ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TFDA_BURSR (Q45423) Alpha-ketoglutarate-dependent 2,4-dichloroph... 32 0.49
2TFDA_RALEJ (P10088) Alpha-ketoglutarate-dependent 2,4-dichloroph... 29 2.4
3LOX5_MESAU (P51399) Arachidonate 5-lipoxygenase (EC 1.13.11.34) ... 28 4.2
4MYB_BOVIN (P46200) Myb proto-oncogene protein (C-myb) 27 9.3
5AGLU_CANTS (P29064) Alpha-glucosidase precursor (EC 3.2.1.20) (M... 27 9.3

>TFDA_BURSR (Q45423) Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate|
           dioxygenase (EC 1.14.11.-) (2,4-D dioxygenase)
          Length = 297

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 288 ADSAAVQVPGRPGRPLNHWNKMASQPCSTYAILLAATLLPSAGNTNF 148
           A++ A +V G     L H +    QP + Y++L A  L PS G+T F
Sbjct: 97  AEADAREVVGNFANQLWHSDSSFQQPAARYSMLSAIVLPPSGGDTEF 143



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>TFDA_RALEJ (P10088) Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate|
           dioxygenase (EC 1.14.11.-) (2,4-D dioxygenase)
          Length = 287

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 288 ADSAAVQVPGRPGRPLNHWNKMASQPCSTYAILLAATLLPSAGNTNF 148
           A   A +V G     L H +    QP + Y++L A  + PS G+T F
Sbjct: 97  AQRDAREVVGNFANQLWHSDSSFQQPAARYSMLSAVVVPPSGGDTEF 143



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>LOX5_MESAU (P51399) Arachidonate 5-lipoxygenase (EC 1.13.11.34)|
           (5-lipoxygenase) (5-LO)
          Length = 672

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 41  KRLYNLPKVLPTYSETTAVSFSRH---EK*SQERNILTIKFVLPADGKSVAANRMAYVEH 211
           KR   LP+ LP  +E    S  RH   E+  QE NI  + + L  DG  + AN+     H
Sbjct: 245 KRCRELPQKLPVTTEMVECSLERHLSLEQEVQEGNIFIVDYEL-LDG--IDANKTDPCTH 301

Query: 212 GWLA 223
            +LA
Sbjct: 302 QFLA 305



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>MYB_BOVIN (P46200) Myb proto-oncogene protein (C-myb)|
          Length = 640

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 20/46 (43%), Positives = 23/46 (50%)
 Frame = +3

Query: 213 AGSPFCSNG*EGDQGDRGLAQQPNLQRFTQKQKFLEHPRYIITSSV 350
           AG+ FCSN  EGD          N Q FTQ     + P  I+TSSV
Sbjct: 537 AGNFFCSNHWEGD--------SLNTQLFTQASPVADMPN-ILTSSV 573



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>AGLU_CANTS (P29064) Alpha-glucosidase precursor (EC 3.2.1.20) (Maltase)|
           [Contains: Alpha-glucosidase subunit 1;
           Alpha-glucosidase subunit 2]
          Length = 1070

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 246 GDQGDRGLAQQPNLQRFTQKQKFLEHPRYIITSSVFGGES 365
           G  GD+   + PN Q     Q++L +P Y I + +   E+
Sbjct: 618 GGNGDKFGPEDPNYQYANSSQRYLSNPPYAIHNGIHISET 657


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,288,108
Number of Sequences: 219361
Number of extensions: 1119925
Number of successful extensions: 2912
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2912
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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