>gb|AC144459.8| Medicago truncatula clone mth2-23o13, complete sequence
          Length = 114098

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 134   aatatattaacaataaagtttg 155
             ||||||||||||||||||||||
Sbjct: 93512 aatatattaacaataaagtttg 93491

>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 293     gtttacacaaaaacaaaaatt 313
               |||||||||||||||||||||
Sbjct: 2398457 gtttacacaaaaacaaaaatt 2398437

>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 293     gtttacacaaaaacaaaaatt 313
               |||||||||||||||||||||
Sbjct: 2350274 gtttacacaaaaacaaaaatt 2350254

>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 293     gtttacacaaaaacaaaaatt 313
               |||||||||||||||||||||
Sbjct: 2350203 gtttacacaaaaacaaaaatt 2350183

>gb|AC104686.2| Homo sapiens BAC clone RP11-74M11 from 4, complete sequence
          Length = 149964

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 299   acaaaaacaaaaatttctgga 319
             |||||||||||||||||||||
Sbjct: 39981 acaaaaacaaaaatttctgga 40001

>gb|AC158497.2| Medicago truncatula chromosome 2 BAC clone mth2-48e18, complete
             sequence
          Length = 146321

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 300   caaaaacaaaaatttctggaa 320
             |||||||||||||||||||||
Sbjct: 24817 caaaaacaaaaatttctggaa 24837

>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 293     gtttacacaaaaacaaaaatt 313
               |||||||||||||||||||||
Sbjct: 2350150 gtttacacaaaaacaaaaatt 2350130

>emb|AL121840.4|CNS01DSR Human chromosome 14 DNA sequence BAC C-2251F13 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 93432

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 138   tattaacaataaagtttgtat 158
             |||||||||||||||||||||
Sbjct: 61915 tattaacaataaagtttgtat 61895

>emb|AL805971.6| Mouse DNA sequence from clone RP23-143H1 on chromosome X, complete
              sequence
          Length = 107283

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 148    aaagtttgtattgcccgctga 168
              |||||||||||||||||||||
Sbjct: 103457 aaagtttgtattgcccgctga 103437

>gb|AF024495.2| Caenorhabditis elegans cosmid R02D1, complete sequence
          Length = 5027

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 306  caaaaatttctggaacatcc 325
            ||||||||||||||||||||
Sbjct: 4777 caaaaatttctggaacatcc 4796

>gb|AC132323.3| Mus musculus BAC clone RP24-268M17 from chromosome 9, complete sequence
          Length = 182469

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    atattaacaataaagtttgt 156
              ||||||||||||||||||||
Sbjct: 176578 atattaacaataaagtttgt 176597

>gb|AC110564.7| Mus musculus chromosome 12, clone RP23-292A16, complete sequence
          Length = 211576

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   gtttacacaaaaacaaaaat 312
             ||||||||||||||||||||
Sbjct: 95687 gtttacacaaaaacaaaaat 95706

>gb|AC163654.2| Mus musculus BAC clone RP23-259M14 from chromosome 16, complete
             sequence
          Length = 159273

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 14    tgcatacaaacccctaccaaaaac 37
             ||||||||||| ||||||||||||
Sbjct: 32179 tgcatacaaactcctaccaaaaac 32156

>gb|AC023736.4| Drosophila melanogaster X BAC RP98-4P5 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 165052

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    acaaaaacaaaaatttctgg 318
              ||||||||||||||||||||
Sbjct: 117029 acaaaaacaaaaatttctgg 117048

>gb|AC093844.3| Homo sapiens BAC clone RP11-451F20 from 4, complete sequence
          Length = 196044

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 295   ttacacaaaaacaaaaattt 314
             ||||||||||||||||||||
Sbjct: 58574 ttacacaaaaacaaaaattt 58555

>gb|AC068945.7| Homo sapiens BAC clone RP11-789C1 from 4, complete sequence
          Length = 219476

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    tctgaaacaacagctgtgtc 99
             ||||||||||||||||||||
Sbjct: 63759 tctgaaacaacagctgtgtc 63740

>emb|BX276188.11| Zebrafish DNA sequence from clone CH211-245A19, complete sequence
          Length = 177660

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 134   aatatattaacaataaagtttgta 157
             |||||||| |||||||||||||||
Sbjct: 17735 aatatattcacaataaagtttgta 17712

>gb|AF125951.1| Caenorhabditis elegans cosmid D2063, complete sequence
          Length = 18125

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 306  caaaaatttctggaacatcc 325
            ||||||||||||||||||||
Sbjct: 1650 caaaaatttctggaacatcc 1669

>ref|NM_071793.4| Caenorhabditis elegans Nuclear Hormone Receptor family member
           (nhr-125) (nhr-125) mRNA, complete cds
          Length = 2339

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 306 caaaaatttctggaacatcc 325
           ||||||||||||||||||||
Sbjct: 179 caaaaatttctggaacatcc 160

>emb|BX119979.9| Zebrafish DNA sequence from clone CH211-201G8 in linkage group 1,
             complete sequence
          Length = 194023

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   tttacacaaaaacaaaaatt 313
             ||||||||||||||||||||
Sbjct: 64816 tttacacaaaaacaaaaatt 64797

>gb|AC093744.2| Homo sapiens BAC clone RP11-25B14 from 4, complete sequence
          Length = 188914

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     atacaaatgcatacaaaccc 26
             ||||||||||||||||||||
Sbjct: 43849 atacaaatgcatacaaaccc 43868

>gb|AC163699.4| Gallus gallus BAC clone CH261-138A17 from chromosome unknown, complete
              sequence
          Length = 240555

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 301    aaaaacaaaaatttctggaa 320
              ||||||||||||||||||||
Sbjct: 149380 aaaaacaaaaatttctggaa 149361

>gb|AC009716.22| Homo sapiens chromosome 18, clone RP11-504I13, complete sequence
          Length = 211981

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    gcctacttattctgaaacaa 89
             ||||||||||||||||||||
Sbjct: 70811 gcctacttattctgaaacaa 70792

>gb|AY104615.1| Zea mays PCO111783 mRNA sequence
          Length = 2510

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 69   tgcctacttattctgaaacaacagctgt 96
            ||||||||||||| || |||||||||||
Sbjct: 2330 tgcctacttattccgatacaacagctgt 2303

>gb|AE003443.2| Drosophila melanogaster chromosome X, section 27 of 74 of the complete
              sequence
          Length = 299153

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    acaaaaacaaaaatttctgg 318
              ||||||||||||||||||||
Sbjct: 273911 acaaaaacaaaaatttctgg 273930

>emb|AL161670.4|CNS01RHD Human chromosome 14 DNA sequence BAC R-804M7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163923

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 299   acaaaaacaaaaatttctgg 318
             ||||||||||||||||||||
Sbjct: 71834 acaaaaacaaaaatttctgg 71853

>emb|BX511083.17| Zebrafish DNA sequence from clone CH211-195F22 in linkage group 1,
             complete sequence
          Length = 211668

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   tttacacaaaaacaaaaatt 313
             ||||||||||||||||||||
Sbjct: 79436 tttacacaaaaacaaaaatt 79417

>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 135     atatattaacaataaagttt 154
               ||||||||||||||||||||
Sbjct: 2011992 atatattaacaataaagttt 2011973

>gb|AC111202.5| Mus musculus BAC clone RP23-338I3 from 9, complete sequence
          Length = 200266

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    atattaacaataaagtttgt 156
              ||||||||||||||||||||
Sbjct: 187047 atattaacaataaagtttgt 187028


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,459,676
Number of Sequences: 3902068
Number of extensions: 4459676
Number of successful extensions: 91719
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91526
Number of HSP's gapped (non-prelim): 193
length of query: 370
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 348
effective length of database: 17,147,199,772
effective search space: 5967225520656
effective search space used: 5967225520656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)