ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl19c12 |
|---|---|
| Clone Library Name | barley_pub |
>PYR1_MESAU (P08955) CAD protein [Includes: Glutamine-dependent| carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC 3.5.2.3)] Length = 2225 Score = 27.7 bits (60), Expect(2) = 0.39 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -2 Query: 384 RVALGSPAPARRTSVVSGTGIFNRSL 307 ++ALG P P R SV GT F SL Sbjct: 708 KLALGIPLPELRNSVTGGTAAFEPSL 733 Score = 22.7 bits (47), Expect(2) = 0.39 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -3 Query: 317 IEVCVSK*WQGDLAMRSRCSTPRGGCLSSKRACLG 213 ++ CV K + DL+ R ST G C+ S +G Sbjct: 733 LDYCVVKIPRWDLSKFLRVSTKIGSCMKSVGEVMG 767
>PYR1_HUMAN (P27708) CAD protein [Includes: Glutamine-dependent| carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC 3.5.2.3)] Length = 2225 Score = 26.6 bits (57), Expect(2) = 0.65 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -2 Query: 384 RVALGSPAPARRTSVVSGTGIFNRSL 307 ++ALG P P R SV GT F S+ Sbjct: 708 KLALGIPLPELRNSVTGGTAAFEPSV 733 Score = 23.1 bits (48), Expect(2) = 0.65 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -3 Query: 317 IEVCVSK*WQGDLAMRSRCSTPRGGCLSSKRACLG 213 ++ CV K + DL+ R ST G C+ S +G Sbjct: 733 VDYCVVKIPRWDLSKFLRVSTKIGSCMKSVGEVMG 767
>FLNA_MOUSE (Q8BTM8) Filamin-A (Alpha-filamin) (Filamin-1) (Endothelial| actin-binding protein) (Actin-binding protein 280) (ABP-280) (Nonmuscle filamin) Length = 2646 Score = 29.3 bits (64), Expect = 2.4 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Frame = +2 Query: 29 HSPENP-NTSSLINTSSLINTSSQSQ---PWYHLP*GSKSTTFPEEAKVNWFCTPVSTFQ 196 H P +P ++L + T +SQ P Y+ P GS+ T PE V V++ + Sbjct: 1729 HVPNSPFQVTALAGDQPTVQTPLRSQQLAPQYNYPQGSQQTWIPERPMVGVNGLDVTSLR 1788 Query: 197 PDLLHLPST 223 P L +P T Sbjct: 1789 PFDLVIPFT 1797
>PAX6_COTJA (P47238) Paired box protein Pax-6 (Pax-QNR)| Length = 416 Score = 29.3 bits (64), Expect = 2.4 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +2 Query: 185 STFQPDLLHLPSTPA*---RTDILLLELNTCCALPNLPAIICSRRLRLNMPVPDTT 343 S +QP + P+TP RTD L NT ALP +P+ + L + PVP T Sbjct: 294 SVYQP--IPQPTTPGSMLGRTDTALT--NTYSALPPMPSFTMANNLPMQPPVPSQT 345
>PAX6_CHICK (P47237) Paired box protein Pax-6 (Fragment)| Length = 216 Score = 29.3 bits (64), Expect = 2.4 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +2 Query: 185 STFQPDLLHLPSTPA*---RTDILLLELNTCCALPNLPAIICSRRLRLNMPVPDTT 343 S +QP + P+TP RTD L NT ALP +P+ + L + PVP T Sbjct: 94 SVYQP--IPQPTTPGSMLGRTDTALT--NTYSALPPMPSFTMANNLPMQPPVPSQT 145
>MYLK2_RAT (P20689) Myosin light chain kinase 2, skeletal/cardiac muscle (EC| 2.7.11.18) (MLCK2) Length = 609 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +2 Query: 278 PNLPAII-CSRRLRLNMPVPDTTEVLLAGAGE 370 P+ PAII CS + P+ +TTE++ AG E Sbjct: 166 PSCPAIISCSEKTLAMKPLSETTELIFAGVSE 197
>MAP1B_MOUSE (P14873) Microtubule-associated protein 1B (MAP 1B) (MAP1.2)| (MAP1(X)) [Contains: MAP1 light chain LC1] Length = 2464 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = +2 Query: 32 SPENPNTSSLINTSSLINTSSQSQPWYHLP*GSKSTTFPEEAKVNWFCTPVS 187 SPE T +++ S + S+ P+Y P KS+ P E N PVS Sbjct: 1307 SPEE-KTLEVVSPSQSVTGSAGHTPYYQSPTDEKSSHLPTEVSENAQAVPVS 1357
>Y2295_CLOAB (Q97GS1) UPF0082 protein CAC2295| Length = 246 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Frame = -1 Query: 184 NRGAEPVYFCFLREGGTFASSGKVVPWLGLR---ACVDKRTCVDK 59 NR A V +CF R GG +SG V W+ R ++K +D+ Sbjct: 107 NRSASDVRYCFDRNGGNLGASG-CVAWMFQRKGQIVIEKNDSIDE 150
>MAP1B_RAT (P15205) Microtubule-associated protein 1B (MAP 1B) (Neuraxin)| [Contains: MAP1 light chain LC1] Length = 2459 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = +2 Query: 32 SPENPNTSSLINTSSLINTSSQSQPWYHLP*GSKSTTFPEEAKVNWFCTPVS 187 SPE T +++ S + S+ P+Y P KS+ P E N PVS Sbjct: 1304 SPEE-KTLEVVSPSQSVTGSAGHTPYYQSPTDEKSSHLPTEVTENAQAVPVS 1354
>YICI_ECOLI (P31434) Putative family 31 glucosidase yicI| Length = 772 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -2 Query: 159 FASSGKVVLLLPQGRWYHGW 100 F +G V LP+GRW H W Sbjct: 620 FTEAGDVQFYLPEGRWTHLW 639
>PAX6_RAT (P63016) Paired box protein Pax-6 (Oculorhombin)| Length = 422 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +2 Query: 176 TPVSTFQPDLLHLPSTPA*RTDILLLELNTCCALPNLPAIICSRRLRLNMPVPDTT 343 TPVS+F + RTD L NT ALP +P+ + L + PVP T Sbjct: 304 TPVSSFTSGSM------LGRTDTALT--NTYSALPPMPSFTMANNLPMQPPVPSQT 351
>PAX6_MOUSE (P63015) Paired box protein Pax-6 (Oculorhombin)| Length = 422 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +2 Query: 176 TPVSTFQPDLLHLPSTPA*RTDILLLELNTCCALPNLPAIICSRRLRLNMPVPDTT 343 TPVS+F + RTD L NT ALP +P+ + L + PVP T Sbjct: 304 TPVSSFTSGSM------LGRTDTALT--NTYSALPPMPSFTMANNLPMQPPVPSQT 351
>PAX6_HUMAN (P26367) Paired box protein Pax-6 (Oculorhombin) (Aniridia type II| protein) Length = 422 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +2 Query: 176 TPVSTFQPDLLHLPSTPA*RTDILLLELNTCCALPNLPAIICSRRLRLNMPVPDTT 343 TPVS+F + RTD L NT ALP +P+ + L + PVP T Sbjct: 304 TPVSSFTSGSM------LGRTDTALT--NTYSALPPMPSFTMANNLPMQPPVPSQT 351
>SYMM_YEAST (P22438) Methionyl-tRNA synthetase, mitochondrial (EC 6.1.1.10)| (Methionine--tRNA ligase) (MetRS) Length = 575 Score = 27.7 bits (60), Expect = 6.9 Identities = 27/101 (26%), Positives = 42/101 (41%) Frame = +2 Query: 35 PENPNTSSLINTSSLINTSSQSQPWYHLP*GSKSTTFPEEAKVNWFCTPVSTFQPDLLHL 214 PE+ N +NT S+++ Y S++ F + N PD + Sbjct: 146 PESKVIKDPKNDGKYLNTESKNEVVYQ----SETNYFFRLSLFNKKIVDHIRKNPDFIF- 200 Query: 215 PSTPA*RTDILLLELNTCCALPNLPAIICSRRLRLNMPVPD 337 PA + D +L EL T LP+L S RL+ +P P+ Sbjct: 201 ---PASKRDQILKELETGGTLPDLSISRPSARLKWGIPTPN 238
>YEA7_YEAST (P40002) Hypothetical 72.5 kDa protein in GCN4-WBP1 intergenic| region Length = 666 Score = 27.7 bits (60), Expect = 6.9 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Frame = +2 Query: 35 PENPNTSSLINTSSLINTSSQSQPWYHLP*GSKSTTFPEEAK----VNWFCTPVSTFQPD 202 P NP T++ N + +TSS P+Y P S+S + A PVS+ QP Sbjct: 429 PPNPVTNASTNENQGYSTSSTQHPYYGHPTESQSASAAAGATGTPGTAENVLPVSSMQP- 487 Query: 203 LLH 211 LLH Sbjct: 488 LLH 490
>VIBE_VIBCH (O07899) Vibriobactin-specific 2,3-dihydroxybenzoate-AMP ligase (EC| 6.3.2.-) (Dihydroxybenzoic acid-activating enzyme) Length = 543 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +1 Query: 25 LS*PREPQHKFSYQHKFSYQHKLAVPAMVPP 117 LS PQH F K QHK+ V A+VPP Sbjct: 259 LSQDASPQHAF----KLIEQHKITVTALVPP 285 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,992,229 Number of Sequences: 219361 Number of extensions: 1384001 Number of successful extensions: 3558 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3427 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3556 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
