156989.3| Mus musculus chromosome 1, clone RP23-379L2, comp... 40 4.9
10emb|BX511205.2|RN120J22 Rattus norvegicus chromosome 1 BAC RP32-... 40 4.9
11dbj|AK060651.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.9
12emb|AL672054.5| Mouse DNA sequence from clone RP23-237I22 on chr... 40 4.9

>emb|CR759819.7| Zebrafish DNA sequence from clone CH211-178L23, complete sequence
          Length = 118312

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 117   ccacatcacataactaacagcacgta 142
             |||||||||||||||||||| |||||
Sbjct: 93720 ccacatcacataactaacagtacgta 93745



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>gb|AC092819.2| Homo sapiens chromosome 8, clone RP11-716D16, complete sequence
          Length = 153310

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 23     caaagcaaacctcagagatttttaca 48
              ||||||||||| ||||||||||||||
Sbjct: 126254 caaagcaaaccccagagatttttaca 126229



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>gb|AC024601.9| Homo sapiens chromosome 10 clone RP11-262I2, complete sequence
          Length = 169293

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 21    atcaaagcaaacctcagagatt 42
             ||||||||||||||||||||||
Sbjct: 72312 atcaaagcaaacctcagagatt 72291



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>emb|CR354606.12| Zebrafish DNA sequence from clone CH211-252L23 in linkage group 18,
              complete sequence
          Length = 138838

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 117    ccacatcacataactaacagcacgta 142
              |||||||||||||||||||| |||||
Sbjct: 108314 ccacatcacataactaacagtacgta 108339



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 43       tttacacatactcctccctaatcta 67
                |||||| ||||||||||||||||||
Sbjct: 14230055 tttacatatactcctccctaatcta 14230079



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 325      tccttccagaagcacgtgtcgggcgccagccg 356
                |||||||||||||| |  ||||||||||||||
Sbjct: 14230274 tccttccagaagcaggcatcgggcgccagccg 14230305



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>dbj|AP004992.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0022O02
          Length = 176625

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 43    tttacacatactcctccctaatcta 67
             |||||| ||||||||||||||||||
Sbjct: 73519 tttacatatactcctccctaatcta 73543



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 325   tccttccagaagcacgtgtcgggcgccagccg 356
             |||||||||||||| |  ||||||||||||||
Sbjct: 73738 tccttccagaagcaggcatcgggcgccagccg 73769



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>dbj|AK121496.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033001G17, full
            insert sequence
          Length = 2971

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 43   tttacacatactcctccctaatcta 67
            |||||| ||||||||||||||||||
Sbjct: 2919 tttacatatactcctccctaatcta 2895



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 325  tccttccagaagcacgtgtcgggcgccagccg 356
            |||||||||||||| |  ||||||||||||||
Sbjct: 2700 tccttccagaagcaggcatcgggcgccagccg 2669



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>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16
          Length = 349315

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 284    agaagccgatcccggtggcg 303
              ||||||||||||||||||||
Sbjct: 338808 agaagccgatcccggtggcg 338789



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>gb|AC156989.3| Mus musculus chromosome 1, clone RP23-379L2, complete sequence
          Length = 188691

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    aaagcatatcaaagcaaacctcag 37
             ||||||||| ||||||||||||||
Sbjct: 94489 aaagcatatgaaagcaaacctcag 94512



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>emb|BX511205.2|RN120J22 Rattus norvegicus chromosome 1 BAC RP32-120J22, complete sequence
          Length = 160764

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    acgtaccaagcatggaaaaa 157
              ||||||||||||||||||||
Sbjct: 108680 acgtaccaagcatggaaaaa 108699



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>dbj|AK060651.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H04, full
            insert sequence
          Length = 1348

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 325  tccttccagaagcacgtgtcgggcgccagccg 356
            |||||||||||||| |  ||||||||||||||
Sbjct: 1117 tccttccagaagcaggcatcgggcgccagccg 1086



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>emb|AL672054.5| Mouse DNA sequence from clone RP23-237I22 on chromosome X, complete
             sequence
          Length = 187770

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   aagcatggaaaaaacaagct 164
             ||||||||||||||||||||
Sbjct: 66693 aagcatggaaaaaacaagct 66712


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,648,541
Number of Sequences: 3902068
Number of extensions: 3648541
Number of successful extensions: 50041
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50001
Number of HSP's gapped (non-prelim): 40
length of query: 367
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 345
effective length of database: 17,147,199,772
effective search space: 5915783921340
effective search space used: 5915783921340
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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