Clone Name | rbastl19d10 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000031.1| Dasypus novemcinctus target 116 genomic scaffold Length = 288075 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 116 aataatacagcctacataaaaga 138 ||||||||||||||||||||||| Sbjct: 151492 aataatacagcctacataaaaga 151514
>emb|Z12028.1|LPBFRUCG L.pimpinellifolium gene encoding vacuolar invertase Length = 10965 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 85 cacaagaaatcaagtgatgttt 106 |||||||||||||||||||||| Sbjct: 1280 cacaagaaatcaagtgatgttt 1301
>emb|Z12027.1|LEBFRUCG L.esculentum gene for vacuolar invertase Length = 10798 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 85 cacaagaaatcaagtgatgttt 106 |||||||||||||||||||||| Sbjct: 1280 cacaagaaatcaagtgatgttt 1301
>gb|AC105247.16| Homo sapiens chromosome 18, clone CTD-2545G7, complete sequence Length = 165814 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 286 ccttccttttttcctttacct 306 ||||||||||||||||||||| Sbjct: 63604 ccttccttttttcctttacct 63584
>emb|AL390840.17| Human DNA sequence from clone RP13-213K19 on chromosome X Contains a tubulin beta polypeptide pseudogene, complete sequence Length = 197611 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 tcatcgtcccttcctttttt 297 |||||||||||||||||||| Sbjct: 163835 tcatcgtcccttcctttttt 163854
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 ctggctcgcgcgcttggcgc 426 |||||||||||||||||||| Sbjct: 3794473 ctggctcgcgcgcttggcgc 3794492
>gb|AC087342.6| Homo sapiens chromosome 8, clone RP11-540E4, complete sequence Length = 151023 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 ttgcaaaacgcaattctgct 348 |||||||||||||||||||| Sbjct: 43989 ttgcaaaacgcaattctgct 43970
>gb|AC124037.5| Mus Musculus chromosome 4 BAC, clone CT7-104L5 strain 129Sv ES cell line, Complete Sequence, complete sequence Length = 134412 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ggagagatagacaagggcat 28 |||||||||||||||||||| Sbjct: 2195 ggagagatagacaagggcat 2214
>gb|AC092958.4| Homo sapiens 3 BAC RP11-639B1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162692 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 cttccttttttcctttacct 306 |||||||||||||||||||| Sbjct: 76602 cttccttttttcctttacct 76583
>gb|AC068020.7| Homo sapiens chromosome 8, clone RP11-556O5, complete sequence Length = 203411 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ttgcaaaacgcaattctgct 348 |||||||||||||||||||| Sbjct: 126950 ttgcaaaacgcaattctgct 126969
>gb|AC139453.10| Homo sapiens 3 BAC RP11-803B1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 149461 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ttgcaaaacgcaattctgct 348 |||||||||||||||||||| Sbjct: 95693 ttgcaaaacgcaattctgct 95712
>gb|AF217970.1|AF217970 Homo sapiens clone PP1195 unknown mRNA Length = 2854 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ttgcaaaacgcaattctgct 348 |||||||||||||||||||| Sbjct: 698 ttgcaaaacgcaattctgct 717
>gb|U13503.1|HIV1U13503 Human immunodeficiency virus type 1, isolate 020 clone 08 from Brazil, envelope glycoprotein (env) gene, V1V2 region, partial cds Length = 273 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 ggaaaacggagagatagacaaggg 25 |||||| ||||||||||||||||| Sbjct: 96 ggaaaaaggagagatagacaaggg 119
>emb|AL671866.8| Mouse DNA sequence from clone RP23-59L24 on chromosome 4, complete sequence Length = 230447 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 ggagagatagacaagggcat 28 |||||||||||||||||||| Sbjct: 167449 ggagagatagacaagggcat 167430 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,137,329 Number of Sequences: 3902068 Number of extensions: 4137329 Number of successful extensions: 77407 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77369 Number of HSP's gapped (non-prelim): 38 length of query: 454 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 432 effective length of database: 17,147,199,772 effective search space: 7407590301504 effective search space used: 7407590301504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)