ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl19d02 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 94.7 bits (234), Expect = 9e-20 Identities = 45/60 (75%), Positives = 49/60 (81%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 F +L IE +VV MN DP+LKNR GPAKFPYMLLYPNTSDH G A GLTA+GIPNSISI Sbjct: 803 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 88.6 bits (218), Expect = 6e-18 Identities = 43/60 (71%), Positives = 46/60 (76%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 FGA+L IE +VVAMN DP KNR GP FPY LLYPNTSD G A GL+ARGIPNSISI Sbjct: 811 FGARLTEIESRVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 85.5 bits (210), Expect = 5e-17 Identities = 42/60 (70%), Positives = 47/60 (78%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 F +L IE +VV MN D LKNR GPA+FPYMLLYPNTSD TG A G+TA+GIPNSISI Sbjct: 807 FSDRLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 85.1 bits (209), Expect = 7e-17 Identities = 40/60 (66%), Positives = 47/60 (78%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 F +L IE +V+ MN DP LKNR GPA FPY L++PNTSD+ G AEG+TARGIPNSISI Sbjct: 804 FSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 75.5 bits (184), Expect = 5e-14 Identities = 38/61 (62%), Positives = 45/61 (73%), Gaps = 1/61 (1%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQ-AEGLTARGIPNSIS 262 FG++L IE ++ MN + LKNR GP K PYMLLYPNTSD T + +GLTA GIPNSIS Sbjct: 817 FGSRLVDIENRIKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSIS 876 Query: 261 I 259 I Sbjct: 877 I 877
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 69.7 bits (169), Expect = 3e-12 Identities = 36/60 (60%), Positives = 42/60 (70%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 FG KLE IEK+++ N D L+NR GPAK PY LLYP++ EGLT RGIPNSISI Sbjct: 800 FGKKLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSE------EGLTFRGIPNSISI 853
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 68.6 bits (166), Expect = 7e-12 Identities = 35/60 (58%), Positives = 41/60 (68%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 FG+KL GIE ++ A NSDP L+NRTGP + PY LL H EGLT +GIPNSISI Sbjct: 811 FGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLL------HRSSEEGLTFKGIPNSISI 864
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 64.7 bits (156), Expect = 1e-10 Identities = 33/60 (55%), Positives = 40/60 (66%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 FG KL IE+++ N+D L+NR GP K PY LLYP++ EGLT RGIPNSISI Sbjct: 813 FGKKLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYPSSE------EGLTCRGIPNSISI 866
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 63.9 bits (154), Expect = 2e-10 Identities = 33/60 (55%), Positives = 41/60 (68%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 FG KL IEK++ N+D +L+NR GP + PY LLYP++ EGLT RGIPNSISI Sbjct: 808 FGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSK------EGLTFRGIPNSISI 861
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 63.9 bits (154), Expect = 2e-10 Identities = 32/60 (53%), Positives = 39/60 (65%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 FG KL+ IE++++ N D L+NR GP K PY +L P D EGLT RGIPNSISI Sbjct: 808 FGQKLKEIEEKIMGRNKDSSLRNRNGPVKMPYTVLLPTCED-----EGLTFRGIPNSISI 862
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 62.8 bits (151), Expect = 4e-10 Identities = 32/60 (53%), Positives = 40/60 (66%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 FG KL+ IE+++ N+D L NR GP + PY LL+PN +EGLT RGIPNSISI Sbjct: 813 FGNKLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHPN-------SEGLTCRGIPNSISI 865
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 62.8 bits (151), Expect = 4e-10 Identities = 34/61 (55%), Positives = 43/61 (70%), Gaps = 1/61 (1%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLK-NRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 262 FG KL+ IE+++V N+DP L+ NR GP + PY LLYP++ EGLT RGIPNSIS Sbjct: 785 FGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSE------EGLTFRGIPNSIS 838 Query: 261 I 259 I Sbjct: 839 I 839
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 59.7 bits (143), Expect = 3e-09 Identities = 30/60 (50%), Positives = 37/60 (61%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 FG KL IEKQ++ N D L NR+GP PY LL+P + GLT +GIPNS+SI Sbjct: 808 FGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 861
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 59.7 bits (143), Expect = 3e-09 Identities = 31/54 (57%), Positives = 37/54 (68%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGI 277 FG KL IEK++V N+D L+NRTGPAK PY LLYP++ EGLT RGI Sbjct: 694 FGKKLAEIEKKLVQKNNDETLRNRTGPAKMPYTLLYPSSE------EGLTFRGI 741
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 59.3 bits (142), Expect = 4e-09 Identities = 31/60 (51%), Positives = 39/60 (65%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 FG KL IE ++ N+DP L +R GP + PY LL+P++ EGLT RGIPNSISI Sbjct: 811 FGNKLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSK------EGLTFRGIPNSISI 864
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 58.9 bits (141), Expect = 5e-09 Identities = 29/60 (48%), Positives = 37/60 (61%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 FG L IE +++ MNS KNR+GP PY LL+P + EGLT +GIPNS+SI Sbjct: 806 FGKMLSDIENRIMIMNSHKSWKNRSGPVNVPYTLLFPTSE------EGLTGKGIPNSVSI 859
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 58.9 bits (141), Expect = 5e-09 Identities = 30/60 (50%), Positives = 38/60 (63%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 FG K++ IEK + N D LKNRTG K PY LL+P++ G+T RGIPNS+SI Sbjct: 806 FGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEG------GVTGRGIPNSVSI 859
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 58.5 bits (140), Expect = 7e-09 Identities = 31/60 (51%), Positives = 39/60 (65%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 FG KL IE ++ N+D +L+NR GP + PY LL P++ EGLT RGIPNSISI Sbjct: 804 FGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSK------EGLTFRGIPNSISI 857
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 58.2 bits (139), Expect = 9e-09 Identities = 30/60 (50%), Positives = 37/60 (61%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 FG KL IEKQ++ N + L NRTGP PY LL+P + GLT +GIPNS+SI Sbjct: 807 FGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 860
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 45.4 bits (106), Expect = 6e-05 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 F A + E+++ N+DP +NR G PY L+ P++ G+T RG+PNS++I Sbjct: 846 FAADVRRAEEEIERRNADPSRRNRCGAGVLPYELMAPSS------GPGITCRGVPNSVTI 899
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 43.9 bits (102), Expect = 2e-04 Identities = 25/60 (41%), Positives = 32/60 (53%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 F A+L+ IE + N D +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 871 FAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSD------SGVTGMGIPNSTSI 924
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 43.5 bits (101), Expect = 2e-04 Identities = 25/60 (41%), Positives = 33/60 (55%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 F +L+ E + N++P+ KNR G PY LL P + G+T RGIPNSISI Sbjct: 843 FSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSE------PGVTGRGIPNSISI 896
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 42.7 bits (99), Expect = 4e-04 Identities = 25/60 (41%), Positives = 32/60 (53%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 F A+L+ IE + N D +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 888 FTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSD------AGVTGMGIPNSTSI 941
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 42.7 bits (99), Expect = 4e-04 Identities = 24/60 (40%), Positives = 32/60 (53%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 F A + E+ + N+D KNR G PY LL P++ G+T RG+PNSISI Sbjct: 865 FAADVRRAEETIERRNADHGRKNRCGAGVLPYELLAPSS------PPGVTCRGVPNSISI 918
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 42.0 bits (97), Expect = 7e-04 Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 4/57 (7%) Frame = -1 Query: 417 IEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTG----QAEGLTARGIPNSISI 259 I +QV N+DP KNR G PY+LL P+ D T + + GIPNSISI Sbjct: 880 IVEQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 40.0 bits (92), Expect = 0.003 Identities = 24/60 (40%), Positives = 32/60 (53%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 F K+ I +QV N D +NR G PY+LL P + + A+ + GIPNSISI Sbjct: 874 FQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRP-LNGNPMDAKTVMEMGIPNSISI 932
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 37.4 bits (85), Expect = 0.016 Identities = 25/60 (41%), Positives = 32/60 (53%) Frame = -1 Query: 438 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 259 F KL+ +E + N + LKNR G Y LL P TS+H G+T G+P SISI Sbjct: 843 FKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKP-TSEH-----GVTGMGVPYSISI 896
>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 582 Score = 31.2 bits (69), Expect = 1.2 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = +1 Query: 238 TTDVLRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 357 T DVL DG VR G +G+SR+V V EQH ELG Sbjct: 438 TADVLGEDGKPVRLTMGSYGIGVSRLV-AVVAEQHHDELG 476
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -3 Query: 361 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 272 A P H A P L H +G HRQGHPE Sbjct: 231 APDAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -3 Query: 361 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 272 A P H A P L H +G HRQGHPE Sbjct: 231 APNAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 29.3 bits (64), Expect = 4.4 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Frame = -3 Query: 385 PAAQEPHRAGQVPIHAALPKHLRPHGTGRG----AHRQGHPEQHIHL 257 P+ PHR +P H P+H PH H Q HP H H+ Sbjct: 380 PSPHTPHRPHGLPQHPQRPQHPAPHPQQHSQLQPPHSQ-HPPPHQHI 425
>SMUG1_RAT (Q811Q1) Single-strand selective monofunctional uracil-DNA| glycosylase (EC 3.2.2.-) Length = 278 Score = 29.3 bits (64), Expect = 4.4 Identities = 19/72 (26%), Positives = 33/72 (45%) Frame = -2 Query: 218 AILACLHRS*LVCVCDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQKKSLV 39 A L HR L+ +CD LCR + L+G+R + G + R + + + Sbjct: 180 ADLPAKHREQLLSICDAALCRQVQ-----------LLGVRLVVGVGRLAEQRARRALAGL 228 Query: 38 LPNNEVDGVMFP 3 P +V+G++ P Sbjct: 229 TPEVQVEGLLHP 240
>RPM1_CAEEL (Q17551) Ubiquitin ligase protein rpm-1 (EC 6.3.2.-)| (Pam/highwire/rpm-1 protein) (Regulator of presynaptic morphology protein 1) (Synapse defective protein 3) Length = 3766 Score = 28.5 bits (62), Expect = 7.6 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +2 Query: 113 DPSCTHPYCLNYSCTGTILCHTHTQASSGVSKQ 211 D +CTH C+NY+ T + HT G+ + Sbjct: 3463 DGTCTHEDCVNYAKTACQVMHTCNHFCGGIRNE 3495
>ALR1_SALTY (P0A1A3) Alanine racemase, biosynthetic (EC 5.1.1.1)| Length = 359 Score = 28.1 bits (61), Expect = 9.9 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +1 Query: 250 LRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 357 L S AVRD GEP+G GG WV + LG Sbjct: 237 LTSSLIAVRDHKAGEPVG----YGGTWVSERDTRLG 268
>ALR1_SALTI (P0A1A4) Alanine racemase, biosynthetic (EC 5.1.1.1)| Length = 359 Score = 28.1 bits (61), Expect = 9.9 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +1 Query: 250 LRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 357 L S AVRD GEP+G GG WV + LG Sbjct: 237 LTSSLIAVRDHKAGEPVG----YGGTWVSERDTRLG 268 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,439,777 Number of Sequences: 219361 Number of extensions: 1361614 Number of successful extensions: 3779 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 3590 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3741 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
