ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467690.1| Oryza sativa (japonica cultivar-group), mRNA 78 3e-12
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-12
3dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-12
4dbj|AK099699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-12
5gb|AC006991.3|AC006991 Homo sapiens BAC clone RP11-270H4 from Y,... 40 0.75
6gb|AC007322.4|AC007322 Homo sapiens BAC clone RP11-553C13 from Y... 40 0.75
7gb|AC008175.2|AC008175 Homo sapiens BAC clone RP11-427G18 from Y... 40 0.75
8gb|AC009947.2|AC009947 Homo sapiens BAC clone RP11-39P20 from Y,... 40 0.75
9ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 40 0.75
10gb|AY103745.1| Zea mays PCO097601 mRNA sequence 40 0.75
11gb|AC156624.1| Ornithorhynchus anatinus clone OA_Bb-193E18, comp... 40 0.75
12gb|U36616.1|HSYRRMC01 Human Y-chromosome RNA recognition motif p... 40 0.75
13gb|AC124779.4| Mus musculus BAC clone RP23-100O18 from chromosom... 38 3.0
14gb|AC138453.8| Medicago truncatula clone mth2-20m14, complete se... 38 3.0
15emb|AL138957.13| Human DNA sequence from clone RP11-203P2 on chr... 38 3.0
16emb|AL096771.11|HSJ238D15 Human DNA sequence from clone RP1-238D... 38 3.0
17gb|AC158963.3| Mus musculus chromosome 1, clone RP23-321A12, com... 38 3.0
18gb|AC078985.14| Homo sapiens 3q BAC RP11-82C9 (Roswell Park Canc... 38 3.0
19gb|AC091576.11| Homo sapiens chromosome 18, clone RP11-711I10, c... 38 3.0
20gb|AC153370.13| Mus musculus 10 BAC RP23-281M13 (Roswell Park Ca... 38 3.0
21gb|AC091843.3| Homo sapiens chromosome 5 clone CTD-2185O23, comp... 38 3.0
22dbj|AK143943.1| Mus musculus adult male kidney cDNA, RIKEN full-... 38 3.0
23dbj|AK083575.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 38 3.0
24gb|AC158599.7| Mus musculus 10 BAC RP23-122O12 (Roswell Park Can... 38 3.0
25gb|AC015583.34| Mus musculus chromosome 6, clone RP23-329P9, com... 38 3.0
26gb|AC131084.13| Mus musculus chromosome 1, clone RP23-450D2, com... 38 3.0
27ref|NM_010449.2| Mus musculus homeo box A1 (Hoxa1), mRNA 38 3.0
28gb|AC091106.17| Mus musculus chromosome 6, clone RP23-103L13, co... 38 3.0
29gb|M22115.1|MUSERA1A Mouse ERA-1-993 mRNA, complete cds, and alt... 38 3.0 
>ref|XM_467690.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3215

 Score = 77.8 bits (39), Expect = 3e-12
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                           
Query: 21   atatttctataaacaactgaggtcctctggatacacaccattcatgc 67
            |||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 3037 atatttctatgaacaactgagatcctctggatacacaccattcatgc 2991
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 77.8 bits (39), Expect = 3e-12
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                               
Query: 21       atatttctataaacaactgaggtcctctggatacacaccattcatgc 67
                |||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 30880346 atatttctatgaacaactgagatcctctggatacacaccattcatgc 30880392
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>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684F11
          Length = 147731

 Score = 77.8 bits (39), Expect = 3e-12
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                            
Query: 21    atatttctataaacaactgaggtcctctggatacacaccattcatgc 67
             |||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 63923 atatttctatgaacaactgagatcctctggatacacaccattcatgc 63969
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>dbj|AK099699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K16, full
            insert sequence
          Length = 3215

 Score = 77.8 bits (39), Expect = 3e-12
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                           
Query: 21   atatttctataaacaactgaggtcctctggatacacaccattcatgc 67
            |||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 3037 atatttctatgaacaactgagatcctctggatacacaccattcatgc 2991
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>gb|AC006991.3|AC006991 Homo sapiens BAC clone RP11-270H4 from Y, complete sequence
          Length = 173242

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     catacataacctacatattt 26
             ||||||||||||||||||||
Sbjct: 54222 catacataacctacatattt 54203
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>gb|AC007322.4|AC007322 Homo sapiens BAC clone RP11-553C13 from Y, complete sequence
          Length = 184215

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     catacataacctacatattt 26
             ||||||||||||||||||||
Sbjct: 88857 catacataacctacatattt 88876
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>gb|AC008175.2|AC008175 Homo sapiens BAC clone RP11-427G18 from Y, complete sequence
          Length = 205237

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      catacataacctacatattt 26
              ||||||||||||||||||||
Sbjct: 199476 catacataacctacatattt 199457
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>gb|AC009947.2|AC009947 Homo sapiens BAC clone RP11-39P20 from Y, complete sequence
          Length = 149230

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      catacataacctacatattt 26
              ||||||||||||||||||||
Sbjct: 110799 catacataacctacatattt 110818
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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 7       catacataacctacatattt 26
               ||||||||||||||||||||
Sbjct: 4313000 catacataacctacatattt 4312981



 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 7       catacataacctacatattt 26
               ||||||||||||||||||||
Sbjct: 1735844 catacataacctacatattt 1735863



 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      catacataacctacatattt 26
              ||||||||||||||||||||
Sbjct: 838571 catacataacctacatattt 838552



 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      catacataacctacatattt 26
              ||||||||||||||||||||
Sbjct: 126052 catacataacctacatattt 126071
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>gb|AY103745.1| Zea mays PCO097601 mRNA sequence
          Length = 1567

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 15   acctacatatttctataaacaact 38
            ||||| ||||||||||||||||||
Sbjct: 1509 acctatatatttctataaacaact 1486
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>gb|AC156624.1| Ornithorhynchus anatinus clone OA_Bb-193E18, complete sequence
          Length = 162554

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     catacataacctacatattt 26
             ||||||||||||||||||||
Sbjct: 26113 catacataacctacatattt 26094
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>gb|U36616.1|HSYRRMC01 Human Y-chromosome RNA recognition motif protein (YRRM) gene, exon
           2, subclone 7S2
          Length = 418

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   catacataacctacatattt 26
           ||||||||||||||||||||
Sbjct: 321 catacataacctacatattt 302
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>gb|AC124779.4| Mus musculus BAC clone RP23-100O18 from chromosome 6, complete sequence
          Length = 197482

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 29     ataaacaactgaggtcctc 47
              |||||||||||||||||||
Sbjct: 102233 ataaacaactgaggtcctc 102251
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>gb|AC138453.8| Medicago truncatula clone mth2-20m14, complete sequence
          Length = 144639

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 20     catatttctataaacaact 38
              |||||||||||||||||||
Sbjct: 120509 catatttctataaacaact 120527
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>emb|AL138957.13| Human DNA sequence from clone RP11-203P2 on chromosome 13 Contains two
              novel genes, complete sequence
          Length = 173315

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 18     tacatatttctataaacaa 36
              |||||||||||||||||||
Sbjct: 156488 tacatatttctataaacaa 156506
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>emb|AL096771.11|HSJ238D15 Human DNA sequence from clone RP1-238D15 on chromosome 6q12-14.3
             Contains 3' end of COL12A1 gene  for collagen, type XII,
             alpha 1, complete sequence
          Length = 112292

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    aacctacatatttctataa 32
             |||||||||||||||||||
Sbjct: 81832 aacctacatatttctataa 81850
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>gb|AC158963.3| Mus musculus chromosome 1, clone RP23-321A12, complete sequence
          Length = 203604

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    aactgaggtcctctggata 53
             |||||||||||||||||||
Sbjct: 51175 aactgaggtcctctggata 51193
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>gb|AC078985.14| Homo sapiens 3q BAC RP11-82C9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 180982

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 36     actgaggtcctctggatacacac 58
              ||||||||||||||||| |||||
Sbjct: 134651 actgaggtcctctggattcacac 134629
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>gb|AC091576.11| Homo sapiens chromosome 18, clone RP11-711I10, complete sequence
          Length = 162600

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                        
Query: 18    tacatatttctataaacaactgaggtc 44
             ||||||||| |||||||||||||||||
Sbjct: 78805 tacatattt-tataaacaactgaggtc 78830
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>gb|AC153370.13| Mus musculus 10 BAC RP23-281M13 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 213550

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    tatttctataaacaactga 40
             |||||||||||||||||||
Sbjct: 69142 tatttctataaacaactga 69160
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>gb|AC091843.3| Homo sapiens chromosome 5 clone CTD-2185O23, complete sequence
          Length = 177056

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                        
Query: 18    tacatatttctataaacaactgaggtc 44
             ||||||||| |||||||||||||||||
Sbjct: 26277 tacatattt-tataaacaactgaggtc 26302
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>dbj|AK143943.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:F530003M03 product:homeo box A1, full
            insert sequence
          Length = 2039

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 15   acctacatatttctataaa 33
            |||||||||||||||||||
Sbjct: 1465 acctacatatttctataaa 1447
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>dbj|AK083575.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:D030047C07 product:homeo box A1,
            full insert sequence
          Length = 2475

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 15   acctacatatttctataaa 33
            |||||||||||||||||||
Sbjct: 1674 acctacatatttctataaa 1656
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>gb|AC158599.7| Mus musculus 10 BAC RP23-122O12 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 191825

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    tatttctataaacaactga 40
             |||||||||||||||||||
Sbjct: 34646 tatttctataaacaactga 34628
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>gb|AC015583.34| Mus musculus chromosome 6, clone RP23-329P9, complete sequence
          Length = 201379

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 15     acctacatatttctataaa 33
              |||||||||||||||||||
Sbjct: 157199 acctacatatttctataaa 157181
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>gb|AC131084.13| Mus musculus chromosome 1, clone RP23-450D2, complete sequence
          Length = 208140

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    aactgaggtcctctggata 53
             |||||||||||||||||||
Sbjct: 91977 aactgaggtcctctggata 91995
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>ref|NM_010449.2| Mus musculus homeo box A1 (Hoxa1), mRNA
          Length = 2475

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 15   acctacatatttctataaa 33
            |||||||||||||||||||
Sbjct: 1674 acctacatatttctataaa 1656
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>gb|AC091106.17| Mus musculus chromosome 6, clone RP23-103L13, complete sequence
          Length = 192344

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    acctacatatttctataaa 33
             |||||||||||||||||||
Sbjct: 32813 acctacatatttctataaa 32795
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>gb|M22115.1|MUSERA1A Mouse ERA-1-993 mRNA, complete cds, and alternate ERA-1-339 mRNA,
            complete cds
          Length = 2216

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 15   acctacatatttctataaa 33
            |||||||||||||||||||
Sbjct: 1643 acctacatatttctataaa 1625


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 606,875
Number of Sequences: 3902068
Number of extensions: 606875
Number of successful extensions: 46401
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 46314
Number of HSP's gapped (non-prelim): 89
length of query: 74
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 53
effective length of database: 17,151,101,840
effective search space: 909008397520
effective search space used: 909008397520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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