Clone Name | rbastl19e01 |
---|---|
Clone Library Name | barley_pub |
>gb|AC113344.2| Homo sapiens chromosome 5 clone CTD-2382P15, complete sequence Length = 128990 Score = 42.1 bits (21), Expect = 0.28 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 acaaatctggaattggaattc 81 ||||||||||||||||||||| Sbjct: 69567 acaaatctggaattggaattc 69587
>gb|AC005883.14|AC005883 Homo sapiens chromosome 17, clone RP11-958E11, complete sequence Length = 146224 Score = 42.1 bits (21), Expect = 0.28 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 acaaatctggaattggaattc 81 ||||||||||||||||||||| Sbjct: 31709 acaaatctggaattggaattc 31729
>emb|CT571265.12| Mouse DNA sequence from clone RP23-181D9 on chromosome 14, complete sequence Length = 206513 Score = 42.1 bits (21), Expect = 0.28 Identities = 24/25 (96%) Strand = Plus / Plus Query: 54 ggattcaacaaatctggaattggaa 78 ||||||||||||||| ||||||||| Sbjct: 120516 ggattcaacaaatcttgaattggaa 120540
>ref|NM_180131.2| Arabidopsis thaliana unknown protein AT2G46915 mRNA, complete cds Length = 2312 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aaatctggaattggaattct 82 |||||||||||||||||||| Sbjct: 1604 aaatctggaattggaattct 1585
>emb|CR396593.6| Zebrafish DNA sequence from clone CH211-194G1 in linkage group 5, complete sequence Length = 197143 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 gattcaacaaatctggaattggaa 78 |||||||||||||||||| ||||| Sbjct: 94288 gattcaacaaatctggaactggaa 94265
>gb|AC004411.3| Arabidopsis thaliana chromosome 2 clone F14M4 map CIC06C03, complete sequence Length = 106329 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aaatctggaattggaattct 82 |||||||||||||||||||| Sbjct: 84328 aaatctggaattggaattct 84309
>gb|AY058888.1| Arabidopsis thaliana At2g46910/F14M4.26 mRNA, complete cds Length = 2381 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aaatctggaattggaattct 82 |||||||||||||||||||| Sbjct: 1673 aaatctggaattggaattct 1654
>emb|BX820786.1|CNS0A9OR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH69ZA02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1365 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aaatctggaattggaattct 82 |||||||||||||||||||| Sbjct: 694 aaatctggaattggaattct 675
>emb|AL935051.8| Zebrafish DNA sequence from clone CH211-173A19 in linkage group 5, complete sequence Length = 122151 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 gattcaacaaatctggaattggaa 78 |||||||||||||||||| ||||| Sbjct: 104498 gattcaacaaatctggaactggaa 104521
>gb|AF099029.1| Homo sapiens lysozyme gene, complete cds Length = 6901 Score = 38.2 bits (19), Expect = 4.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 48 agattcggattcaacaaatctgg 70 ||||| ||||||||||||||||| Sbjct: 6191 agattaggattcaacaaatctgg 6169
>gb|AC113304.15| Mus musculus chromosome 9, clone RP23-431B6, complete sequence Length = 202182 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 gtctggaattggaaacaga 38 ||||||||||||||||||| Sbjct: 200601 gtctggaattggaaacaga 200619
>emb|CT010488.9| Mouse DNA sequence from clone RP23-133A3 on chromosome 9, complete sequence Length = 219139 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 gtctggaattggaaacaga 38 ||||||||||||||||||| Sbjct: 112502 gtctggaattggaaacaga 112520
>gb|AC108450.4| Homo sapiens chromosome 15, clone RP11-153O17, complete sequence Length = 146943 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 78 attctctaggaacctcctt 96 ||||||||||||||||||| Sbjct: 68377 attctctaggaacctcctt 68359
>emb|CR392340.11| Zebrafish DNA sequence from clone DKEY-23G12 in linkage group 20, complete sequence Length = 247887 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 aaacagacctgaacacaga 50 ||||||||||||||||||| Sbjct: 187758 aaacagacctgaacacaga 187776
>gb|AC072022.19| Homo sapiens 3 BAC RP11-211G3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125395 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 gtctggaattggaaacaga 38 ||||||||||||||||||| Sbjct: 86851 gtctggaattggaaacaga 86869
>gb|AY007725.1| Pasteurella multocida leucyl-tRNA synthetase-like protein gene, partial cds; transferrin binding protein A (tbpA) gene, complete cds; and insertion sequence IS1016 transposase (tnp) pseudogene, complete sequence Length = 5667 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 cagattcggattcaacaaa 65 ||||||||||||||||||| Sbjct: 2384 cagattcggattcaacaaa 2402
>gb|AC154440.2| Mus musculus BAC clone RP24-175D9 from 9, complete sequence Length = 162520 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 gtctggaattggaaacaga 38 ||||||||||||||||||| Sbjct: 58364 gtctggaattggaaacaga 58346
>emb|BX649576.15| Zebrafish DNA sequence from clone CH211-153M5 in linkage group 18, complete sequence Length = 108124 Score = 38.2 bits (19), Expect = 4.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 38 acctgaacacagattcggattcaacaa 64 ||||||||||||||| | ||||||||| Sbjct: 54775 acctgaacacagatttgcattcaacaa 54801
>emb|BX649436.12| Zebrafish DNA sequence from clone DKEYP-50F7 in linkage group 20, complete sequence Length = 99233 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 aaacagacctgaacacaga 50 ||||||||||||||||||| Sbjct: 15933 aaacagacctgaacacaga 15951
>emb|Z11115.2|CEZK637 Caenorhabditis elegans Cosmid ZK637, complete sequence Length = 40699 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 caaatctggaattggaatt 80 ||||||||||||||||||| Sbjct: 38825 caaatctggaattggaatt 38843
>gb|AC150892.2| Mus musculus BAC clone RP24-383C4 from 5, complete sequence Length = 168742 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 ttctctaggaacctccttc 97 ||||||||||||||||||| Sbjct: 156993 ttctctaggaacctccttc 157011
>gb|AC003687.1|AC003687 Homo sapiens chromosome 17, clone HRPC29G21, complete sequence Length = 141263 Score = 38.2 bits (19), Expect = 4.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 48 agattcggattcaacaaatctgg 70 ||||| ||||||||||||||||| Sbjct: 75231 agattaggattcaacaaatctgg 75253
>gb|AC140221.3| Mus musculus BAC clone RP23-281K10 from 5, complete sequence Length = 184203 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 ttctctaggaacctccttc 97 ||||||||||||||||||| Sbjct: 139168 ttctctaggaacctccttc 139150
>emb|AL732553.11| Mouse DNA sequence from clone RP23-144L20 on chromosome 4, complete sequence Length = 33734 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 tggaaacagacctgaacac 47 ||||||||||||||||||| Sbjct: 5504 tggaaacagacctgaacac 5486 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 829,889 Number of Sequences: 3902068 Number of extensions: 829889 Number of successful extensions: 54334 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54290 Number of HSP's gapped (non-prelim): 44 length of query: 100 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 79 effective length of database: 17,151,101,840 effective search space: 1354937045360 effective search space used: 1354937045360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)