ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl19c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475205.1| Oryza sativa (japonica cultivar-group), predic... 68 2e-08
2gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome... 68 2e-08
3gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome... 68 2e-08
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
5dbj|AK102894.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
6gb|AC149575.1| Populus trichocarpa clone Pop1-41G18, complete se... 40 5.2
7ref|XM_535547.2| PREDICTED: Canis familiaris similar to zinc fin... 40 5.2
8emb|BX538136.1|HSM806337 Homo sapiens genomic DNA; cDNA DKFZp686... 40 5.2
9gb|AC114321.2| Homo sapiens chromosome 5 clone RP11-710L15, comp... 40 5.2
10gb|AC008499.8| Homo sapiens chromosome 5 clone CTC-438O3, comple... 40 5.2
11dbj|AP000763.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.2
12gb|AC165368.5| Mus musculus BAC clone RP23-28L24 from chromosome... 40 5.2
13emb|AL663053.12| Mouse DNA sequence from clone RP23-436M12 on ch... 40 5.2 
>ref|XM_475205.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2523

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 88/106 (83%)
 Strand = Plus / Minus

                                                                        
Query: 231  agaggacagacatcctcctcttggagttgaacacctgctgcgcattgccaaatctccctg 290
            ||||||||||| ||||||| |||| |||||||||  |||||||||| || | | || | |
Sbjct: 2521 agaggacagacttcctcctgttggtgttgaacacgcgctgcgcattccctattttcgccg 2462

                                                          
Query: 291  ccatcatttgctcacgcagacttcgattaaatatgccagtaccaga 336
            ||||||||| ||| ||||||  | |||| || ||||||||||||||
Sbjct: 2461 ccatcattttctcgcgcagagctggattgaagatgccagtaccaga 2416
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>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01,
             complete sequence
          Length = 146303

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 88/106 (83%)
 Strand = Plus / Minus

                                                                         
Query: 231   agaggacagacatcctcctcttggagttgaacacctgctgcgcattgccaaatctccctg 290
             ||||||||||| ||||||| |||| |||||||||  |||||||||| || | | || | |
Sbjct: 23056 agaggacagacttcctcctgttggtgttgaacacgcgctgcgcattccctattttcgccg 22997

                                                           
Query: 291   ccatcatttgctcacgcagacttcgattaaatatgccagtaccaga 336
             ||||||||| ||| ||||||  | |||| || ||||||||||||||
Sbjct: 22996 ccatcattttctcgcgcagagctggattgaagatgccagtaccaga 22951
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>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21,
              complete sequence
          Length = 151267

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 88/106 (83%)
 Strand = Plus / Minus

                                                                          
Query: 231    agaggacagacatcctcctcttggagttgaacacctgctgcgcattgccaaatctccctg 290
              ||||||||||| ||||||| |||| |||||||||  |||||||||| || | | || | |
Sbjct: 140879 agaggacagacttcctcctgttggtgttgaacacgcgctgcgcattccctattttcgccg 140820

                                                            
Query: 291    ccatcatttgctcacgcagacttcgattaaatatgccagtaccaga 336
              ||||||||| ||| ||||||  | |||| || ||||||||||||||
Sbjct: 140819 ccatcattttctcgcgcagagctggattgaagatgccagtaccaga 140774
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 88/106 (83%)
 Strand = Plus / Minus

                                                                            
Query: 231      agaggacagacatcctcctcttggagttgaacacctgctgcgcattgccaaatctccctg 290
                ||||||||||| ||||||| |||| |||||||||  |||||||||| || | | || | |
Sbjct: 19218981 agaggacagacttcctcctgttggtgttgaacacgcgctgcgcattccctattttcgccg 19218922

                                                              
Query: 291      ccatcatttgctcacgcagacttcgattaaatatgccagtaccaga 336
                ||||||||| ||| ||||||  | |||| || ||||||||||||||
Sbjct: 19218921 ccatcattttctcgcgcagagctggattgaagatgccagtaccaga 19218876
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>dbj|AK102894.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112N14, full
            insert sequence
          Length = 2886

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 88/106 (83%)
 Strand = Plus / Minus

                                                                        
Query: 231  agaggacagacatcctcctcttggagttgaacacctgctgcgcattgccaaatctccctg 290
            ||||||||||| ||||||| |||| |||||||||  |||||||||| || | | || | |
Sbjct: 2646 agaggacagacttcctcctgttggtgttgaacacgcgctgcgcattccctattttcgccg 2587

                                                          
Query: 291  ccatcatttgctcacgcagacttcgattaaatatgccagtaccaga 336
            ||||||||| ||| ||||||  | |||| || ||||||||||||||
Sbjct: 2586 ccatcattttctcgcgcagagctggattgaagatgccagtaccaga 2541
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>gb|AC149575.1| Populus trichocarpa clone Pop1-41G18, complete sequence
          Length = 111678

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   atcttcttcacctcccaagc 220
             ||||||||||||||||||||
Sbjct: 15681 atcttcttcacctcccaagc 15700
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>ref|XM_535547.2| PREDICTED: Canis familiaris similar to zinc finger protein 291
           (LOC478373), mRNA
          Length = 4262

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 201 atcttcttcacctcccaagc 220
           ||||||||||||||||||||
Sbjct: 583 atcttcttcacctcccaagc 564
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>emb|BX538136.1|HSM806337 Homo sapiens genomic DNA; cDNA DKFZp686H13117 (from clone
            DKFZp686H13117)
          Length = 3884

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   tatttatcatagcccagaga 41
            ||||||||||||||||||||
Sbjct: 1639 tatttatcatagcccagaga 1658
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>gb|AC114321.2| Homo sapiens chromosome 5 clone RP11-710L15, complete sequence
          Length = 158109

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     tatttatcatagcccagaga 41
              ||||||||||||||||||||
Sbjct: 156685 tatttatcatagcccagaga 156666
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>gb|AC008499.8| Homo sapiens chromosome 5 clone CTC-438O3, complete sequence
          Length = 244525

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    tatttatcatagcccagaga 41
             ||||||||||||||||||||
Sbjct: 54329 tatttatcatagcccagaga 54310
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>dbj|AP000763.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-809N8, complete
              sequence
          Length = 189920

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    caccttccctgaggaagcaa 158
              ||||||||||||||||||||
Sbjct: 104140 caccttccctgaggaagcaa 104159



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    caccttccctgaggaagcaa 132
              ||||||||||||||||||||
Sbjct: 104140 caccttccctgaggaagcaa 104159
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>gb|AC165368.5| Mus musculus BAC clone RP23-28L24 from chromosome 1, complete sequence
          Length = 216981

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     tcccagccatggtaccacct 117
              ||||||||||||||||||||
Sbjct: 200953 tcccagccatggtaccacct 200972
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>emb|AL663053.12| Mouse DNA sequence from clone RP23-436M12 on chromosome 11, complete
             sequence
          Length = 203593

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   cctcctcttggagttgaaca 263
             ||||||||||||||||||||
Sbjct: 57861 cctcctcttggagttgaaca 57880


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,867,272
Number of Sequences: 3902068
Number of extensions: 3867272
Number of successful extensions: 70261
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70230
Number of HSP's gapped (non-prelim): 31
length of query: 391
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 369
effective length of database: 17,147,199,772
effective search space: 6327316715868
effective search space used: 6327316715868
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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