ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC113344.2| Homo sapiens chromosome 5 clone CTD-2382P15, comp... 42 0.28
2gb|AC005883.14|AC005883 Homo sapiens chromosome 17, clone RP11-9... 42 0.28
3emb|CT571265.12| Mouse DNA sequence from clone RP23-181D9 on chr... 42 0.28
4ref|NM_180131.2| Arabidopsis thaliana unknown protein AT2G46915 ... 40 1.1
5emb|CR396593.6| Zebrafish DNA sequence from clone CH211-194G1 in... 40 1.1
6gb|AC004411.3| Arabidopsis thaliana chromosome 2 clone F14M4 map... 40 1.1
7gb|AY058888.1| Arabidopsis thaliana At2g46910/F14M4.26 mRNA, com... 40 1.1
8emb|BX820786.1|CNS0A9OR Arabidopsis thaliana Full-length cDNA Co... 40 1.1
9emb|AL935051.8| Zebrafish DNA sequence from clone CH211-173A19 i... 40 1.1
10gb|AF099029.1| Homo sapiens lysozyme gene, complete cds 38 4.4
11gb|AC113304.15| Mus musculus chromosome 9, clone RP23-431B6, com... 38 4.4
12emb|CT010488.9| Mouse DNA sequence from clone RP23-133A3 on chro... 38 4.4
13gb|AC108450.4| Homo sapiens chromosome 15, clone RP11-153O17, co... 38 4.4
14emb|CR392340.11| Zebrafish DNA sequence from clone DKEY-23G12 in... 38 4.4
15gb|AC072022.19| Homo sapiens 3 BAC RP11-211G3 (Roswell Park Canc... 38 4.4
16gb|AY007725.1| Pasteurella multocida leucyl-tRNA synthetase-like... 38 4.4
17gb|AC154440.2| Mus musculus BAC clone RP24-175D9 from 9, complet... 38 4.4
18emb|BX649576.15| Zebrafish DNA sequence from clone CH211-153M5 i... 38 4.4
19emb|BX649436.12| Zebrafish DNA sequence from clone DKEYP-50F7 in... 38 4.4
20emb|Z11115.2|CEZK637 Caenorhabditis elegans Cosmid ZK637, comple... 38 4.4
21gb|AC150892.2| Mus musculus BAC clone RP24-383C4 from 5, complet... 38 4.4
22gb|AC003687.1|AC003687 Homo sapiens chromosome 17, clone HRPC29G... 38 4.4
23gb|AC140221.3| Mus musculus BAC clone RP23-281K10 from 5, comple... 38 4.4
24emb|AL732553.11| Mouse DNA sequence from clone RP23-144L20 on ch... 38 4.4

>gb|AC113344.2| Homo sapiens chromosome 5 clone CTD-2382P15, complete sequence
          Length = 128990

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 61    acaaatctggaattggaattc 81
             |||||||||||||||||||||
Sbjct: 69567 acaaatctggaattggaattc 69587



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>gb|AC005883.14|AC005883 Homo sapiens chromosome 17, clone RP11-958E11, complete sequence
          Length = 146224

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 61    acaaatctggaattggaattc 81
             |||||||||||||||||||||
Sbjct: 31709 acaaatctggaattggaattc 31729



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>emb|CT571265.12| Mouse DNA sequence from clone RP23-181D9 on chromosome 14, complete
              sequence
          Length = 206513

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 54     ggattcaacaaatctggaattggaa 78
              ||||||||||||||| |||||||||
Sbjct: 120516 ggattcaacaaatcttgaattggaa 120540



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>ref|NM_180131.2| Arabidopsis thaliana unknown protein AT2G46915 mRNA, complete cds
          Length = 2312

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 63   aaatctggaattggaattct 82
            ||||||||||||||||||||
Sbjct: 1604 aaatctggaattggaattct 1585



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>emb|CR396593.6| Zebrafish DNA sequence from clone CH211-194G1 in linkage group 5,
             complete sequence
          Length = 197143

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 55    gattcaacaaatctggaattggaa 78
             |||||||||||||||||| |||||
Sbjct: 94288 gattcaacaaatctggaactggaa 94265



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>gb|AC004411.3| Arabidopsis thaliana chromosome 2 clone F14M4 map CIC06C03, complete
             sequence
          Length = 106329

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    aaatctggaattggaattct 82
             ||||||||||||||||||||
Sbjct: 84328 aaatctggaattggaattct 84309



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>gb|AY058888.1| Arabidopsis thaliana At2g46910/F14M4.26 mRNA, complete cds
          Length = 2381

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 63   aaatctggaattggaattct 82
            ||||||||||||||||||||
Sbjct: 1673 aaatctggaattggaattct 1654



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>emb|BX820786.1|CNS0A9OR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH69ZA02 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1365

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 63  aaatctggaattggaattct 82
           ||||||||||||||||||||
Sbjct: 694 aaatctggaattggaattct 675



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>emb|AL935051.8| Zebrafish DNA sequence from clone CH211-173A19 in linkage group 5,
              complete sequence
          Length = 122151

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 55     gattcaacaaatctggaattggaa 78
              |||||||||||||||||| |||||
Sbjct: 104498 gattcaacaaatctggaactggaa 104521



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>gb|AF099029.1| Homo sapiens lysozyme gene, complete cds
          Length = 6901

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 48   agattcggattcaacaaatctgg 70
            ||||| |||||||||||||||||
Sbjct: 6191 agattaggattcaacaaatctgg 6169



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>gb|AC113304.15| Mus musculus chromosome 9, clone RP23-431B6, complete sequence
          Length = 202182

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 20     gtctggaattggaaacaga 38
              |||||||||||||||||||
Sbjct: 200601 gtctggaattggaaacaga 200619



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>emb|CT010488.9| Mouse DNA sequence from clone RP23-133A3 on chromosome 9, complete
              sequence
          Length = 219139

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 20     gtctggaattggaaacaga 38
              |||||||||||||||||||
Sbjct: 112502 gtctggaattggaaacaga 112520



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>gb|AC108450.4| Homo sapiens chromosome 15, clone RP11-153O17, complete sequence
          Length = 146943

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 78    attctctaggaacctcctt 96
             |||||||||||||||||||
Sbjct: 68377 attctctaggaacctcctt 68359



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>emb|CR392340.11| Zebrafish DNA sequence from clone DKEY-23G12 in linkage group 20,
              complete sequence
          Length = 247887

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 32     aaacagacctgaacacaga 50
              |||||||||||||||||||
Sbjct: 187758 aaacagacctgaacacaga 187776



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>gb|AC072022.19| Homo sapiens 3 BAC RP11-211G3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 125395

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    gtctggaattggaaacaga 38
             |||||||||||||||||||
Sbjct: 86851 gtctggaattggaaacaga 86869



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>gb|AY007725.1| Pasteurella multocida leucyl-tRNA synthetase-like protein gene,
            partial cds; transferrin binding protein A (tbpA) gene,
            complete cds; and insertion sequence IS1016 transposase
            (tnp) pseudogene, complete sequence
          Length = 5667

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 47   cagattcggattcaacaaa 65
            |||||||||||||||||||
Sbjct: 2384 cagattcggattcaacaaa 2402



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>gb|AC154440.2| Mus musculus BAC clone RP24-175D9 from 9, complete sequence
          Length = 162520

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    gtctggaattggaaacaga 38
             |||||||||||||||||||
Sbjct: 58364 gtctggaattggaaacaga 58346



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>emb|BX649576.15| Zebrafish DNA sequence from clone CH211-153M5 in linkage group 18,
             complete sequence
          Length = 108124

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 38    acctgaacacagattcggattcaacaa 64
             ||||||||||||||| | |||||||||
Sbjct: 54775 acctgaacacagatttgcattcaacaa 54801



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>emb|BX649436.12| Zebrafish DNA sequence from clone DKEYP-50F7 in linkage group 20,
             complete sequence
          Length = 99233

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    aaacagacctgaacacaga 50
             |||||||||||||||||||
Sbjct: 15933 aaacagacctgaacacaga 15951



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>emb|Z11115.2|CEZK637 Caenorhabditis elegans Cosmid ZK637, complete sequence
          Length = 40699

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 62    caaatctggaattggaatt 80
             |||||||||||||||||||
Sbjct: 38825 caaatctggaattggaatt 38843



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>gb|AC150892.2| Mus musculus BAC clone RP24-383C4 from 5, complete sequence
          Length = 168742

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 79     ttctctaggaacctccttc 97
              |||||||||||||||||||
Sbjct: 156993 ttctctaggaacctccttc 157011



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>gb|AC003687.1|AC003687 Homo sapiens chromosome 17, clone HRPC29G21, complete sequence
          Length = 141263

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 48    agattcggattcaacaaatctgg 70
             ||||| |||||||||||||||||
Sbjct: 75231 agattaggattcaacaaatctgg 75253



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>gb|AC140221.3| Mus musculus BAC clone RP23-281K10 from 5, complete sequence
          Length = 184203

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 79     ttctctaggaacctccttc 97
              |||||||||||||||||||
Sbjct: 139168 ttctctaggaacctccttc 139150



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>emb|AL732553.11| Mouse DNA sequence from clone RP23-144L20 on chromosome 4, complete
            sequence
          Length = 33734

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 29   tggaaacagacctgaacac 47
            |||||||||||||||||||
Sbjct: 5504 tggaaacagacctgaacac 5486


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 829,889
Number of Sequences: 3902068
Number of extensions: 829889
Number of successful extensions: 54334
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54290
Number of HSP's gapped (non-prelim): 44
length of query: 100
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 79
effective length of database: 17,151,101,840
effective search space: 1354937045360
effective search space used: 1354937045360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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