ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl19c11 |
|---|---|
| Clone Library Name | barley_pub |
>NOX3_RAT (Q672K1) NADPH oxidase 3 (EC 1.6.3.-)| Length = 568 Score = 60.8 bits (146), Expect = 7e-10 Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 2/77 (2%) Frame = -3 Query: 339 HAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCGEPVLVAQLRQLSADF 160 H + +D+++G KT + RPNW FK+IA NH + +GVF+CG + L+++ + Sbjct: 492 HWDESLDVITGLKQKTFYGRPNWNEEFKQIAYNHPSSSIGVFFCGPKAMSKTLQKMCRLY 551 Query: 159 TPN--TNTKFEFHKENF 115 + + F ++KENF Sbjct: 552 SSSDPRGVHFYYNKENF 568
>NOX3_HUMAN (Q9HBY0) NADPH oxidase 3 (EC 1.6.3.-) (gp91phox homolog 3) (GP91-3)| (Mitogenic oxidase 2) Length = 568 Score = 58.9 bits (141), Expect = 3e-09 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 5/94 (5%) Frame = -3 Query: 381 DARSALIVMLQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCGE 202 D AL + L H + D+++G KT + RPNW + FK+IA NH + +GVF+CG Sbjct: 482 DENQALHIAL----HWDENTDVITGLKQKTFYGRPNWNNEFKQIAYNHPSSSIGVFFCGP 537 Query: 201 PVLVAQLRQL-----SADFTPNTNTKFEFHKENF 115 L L+++ SAD F ++KE+F Sbjct: 538 KALSRTLQKMCHLYSSAD---PRGVHFYYNKESF 568
>NOX3_MOUSE (Q672J9) NADPH oxidase 3 (EC 1.6.3.-)| Length = 568 Score = 58.2 bits (139), Expect = 5e-09 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Frame = -3 Query: 339 HAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCGEPVLVAQLRQLSADF 160 H + +D+++G K + RPNW FK+IA NH + +GVF+CG + L+++ + Sbjct: 492 HWDESLDVITGLKQKAFYGRPNWNDEFKQIAYNHPSSSIGVFFCGSKAMSKTLQKMCRLY 551 Query: 159 T--PNTNTKFEFHKENF 115 + F ++KENF Sbjct: 552 SSVDPRGVHFYYNKENF 568
>CY24B_HUMAN (P04839) Cytochrome b-245 heavy chain (p22 phagocyte B-cytochrome)| (Neutrophil cytochrome b 91 kDa polypeptide) (CGD91-phox) (gp91-phox) (gp91-1) (Heme-binding membrane glycoprotein gp91phox) (Cytochrome b(558) beta chain) (Cytochrome b558 be Length = 569 Score = 58.2 bits (139), Expect = 5e-09 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Frame = -3 Query: 339 HAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCGEPVLVAQL--RQLSA 166 H + D+++G KT + RPNW + FK IA H N R+GVF CG L L + +S Sbjct: 493 HHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGPEALAETLSKQSISN 552 Query: 165 DFTPNTNTKFEFHKENF 115 + F F+KENF Sbjct: 553 SESGPRGVHFIFNKENF 569
>NOX1_RAT (Q9WV87) NADPH oxidase homolog 1 (NOX-1) (NOH-1) (NADH/NADPH| mitogenic oxidase subunit P65-MOX) (Mitogenic oxidase 1) (MOX1) Length = 563 Score = 57.0 bits (136), Expect = 1e-08 Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Frame = -3 Query: 330 KGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCGEPVLVAQLRQLSADFT-- 157 + D+L+G KT F RP W + F RIA H VGVF CG P L LR+ ++ Sbjct: 490 RATDVLTGLKQKTSFGRPMWDNEFSRIATAHPKSVVGVFLCGPPTLAKSLRKCCRRYSSL 549 Query: 156 PNTNTKFEFHKENF 115 +F F+KE F Sbjct: 550 DPRKVQFYFNKETF 563
>CY24B_PIG (P52649) Cytochrome b-245 heavy chain (p22 phagocyte B-cytochrome)| (Neutrophil cytochrome b 91 kDa polypeptide) (CGD91-phox) (gp91-phox) (gp91-1) (Heme-binding membrane glycoprotein gp91phox) (Cytochrome b(558) beta chain) (Cytochrome b558 beta Length = 484 Score = 56.6 bits (135), Expect = 1e-08 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 3/78 (3%) Frame = -3 Query: 339 HAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCGEPVLVAQLRQ---LS 169 H + D+++G KT + RPNW + FK IA H R+GVF CG L L + + Sbjct: 408 HHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPTTRIGVFLCGPEALAETLNKQCISN 467 Query: 168 ADFTPNTNTKFEFHKENF 115 +D +P F F+KENF Sbjct: 468 SDSSPR-GVHFIFNKENF 484
>CY24B_BOVIN (O46522) Cytochrome b-245 heavy chain (p22 phagocyte B-cytochrome)| (Neutrophil cytochrome b 91 kDa polypeptide) (CGD91-phox) (gp91-phox) (gp91-1) (Heme-binding membrane glycoprotein gp91phox) (Cytochrome b(558) beta chain) (Cytochrome b558 be Length = 570 Score = 56.2 bits (134), Expect = 2e-08 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -3 Query: 339 HAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCGEPVLVAQLRQ--LSA 166 H + D+++G KT + RPNW + FK I H N R+GVF CG L L + +S Sbjct: 494 HHDEEKDVITGLKQKTLYGRPNWDNEFKTIGSQHPNTRIGVFLCGPEALADTLNKQCISN 553 Query: 165 DFTPNTNTKFEFHKENF 115 + F F+KENF Sbjct: 554 SDSGPRGVHFIFNKENF 570
>CY24B_BISBI (Q95L74) Cytochrome b-245 heavy chain (p22 phagocyte B-cytochrome)| (Neutrophil cytochrome b 91 kDa polypeptide) (CGD91-phox) (gp91-phox) (gp91-1) (Heme-binding membrane glycoprotein gp91phox) (Cytochrome b(558) beta chain) (Cytochrome b558 be Length = 570 Score = 56.2 bits (134), Expect = 2e-08 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -3 Query: 339 HAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCGEPVLVAQLRQ--LSA 166 H + D+++G KT + RPNW + FK I H N R+GVF CG L L + +S Sbjct: 494 HHDEEKDVITGLKQKTLYGRPNWDNEFKTIGSQHPNTRIGVFLCGPEALADTLNKQCISN 553 Query: 165 DFTPNTNTKFEFHKENF 115 + F F+KENF Sbjct: 554 SDSGPRGVHFIFNKENF 570
>CY24B_MOUSE (Q61093) Cytochrome b-245 heavy chain (p22 phagocyte B-cytochrome)| (Neutrophil cytochrome b 91 kDa polypeptide) (CGD91-phox) (gp91-phox) (gp91-1) (Heme-binding membrane glycoprotein gp91phox) (Cytochrome b(558) beta chain) (Cytochrome b558 be Length = 570 Score = 55.8 bits (133), Expect = 2e-08 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -3 Query: 339 HAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCGEPVLVAQL--RQLSA 166 H + D+++G KT + RPNW + FK IA H N +GVF CG L L + +S Sbjct: 494 HHDEEKDVITGLKQKTLYGRPNWDNEFKTIASEHPNTTIGVFLCGPEALAETLSKQSISN 553 Query: 165 DFTPNTNTKFEFHKENF 115 + F F+KENF Sbjct: 554 SESGPRGVHFIFNKENF 570
>NOX1_HUMAN (Q9Y5S8) NADPH oxidase homolog 1 (NOX-1) (NOH-1) (NADH/NADPH| mitogenic oxidase subunit P65-MOX) (Mitogenic oxidase 1) (MOX1) Length = 564 Score = 54.7 bits (130), Expect = 5e-08 Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Frame = -3 Query: 330 KGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCGEPVLVAQLRQLSADFT-- 157 K DI++G KT F RP W + F IA +H VGVF CG L LR+ ++ Sbjct: 491 KATDIVTGLKQKTSFGRPMWDNEFSTIATSHPKSVVGVFLCGPRTLAKSLRKCCHRYSSL 550 Query: 156 PNTNTKFEFHKENF 115 +F F+KENF Sbjct: 551 DPRKVQFYFNKENF 564
>NOX5_HUMAN (Q96PH1) NADPH oxidase 5 (EC 1.6.3.-)| Length = 765 Score = 45.8 bits (107), Expect = 2e-05 Identities = 27/91 (29%), Positives = 45/91 (49%) Frame = -3 Query: 387 EGDARSALIVMLQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYC 208 + D ++ + M +L K+ D ++G +T RP+W VF+++A + +V VF+C Sbjct: 682 KNDMKAIGLQMALDLLANKEKKDSITGLQTRTQPGRPDWSKVFQKVAAEKKG-KVQVFFC 740 Query: 207 GEPVLVAQLRQLSADFTPNTNTKFEFHKENF 115 G P L L+ F F F +ENF Sbjct: 741 GSPALAKVLKGHCEKF------GFRFFQENF 765
>DUOX1_CAEEL (O61213) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-) (DUOX1)| (NADPH thyroid oxidase 1) (Blistered cuticle protein 3) Length = 1497 Score = 43.5 bits (101), Expect = 1e-04 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Frame = -3 Query: 381 DARSALIVMLQELNHA-KKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQ-RVGVFYC 208 D R+ ++ + ++ A G+ + +G K HF RPN+++ F+ I H+ Q ++GVF C Sbjct: 1406 DLRTTMLYICEKHFRATNSGISMFTGLHAKNHFGRPNFKAFFQFIQSEHKEQSKIGVFSC 1465 Query: 207 GEPVLVAQLRQLSAD 163 G L + + AD Sbjct: 1466 GPVNLNESIAEGCAD 1480
>DUOX1_CANFA (Q9MZF4) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-) (NADPH| thyroid oxidase 1) (Thyroid oxidase 1) Length = 1551 Score = 41.6 bits (96), Expect = 5e-04 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 1/90 (1%) Frame = -3 Query: 381 DARSALIVMLQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQR-VGVFYCG 205 D R+ ++ + + + +G THF RP + FK + H R +GVF CG Sbjct: 1462 DLRTTMLYICERHFQKVLNRSLFTGLRSITHFGRPPFEPFFKSLQEVHPQVRKIGVFSCG 1521 Query: 204 EPVLVAQLRQLSADFTPNTNTKFEFHKENF 115 P + + + T F H ENF Sbjct: 1522 PPGMTKNVEKACQLINRQDRTHFSHHYENF 1551
>DUOX1_RAT (Q8CIY2) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-)| Length = 1551 Score = 40.4 bits (93), Expect = 0.001 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 1/90 (1%) Frame = -3 Query: 381 DARSALIVMLQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQR-VGVFYCG 205 D R+ ++ + + + +G THF RP + F + H R +GVF CG Sbjct: 1462 DLRTTMLYICERHFQKVLNRSLFTGLRSVTHFGRPPFEPFFNSLQEVHPQVRKIGVFSCG 1521 Query: 204 EPVLVAQLRQLSADFTPNTNTKFEFHKENF 115 P + + + T F H ENF Sbjct: 1522 PPGMTKNVEKACQLINKQDRTHFSHHYENF 1551
>DUOX1_PIG (Q8HZK3) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-)| Length = 1553 Score = 39.7 bits (91), Expect = 0.002 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 1/90 (1%) Frame = -3 Query: 381 DARSALIVMLQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQR-VGVFYCG 205 D R+ ++ + + + +G THF RP + F + H R +GVF CG Sbjct: 1464 DLRTTMLYICERHFQKVLNRSLFTGLRSITHFGRPPFEPFFNSLQEVHPQVRKIGVFSCG 1523 Query: 204 EPVLVAQLRQLSADFTPNTNTKFEFHKENF 115 P + + + T F H ENF Sbjct: 1524 PPGMTKNVEKACQLINRQDRTHFSHHYENF 1553
>DUOX1_HUMAN (Q9NRD9) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-) (NADPH| thyroid oxidase 1) (Thyroid oxidase 1) (Large NOX 1) (Long NOX 1) Length = 1551 Score = 39.7 bits (91), Expect = 0.002 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 1/90 (1%) Frame = -3 Query: 381 DARSALIVMLQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQR-VGVFYCG 205 D R+ ++ + + + +G THF RP + F + H R +GVF CG Sbjct: 1462 DLRTTMLYICERHFQKVLNRSLFTGLRSITHFGRPPFEPFFNSLQEVHPQVRKIGVFSCG 1521 Query: 204 EPVLVAQLRQLSADFTPNTNTKFEFHKENF 115 P + + + T F H ENF Sbjct: 1522 PPGMTKNVEKACQLINRQDRTHFSHHYENF 1551
>DUOX2_PIG (Q8HZK2) Dual oxidase 2 precursor (EC 1.6.3.1) (EC 1.11.1.-)| (NADH/NADPH thyroid oxidase p138-tox) Length = 1545 Score = 38.9 bits (89), Expect = 0.003 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 1/90 (1%) Frame = -3 Query: 381 DARSALIVMLQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQR-VGVFYCG 205 D R+ ++ + + + +G THF RP + F + H R +GVF CG Sbjct: 1456 DLRTTMLYICERHFQKVLNRSLFTGLRSITHFGRPPFEPFFNSLQEVHPQVRKIGVFSCG 1515 Query: 204 EPVLVAQLRQLSADFTPNTNTKFEFHKENF 115 P + + + T F H ENF Sbjct: 1516 PPGMTKNVEKTCQLINRQDQTHFVHHYENF 1545
>DUOX2_HUMAN (Q9NRD8) Dual oxidase 2 precursor (EC 1.6.3.1) (EC 1.11.1.-) (NADPH| oxidase/peroxidase DUOX2) (NADPH thyroid oxidase 2) (Thyroid oxidase 2) (NADH/NADPH thyroid oxidase p138-tox) (p138 thyroid oxidase) (Large NOX 2) (Long NOX 2) Length = 1548 Score = 36.6 bits (83), Expect = 0.015 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Frame = -3 Query: 381 DARSALIVMLQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQR-VGVFYCG 205 D R+ ++ + + + +G THF RP + F + H R +GVF CG Sbjct: 1459 DLRTTMLYICERHFQKVLNRSLFTGLRSITHFGRPPFEPFFNSLQEVHPQVRKIGVFSCG 1518 Query: 204 EPVLVAQLRQLSADFTPNTNTKFEFHKENF 115 P + + + F H ENF Sbjct: 1519 PPGMTKNVEKACQLVNRQDRAHFMHHYENF 1548
>DUOX_DROME (Q9VQH2) Dual oxidase (EC 1.6.3.1) (EC 1.11.1.-)| Length = 1475 Score = 34.3 bits (77), Expect = 0.074 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 4/93 (4%) Frame = -3 Query: 381 DARSALIVMLQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHEN-QRVGVFYCG 205 D R+ ++ + + I +G HF RP+ S K + H ++GVF CG Sbjct: 1384 DLRTTMLYICENHFQRLSKTSIFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCG 1443 Query: 204 EPVLVAQLRQLSADFTPNTNTK---FEFHKENF 115 L + +SA N K F H ENF Sbjct: 1444 PRPLTKSV--MSACDEVNKTRKLPYFIHHFENF 1474
>DUOX2_RAT (Q9ES45) Dual oxidase 2 precursor (EC 1.6.3.1) (EC 1.11.1.-)| (NADH/NADPH thyroid oxidase THOX2) (Thyroid oxidase 2) (Large NOX 2) (Long NOX 2) Length = 1517 Score = 33.9 bits (76), Expect = 0.097 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 1/90 (1%) Frame = -3 Query: 381 DARSALIVMLQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHEN-QRVGVFYCG 205 D R+ ++ + + + +G THF RP + + H ++GVF CG Sbjct: 1428 DLRTTMLYICERHFQKVLNRSLFTGLRSVTHFGRPPFELFLDSLQEVHPQVHKIGVFSCG 1487 Query: 204 EPVLVAQLRQLSADFTPNTNTKFEFHKENF 115 P + + + F H ENF Sbjct: 1488 PPGMTKNVEKACQLINRQDRAHFVHHYENF 1517
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 32.7 bits (73), Expect = 0.22 Identities = 27/87 (31%), Positives = 36/87 (41%) Frame = -1 Query: 365 SSSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWR 186 SS+ + +S+ S P+S T LT +SSS S S S S T+ S Sbjct: 208 SSTSTSSSSTSTSSSSTSTSPSSTSTSSSLTSTSSSSTSTSQSSTSTSSSSTSTSPSSTS 267 Query: 185 SCGSCRQTSPPIPTQSLSFTRRISNYT 105 + S TSP + S S T S T Sbjct: 268 TSSSSTSTSPSSKSTSASSTSTSSYST 294 Score = 32.7 bits (73), Expect = 0.22 Identities = 30/98 (30%), Positives = 40/98 (40%) Frame = -1 Query: 371 PRSSSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFL 192 P ++S S ST P S P+S T T +SSS S S+ S S T+ S L Sbjct: 181 PTTTSLSSTSTSPSSTST---SPSSTSTSSSSTSTSSSSTSTSSSSTSTSPSSTSTSSSL 237 Query: 191 WRSCGSCRQTSPPIPTQSLSFTRRISNYTYVCSYNVRT 78 + S TS + S S T + T S + T Sbjct: 238 TSTSSSSTSTSQSSTSTSSSSTSTSPSSTSTSSSSTST 275 Score = 30.8 bits (68), Expect = 0.82 Identities = 26/86 (30%), Positives = 38/86 (44%) Frame = -1 Query: 362 SSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWRS 183 +S S +ST + S +S T P T +SSS S S S S T+ S + + Sbjct: 238 TSTSSSSTSTSQSST-STSSSSTSTSPSSTSTSSSSTSTSPSSKSTSASSTSTSSYSTST 296 Query: 182 CGSCRQTSPPIPTQSLSFTRRISNYT 105 S +SP + + S S T S +T Sbjct: 297 SPSLTSSSPTLASTSPSSTSISSTFT 322 Score = 30.8 bits (68), Expect = 0.82 Identities = 28/87 (32%), Positives = 36/87 (41%) Frame = -1 Query: 365 SSSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWR 186 SS+ S N T S P+S T P T +SSS S S+ S S T+ S Sbjct: 174 SSTTSSNPTTTSLSST-STSPSSTSTSPSSTSTSSSSTSTSSSSTSTSSSSTSTSPSSTS 232 Query: 185 SCGSCRQTSPPIPTQSLSFTRRISNYT 105 + S TS + S S T S+ T Sbjct: 233 TSSSLTSTSSSSTSTSQSSTSTSSSST 259 Score = 28.5 bits (62), Expect = 4.1 Identities = 26/85 (30%), Positives = 36/85 (42%) Frame = -1 Query: 365 SSSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWR 186 S+S S++ST S P+S T T + SS S S S T+ S L Sbjct: 244 STSTSQSSTSTSSSST-STSPSSTSTSSSSTSTSPSSKSTSASSTSTSSYSTSTSPSLTS 302 Query: 185 SCGSCRQTSPPIPTQSLSFTRRISN 111 S + TSP + S +FT S+ Sbjct: 303 SSPTLASTSPSSTSISSTFTDSTSS 327
>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor| Length = 374 Score = 32.3 bits (72), Expect = 0.28 Identities = 27/105 (25%), Positives = 51/105 (48%) Frame = -1 Query: 371 PRSSSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFL 192 P SSS S +S+ S +S + + +SSS+S S+ S+ S +++S+ + Sbjct: 155 PSSSSSSSSSSSSSSSS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPI 210 Query: 191 WRSCGSCRQTSPPIPTQSLSFTRRISNYTYVCSYNVRTCLSMVCV 57 S S +S + S S +R S+ +++ + + T +S V V Sbjct: 211 TSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTV 255
>LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 624 Score = 32.0 bits (71), Expect = 0.37 Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 22/75 (29%) Frame = -1 Query: 362 SSCSR----NSTMPRRGSIFC------------PGPASRP------TLPGLTGEASSSAS 249 S CSR +PRRG IFC PGP R T P T AS SA+ Sbjct: 342 SRCSRPLLGRPFLPRRGLIFCSRACSLGSETTAPGPGRRSWSAGTVTTPLTTSTASFSAT 401 Query: 248 QSTMRISALGSFTAA 204 + T ++ G+ T A Sbjct: 402 EGTSETASKGTCTKA 416
>CID_DROME (P19538) Protein cubitus interruptus| Length = 1397 Score = 32.0 bits (71), Expect = 0.37 Identities = 25/74 (33%), Positives = 35/74 (47%) Frame = -3 Query: 357 MLQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCGEPVLVAQLR 178 MLQ LN K + L K H A P +V + IA NH ++ ++Y + +L Sbjct: 1088 MLQYLNLVKDDTNHLE----KEHQAVPVGSNVSETIASNHYREQSNIYYTNKQILTP--- 1140 Query: 177 QLSADFTPNTNTKF 136 + D PNT TKF Sbjct: 1141 PSNVDIQPNT-TKF 1153
>RPOB_DECAR (Q47JB0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1427 Score = 31.6 bits (70), Expect = 0.48 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = +1 Query: 238 MVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 +V C + PG+V +D PGQ + ++ FLEHDD Sbjct: 708 LVTCREKGETILAEPGRVQYMDVAPGQIVSVAASLIPFLEHDD 750
>CPSM_RAT (P07756) Carbamoyl-phosphate synthase [ammonia], mitochondrial| precursor (EC 6.3.4.16) (Carbamoyl-phosphate synthetase I) (CPSase I) Length = 1500 Score = 31.6 bits (70), Expect = 0.48 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +2 Query: 233 FSWLTAMRLKTLRQLGRAKWVLTLVPDRISTPF 331 F W ++TLRQLG+ V+ P+ +ST F Sbjct: 992 FDWCAVSSIRTLRQLGKKTVVVNCNPETVSTDF 1024
>CPSM_MOUSE (Q8C196) Carbamoyl-phosphate synthase [ammonia], mitochondrial| precursor (EC 6.3.4.16) (Carbamoyl-phosphate synthetase I) (CPSase I) Length = 1500 Score = 31.6 bits (70), Expect = 0.48 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +2 Query: 233 FSWLTAMRLKTLRQLGRAKWVLTLVPDRISTPF 331 F W ++TLRQLG+ V+ P+ +ST F Sbjct: 992 FDWCAVSSIRTLRQLGKKTVVVNCNPETVSTDF 1024
>CPSM_HUMAN (P31327) Carbamoyl-phosphate synthase [ammonia], mitochondrial| precursor (EC 6.3.4.16) (Carbamoyl-phosphate synthetase I) (CPSase I) Length = 1500 Score = 31.6 bits (70), Expect = 0.48 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +2 Query: 233 FSWLTAMRLKTLRQLGRAKWVLTLVPDRISTPF 331 F W ++TLRQLG+ V+ P+ +ST F Sbjct: 992 FDWCAVSSIRTLRQLGKKTVVVNCNPETVSTDF 1024
>PDLI2_HUMAN (Q96JY6) PDZ and LIM domain protein 2 (PDZ-LIM protein mystique)| (PDZ-LIM protein) Length = 352 Score = 31.6 bits (70), Expect = 0.48 Identities = 21/47 (44%), Positives = 25/47 (53%) Frame = -1 Query: 368 RSSSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRIS 228 RSS S S PR GS F P P+S LTGEA+ S S ++ S Sbjct: 119 RSSYSSPTSLSPRAGSPFSPPPSS----SSLTGEAAISRSFQSLACS 161
>MAML1_MOUSE (Q6T264) Mastermind-like protein 1 (Mam-1)| Length = 1020 Score = 31.2 bits (69), Expect = 0.63 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%) Frame = -1 Query: 377 LGPRSSSCSRNSTMPRRGSIFCPGPASRP--TLPGLTGE-----ASSSASQSTMRISALG 219 LGP +SSC R P+ G++ GP P +LP +G+ A + SQS + S G Sbjct: 706 LGPSNSSCPR--VFPQPGTLMSMGPGHAPVSSLPSSSGQQDRGVAQFTGSQSLPQNSLYG 763 Query: 218 SFTAASLFLWRSCGSCRQTSPPIPTQS 138 + + + + T IP Q+ Sbjct: 764 MASGLAQIVAQPPPQATSTHAHIPRQT 790
>YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic| region Length = 551 Score = 31.2 bits (69), Expect = 0.63 Identities = 25/92 (27%), Positives = 44/92 (47%) Frame = -1 Query: 362 SSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWRS 183 SS S +ST+ S F +S + + +SSS+S S+ L + +++S++ S Sbjct: 226 SSSSSSSTLFSYSSSFSSSSSSSSS----SSSSSSSSSSSSSSYFTLSTSSSSSIYSSSS 281 Query: 182 CGSCRQTSPPIPTQSLSFTRRISNYTYVCSYN 87 S +S PT S++ T S+ T Y+ Sbjct: 282 YPSFSSSSSSNPTSSITSTSASSSITPASEYS 313
>PDLI2_MACFA (Q9GKU1) PDZ and LIM domain protein 2| Length = 352 Score = 31.2 bits (69), Expect = 0.63 Identities = 21/47 (44%), Positives = 24/47 (51%) Frame = -1 Query: 368 RSSSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRIS 228 RSS S S PR GS F P P S P L GEA+ S S ++ S Sbjct: 119 RSSYSSPTSLSPRAGSPFSPPPFSSP----LAGEAAISRSFQSLACS 161
>TOP6A_METTH (O27089) Type II DNA topoisomerase VI subunit A (EC 5.99.1.3)| Length = 353 Score = 31.2 bits (69), Expect = 0.63 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%) Frame = +1 Query: 202 LAAVKDPNALILMVDCDALEDASPVRPGKVGLDA----GPGQNIDPLLGMVEFLEHDDER 369 L ++ L+ D ++ A VR G + +DA G NI P + VEF++HD ER Sbjct: 122 LGMTREELGLMPEEDGASVYGALTVREGDIEIDALRSGKSGYNISPTIDEVEFVDHDVER 181
>ELOA2_HUMAN (Q8IYF1) RNA polymerase II transcription factor SIII subunit A2| (Elongin A2) (EloA2) (Transcription elongation factor B polypeptide 3B) Length = 753 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Frame = -1 Query: 326 GSIFCPGPASRPTLPGLTGEASS--SASQSTMRISALGSFTAASLFLWRSCGSCR-QTSP 156 G + CPG +P + + S+ Q + A G + + +L +SCG+C + +P Sbjct: 204 GPLLCPGCQGQPQGKAVVSHSKGHKSSRQEKRPLCAQGDWHSPTLIREKSCGACLREETP 263 Query: 155 PIPTQSLSFTRRISNY 108 +P+ + + R+ S++ Sbjct: 264 RMPSWASARDRQPSDF 279
>PLXA1_HUMAN (Q9UIW2) Plexin-A1 precursor (Semaphorin receptor NOV)| Length = 1896 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/84 (25%), Positives = 37/84 (44%) Frame = -1 Query: 326 GSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWRSCGSCRQTSPPIP 147 G I C P++R P G+ + ++ G A+ F++ +C S Q+ + Sbjct: 613 GRIHCRSPSAREVAPITRGQGDQRVVKLYLKSKETGKKFASVDFVFYNC-SVHQSC--LS 669 Query: 146 TQSLSFTRRISNYTYVCSYNVRTC 75 + SF Y +VC++NV C Sbjct: 670 CVNGSFPCHWCKYRHVCTHNVADC 693
>RPOB_LEGPN (O86094) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1368 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = +1 Query: 223 NALILMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 N L +V C + S P K+ +D P Q + ++ FLEHDD Sbjct: 643 NILADLVPCRHQNEFSLTTPDKINYMDVSPKQIVSVAASLIPFLEHDD 690
>RPOB_LEGPL (Q5WZL9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1368 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = +1 Query: 223 NALILMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 N L +V C + S P K+ +D P Q + ++ FLEHDD Sbjct: 643 NILADLVPCRHQNEFSLTTPDKINYMDVSPKQIVSVAASLIPFLEHDD 690
>RPOB_LEGPH (Q5ZYQ0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1368 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = +1 Query: 223 NALILMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 N L +V C + S P K+ +D P Q + ++ FLEHDD Sbjct: 643 NILADLVPCRHQNEFSLTTPDKINYMDVSPKQIVSVAASLIPFLEHDD 690
>RPOB_LEGPA (Q5X866) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1368 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = +1 Query: 223 NALILMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 N L +V C + S P K+ +D P Q + ++ FLEHDD Sbjct: 643 NILADLVPCRHQNEFSLTTPDKINYMDVSPKQIVSVAASLIPFLEHDD 690
>SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%) Frame = -1 Query: 368 RSSSCSRNSTMPRRGSIFCPGP----ASRPTLPGLTGEASSSASQSTMRISA 225 R + RN P+ G + PGP A+RPT+P G SA QS R+SA Sbjct: 1165 RKDNIGRNQPSPQAG-LAGPGPSGYGAARPTIPARAGVI--SAPQSQARVSA 1213
>UBP36_HUMAN (Q9P275) Ubiquitin carboxyl-terminal hydrolase 36 (EC 3.1.2.15)| (Ubiquitin thioesterase 36) (Ubiquitin-specific-processing protease 36) (Deubiquitinating enzyme 36) Length = 1121 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/83 (26%), Positives = 38/83 (45%) Frame = -1 Query: 359 SCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWRSC 180 S + +S P G+ P L T E +S+ S + AL + A++L WR+ Sbjct: 646 STAGHSKTPPSGADSKTVKLKSPVLSNTTTEPASTMSPPPAKKLALSAKKASTL--WRAT 703 Query: 179 GSCRQTSPPIPTQSLSFTRRISN 111 G+ + PP P+ L+ + S+ Sbjct: 704 GNDLRPPPPSPSSDLTHPMKTSH 726
>LZTS2_HUMAN (Q9BRK4) Leucine zipper putative tumor suppressor 2 (Protein| LAPSER1) Length = 669 Score = 30.0 bits (66), Expect = 1.4 Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Frame = -1 Query: 374 GPRSSSCSRNSTMPRRGSI--FCPGPASR-PTLPGLTGEASSSASQSTMRISA------L 222 G ++ S +P GS PGPA PT P + SS+S+ST + L Sbjct: 235 GAEPTTSSPGGHLPSHGSGRGALPGPARGVPTGPSHSDSGRSSSSKSTGSLGGRVAGGLL 294 Query: 221 GSFTAASLFLWRSCGSCRQTSPPIP 147 GS T AS SC + SPP P Sbjct: 295 GSGTRAS----PDSSSCGERSPPPP 315
>RPOB_NITOC (Q3J8Q7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1359 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +1 Query: 205 AAVKDPNALILMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 AA ++ + ++V C + + + P KV +D P Q + ++ FLEHDD Sbjct: 629 AADEEGRLIDMLVSCRHKNEFTLLPPEKVQYIDVSPKQIVSVAASLIPFLEHDD 682
>RPOB_AQUPY (Q9X6Y1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1469 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = +1 Query: 262 DASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 D V+P +V +D P Q I P ++ FLEHDD Sbjct: 722 DIRLVKPEQVDYIDVSPRQVISPSSSLIPFLEHDD 756
>KR2_HHV11 (P04290) Probable serine/threonine-protein kinase (EC 2.7.11.1)| (Virion protein VMW57) Length = 518 Score = 29.6 bits (65), Expect = 1.8 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Frame = -1 Query: 308 GPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWR-SCGSCRQTSPPIPTQSLS 132 G + RP+ P L A S +S + S L A L WR S S R+ SP P + Sbjct: 41 GASGRPSGPSLQDAAVSRSSHGSRHRSGLRERLRAGLSRWRMSRSSHRRASPETPGTAAK 100 Query: 131 FTR 123 R Sbjct: 101 LNR 103
>Y396_HELPY (O25157) Hypothetical protein HP0396| Length = 616 Score = 29.6 bits (65), Expect = 1.8 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 7/54 (12%) Frame = +1 Query: 178 PQLRHKNR-----LAAVKDPNALILMVDCDALEDASP--VRPGKVGLDAGPGQN 318 P LR N L NALI CDAL+ ASP GK+G+DA N Sbjct: 400 PNLRDTNAIIEYILENFSKENALISQGVCDALDHASPEYAMGGKLGIDATSKSN 453
>Y396_HELPJ (Q9ZKF3) Hypothetical protein jhp_0985| Length = 616 Score = 29.6 bits (65), Expect = 1.8 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 7/54 (12%) Frame = +1 Query: 178 PQLRHKNR-----LAAVKDPNALILMVDCDALEDASP--VRPGKVGLDAGPGQN 318 P LR N L NALI CDAL+ ASP GK+G+DA N Sbjct: 400 PNLRDTNAIIEYILENFSKENALISQGVCDALDHASPEYAMGGKLGIDATSKSN 453
>INGR1_MOUSE (P15261) Interferon-gamma receptor alpha chain precursor| (IFN-gamma-R1) (CD119 antigen) Length = 477 Score = 29.6 bits (65), Expect = 1.8 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Frame = -1 Query: 323 SIFCPGPASRPTLPGLTGEASSSA-SQSTMRISALGSFTAASLFLWRSCGSCRQTSPPIP 147 ++ C P S T P A S+ T + A GS +A + SPP P Sbjct: 326 TVICEEPLSTVTAPDSPEAAEQEELSKETKALEAGGSTSAMT-----------PDSPPTP 374 Query: 146 TQSLSFTRRISNYTYVCS 93 TQ SF+ SN + CS Sbjct: 375 TQRRSFSLLSSNQSGPCS 392
>RPOB_AQUAE (O67762) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1468 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = +1 Query: 262 DASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 D V+P +V +D P Q I P ++ FLEHDD Sbjct: 722 DIRLVKPEQVEYIDVSPRQVISPSSSLIPFLEHDD 756
>RPOB_FUSNN (Q8RHI6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1184 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +1 Query: 223 NALILMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 N L +V C + + P +V +D P Q + G++ FLEHDD Sbjct: 586 NKLQGLVVCRYGHEIVEIEPERVNYMDVSPKQVVSVSAGLIPFLEHDD 633
>RPOB_TREDE (Q73JJ7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1167 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = +1 Query: 241 VDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 V C L D + + P + +D P Q I ++ FLEHDD Sbjct: 592 VSCRKLGDYTSISPKDIQYMDVSPKQIISVSASLIPFLEHDD 633
>AAKG2_PONPY (Q5R4S0) 5'-AMP-activated protein kinase, gamma-2 subunit (AMPK| gamma-2 chain) (AMPK gamma2) Length = 524 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = -1 Query: 347 NSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASL 198 +S+ P G FCP PT P L + S++ +ALG A L Sbjct: 150 SSSPPDTGQRFCPSSFQSPTRPPLASPTHYAPSKAAALAAALGPAEAGML 199
>BLI1_CAEEL (Q09457) Cuticle collagen bli-1 (Blistered cuticle protein 1)| Length = 963 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = -1 Query: 371 PRSSSCSRNSTMPRRGSIFCPGPASRPTLPGLTGE 267 PR + C + S P PGP RP PG G+ Sbjct: 374 PRGNPCDQCSAQPNHCPSGPPGPRGRPGPPGFPGQ 408
>AAKG2_HUMAN (Q9UGJ0) 5'-AMP-activated protein kinase, gamma-2 subunit (AMPK| gamma-2 chain) (AMPK gamma2) (H91620p) Length = 569 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = -1 Query: 347 NSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASL 198 +S+ P G FCP PT P L + S++ +ALG A L Sbjct: 194 SSSPPDTGQRFCPSSFQSPTRPPLASPTHYAPSKAAALAAALGPAEAGML 243
>RPOB_BRAJA (Q89J74) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1372 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = +1 Query: 238 MVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 +V C + PV P KV +D P Q + ++ FLE+DD Sbjct: 642 LVVCRHAGEVLPVTPDKVDYMDVSPKQLVSVAAALIPFLENDD 684
>CYDA_BACSU (P94364) Cytochrome d ubiquinol oxidase subunit 1 (EC 1.10.3.-)| (Cytochrome d ubiquinol oxidase subunit I) Length = 468 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +2 Query: 242 LTAMRLKTLRQLGRAKWVLTLVPDRISTPFLAWLSSWSMT 361 L + L ++L +KW L ++ IS PFLA + W MT Sbjct: 346 LGGLWLNRRKKLENSKWYLRIMIALISFPFLANSAGWIMT 385
>SFB3_YEAST (P38810) SED5-binding protein 3 (SEC24-related protein 3) (Lethal| with SEC13 protein 1) Length = 929 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = -1 Query: 302 ASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWRSCGSCRQTSPPIPT 144 AS + P +A Q T I F + +L RS +CR + PP+PT Sbjct: 100 ASEASSPYGQSMLDMTAPQPTSHIVPTQRFEDQAQYLQRSFETCRDSVPPLPT 152
>COGA1_HUMAN (Q07092) Collagen alpha-1(XVI) chain precursor| Length = 1603 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Frame = -1 Query: 311 PGPASRPTLPGLTGEASSSASQSTMRISA-LGSFTAASLFLWRSCGSCRQ 165 PGP P +PGL G ++ ++A LGS L CG C Q Sbjct: 911 PGPPGPPGVPGLQGVPGNNGLPGQPGLTAELGSLPIEQHLLKSICGDCVQ 960
>YQ35_CAEEL (Q09456) Putative cuticle collagen C09G5.5| Length = 317 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Frame = -1 Query: 374 GPRSSSCSRNSTMPR-----RGSIFCPGPASRPTLPGLTGEA 264 GP++S+C P RG PGPA +P PG+ G A Sbjct: 83 GPQASNCPAGPPGPPGASGDRGLDGQPGPAGKPGQPGVAGPA 124
>RPOB_NITWN (Q3SSY0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1380 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = +1 Query: 238 MVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 +V C + PV P KV +D P Q + ++ FLE+DD Sbjct: 647 LVVCRHAGEVLPVTPDKVDFMDVSPKQLVSVAAALIPFLENDD 689
>RPOB_BURPS (Q63Q03) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1368 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = +1 Query: 205 AAVKDPNALI-LMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 AA+ D AL+ +V + V P ++ +D P Q + ++ FLEHDD Sbjct: 627 AAIGDDGALVDELVSSREAGETMMVTPDRIQYMDVAPSQIVSVAASLIPFLEHDD 681
>RPOB_BURP1 (Q3JMQ3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1368 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = +1 Query: 205 AAVKDPNALI-LMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 AA+ D AL+ +V + V P ++ +D P Q + ++ FLEHDD Sbjct: 627 AAIGDDGALVDELVSSREAGETMMVTPDRIQYMDVAPSQIVSVAASLIPFLEHDD 681
>RPOB_BURMA (P0C151) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1368 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = +1 Query: 205 AAVKDPNALI-LMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 AA+ D AL+ +V + V P ++ +D P Q + ++ FLEHDD Sbjct: 627 AAIGDDGALVDELVSSREAGETMMVTPDRIQYMDVAPSQIVSVAASLIPFLEHDD 681
>PACS1_HUMAN (Q6VY07) Phosphofurin acidic cluster sorting protein 1 (PACS-1)| Length = 963 Score = 28.9 bits (63), Expect = 3.1 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%) Frame = -1 Query: 305 PASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWRSCGSCRQTSP-----PIPTQ 141 P +PT P L SSS+S S S+ S T+ S+ + + GS P P P Q Sbjct: 41 PPQQPTPPKLAQATSSSSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGPGPGRTPAPVQ 100
>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%) Frame = -1 Query: 368 RSSSCSRNSTMPRRGSIFCPGPA----SRPTLPGLTGEASSSASQS 243 R + RN P+ G + PGPA +RPT+P G S+ SQ+ Sbjct: 1165 RKDNIGRNQPSPQAG-LAGPGPAGYGAARPTIPARAGVISAPQSQA 1209
>ADO_MOUSE (O54754) Aldehyde oxidase (EC 1.2.3.1) (Retinal oxidase)| Length = 1333 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 8/54 (14%) Frame = +2 Query: 71 KGRFLHYSYIHMCN*KFSL*NSNFVLVLGVKSADN--------CRSCATRTGSP 208 +GR L H CN SL S +V+ +G+ DN CR A RT P Sbjct: 857 EGRILALDVEHYCNGGCSLDESLWVIEMGLLKLDNAYKFPNLRCRGWACRTNLP 910
>CPSM_RANCA (Q91293) Carbamoyl-phosphate synthase [ammonia], mitochondrial| precursor (EC 6.3.4.16) (Carbamoyl-phosphate synthetase I) (CPSase I) Length = 1496 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = +2 Query: 233 FSWLTAMRLKTLRQLGRAKWVLTLVPDRISTPF 331 F W ++TLR +G+ V+ P+ +ST F Sbjct: 989 FDWCAVSSIRTLRHVGKKTVVVNCNPETVSTDF 1021
>RPOB_RHOBA (Q7URW6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1240 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = +1 Query: 262 DASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 D V P +V +D P Q + G++ FLEHDD Sbjct: 590 DFEIVMPEQVSFMDVAPAQMVGVSAGLIPFLEHDD 624
>RPOB_BORPA (Q7W2G9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1378 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = +1 Query: 238 MVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 +V C + PG V +D P Q + ++ FLEHDD Sbjct: 647 LVACREAGETMLTAPGNVHYMDVAPSQIVSVAASLIPFLEHDD 689
>RPOB_BORBR (Q7WRD9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1378 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = +1 Query: 238 MVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 +V C + PG V +D P Q + ++ FLEHDD Sbjct: 647 LVACREAGETMLTAPGNVHYMDVAPSQIVSVAASLIPFLEHDD 689
>PACS1_RAT (O88588) Phosphofurin acidic cluster sorting protein 1 (PACS-1)| Length = 961 Score = 28.5 bits (62), Expect = 4.1 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Frame = -1 Query: 311 PGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWRSCGSCRQTSP-----PIP 147 P +PT P L SSS+S S S+ S T+ S+ + + GS P P P Sbjct: 37 PSQPQQPTPPKLAQATSSSSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGPGPGRTPAP 96 Query: 146 TQ 141 Q Sbjct: 97 VQ 98
>RPOB_BORPE (Q7W0R9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1370 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = +1 Query: 238 MVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 +V C + PG V +D P Q + ++ FLEHDD Sbjct: 639 LVACREAGETMLTAPGNVHYMDVAPSQIVSVAASLIPFLEHDD 681
>PO2F3_MOUSE (P31362) POU domain, class 2, transcription factor 3| (Octamer-binding transcription factor 11) (Oct-11) (Epoc-1) Length = 431 Score = 28.5 bits (62), Expect = 4.1 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = -1 Query: 347 NSTMPRRGSIFC-PGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWRSCGSC 171 +STMP + C PG SRP+ PG ASS + +A+ S +++S + S GS Sbjct: 365 HSTMPGTVTSSCSPGNNSRPSSPGSGLHASSPTASQNNSKAAMNSSSSSS---FNSSGSW 421 Query: 170 RQTSPP 153 + + P Sbjct: 422 YRWNHP 427
>RPOB_PSYAR (Q4FQH3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1372 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +1 Query: 295 LDAGPGQNIDPLLGMVEFLEHDD 363 +D P Q + G++ FLEHDD Sbjct: 672 MDVSPSQVVSVAAGLIPFLEHDD 694
>RL1_ONYPE (Q6YQW6) 50S ribosomal protein L1| Length = 230 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Frame = +1 Query: 175 LPQLRHKNRLAAVKD--PNALILMVDCDALEDASPVRPGKVGLDAGPGQNIDPLLGMVEF 348 +PQL RL K PN V D L+ ++ GK+ NI +LG V F Sbjct: 120 MPQLSKLGRLLGPKGLMPNPKTGTVTNDVLQAVKEIKNGKIEYRLDKSGNIHAILGKVSF 179 Query: 349 LE 354 E Sbjct: 180 DE 181
>RPOB_CORDI (P60280) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1175 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Frame = +1 Query: 262 DASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 363 D V P V LD P Q + M+ FLEHDD Sbjct: 564 DIQVVAPESVDYLDVSPRQMVSVATAMIPFLEHDD 598
>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)| Length = 1670 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -1 Query: 329 RGSIFCPGPASRPTLPGLTGEASSSASQST 240 +GS PGPA LPGL G+ S S +T Sbjct: 1411 KGSKGEPGPAGSDGLPGLKGKRGDSGSPAT 1440 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -1 Query: 332 RRGSIFCPGPASRPTLPGLTG 270 +RG++ PG A RP LPG+ G Sbjct: 1028 KRGTLGFPGRAGRPGLPGIHG 1048
>RPOB_AZOSE (Q5P339) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1377 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +1 Query: 295 LDAGPGQNIDPLLGMVEFLEHDD 363 +D PGQ + ++ FLEHDD Sbjct: 678 MDVAPGQIVSVAASLIPFLEHDD 700
>RPOB_CHLTR (O84317) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +1 Query: 295 LDAGPGQNIDPLLGMVEFLEHDD 363 +D P Q + + G++ FLEHDD Sbjct: 598 MDVSPKQLVSVVTGLIPFLEHDD 620
>RPOB_CHLTA (Q3KM47) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +1 Query: 295 LDAGPGQNIDPLLGMVEFLEHDD 363 +D P Q + + G++ FLEHDD Sbjct: 598 MDVSPKQLVSVVTGLIPFLEHDD 620
>RPOB_CHLMU (P56869) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +1 Query: 295 LDAGPGQNIDPLLGMVEFLEHDD 363 +D P Q + + G++ FLEHDD Sbjct: 598 MDVSPKQLVSVVTGLIPFLEHDD 620
>MUC1_YEAST (P08640) Mucin-like protein 1 precursor| Length = 1367 Score = 28.1 bits (61), Expect = 5.3 Identities = 23/84 (27%), Positives = 32/84 (38%) Frame = -1 Query: 365 SSSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWR 186 SSS S+ S P P+S T SS+ S+ + S T S Sbjct: 441 SSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPV 500 Query: 185 SCGSCRQTSPPIPTQSLSFTRRIS 114 + + +S P+PT S S T S Sbjct: 501 TSSTTESSSAPVPTPSSSTTESSS 524
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/36 (44%), Positives = 16/36 (44%) Frame = -1 Query: 374 GPRSSSCSRNSTMPRRGSIFCPGPASRPTLPGLTGE 267 GPR S R T P PGPA P PG GE Sbjct: 792 GPRGSPGERGETGP-------PGPAGFPGAPGQNGE 820
>POLN_SAGV (Q9JGL0) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2466 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 8/49 (16%) Frame = -3 Query: 237 ENQRVGVFYCGEPVLVAQL--------RQLSADFTPNTNTKFEFHKENF 115 E +V V EP+ A L R+L A TPN +T F+ E+F Sbjct: 2160 ERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLTPNIHTLFDMSAEDF 2208
>POLN_GETV (Q5Y389) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2466 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 8/49 (16%) Frame = -3 Query: 237 ENQRVGVFYCGEPVLVAQL--------RQLSADFTPNTNTKFEFHKENF 115 E +V V EP+ A L R+L A TPN +T F+ E+F Sbjct: 2160 ERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLTPNIHTLFDMSAEDF 2208
>DGP11_ARATH (Q9LK71) Putative protease Do-like 11, mitochondrial precursor (EC| 3.4.21.-) Length = 565 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -1 Query: 206 ASLFLWRSCGSCRQTSPPIPTQSLSFTRRISNYTYVC 96 +SLF +RSC + S P T + R+S Y Y+C Sbjct: 23 SSLFFYRSCNNVLTNSLPTVTTA----GRVSRYGYIC 55
>WAPL_DROME (Q9W517) Protein wings apart-like (Protein parallel sister| chromatids) Length = 1741 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = -1 Query: 305 PASRPTLPGLTGEASSSASQSTMRISALGS 216 P S P+LP T S+SAS S+ SA GS Sbjct: 297 PGSEPSLPPPTSAPSASASTSSQLPSASGS 326
>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 615 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Frame = -1 Query: 338 MPRRGSIFCP---GPASRPTLPGLTGEASSSASQSTMRISALGSFTA 207 +PRRG IFC S PT PG + + S+ + ++ SF+A Sbjct: 354 LPRRGLIFCSRACSLGSEPTAPGPSRRSWSAGPVTAPLAASTASFSA 400
>RPOB_PARUW (Q6MDM1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1254 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +1 Query: 295 LDAGPGQNIDPLLGMVEFLEHDD 363 +D P Q + + G++ FLEHDD Sbjct: 599 MDVSPKQLVSIVTGLIPFLEHDD 621
>PO2F3_HUMAN (Q9UKI9) POU domain, class 2, transcription factor 3| (Octamer-binding transcription factor 11) (Oct-11) (Transcription factor Skn-1) (PLA-1 protein) Length = 436 Score = 27.7 bits (60), Expect = 6.9 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%) Frame = -1 Query: 347 NSTMPRRGSIFC-PGPASRPTLPGLTGEASS---SASQSTMRISALGSF-TAASLFLW 189 +STMP + C PG SRP+ PG ASS S + S +++ SF ++ S + W Sbjct: 372 HSTMPGTVTSSCSPGNNSRPSSPGSGLHASSPTASQNNSKAAVNSASSFNSSGSWYRW 429
>KIF3C_MOUSE (O35066) Kinesin-like protein KIF3C| Length = 796 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 11/46 (23%) Frame = -1 Query: 308 GPASRPTLPGLTGEASSSASQST-----------MRISALGSFTAA 204 GPA++PT G +G S+S S S+ + +SALG+ AA Sbjct: 263 GPATQPTAGGGSGSGSASGSASSGERPKEASKINLSLSALGNVIAA 308
>RPOB_CHLPN (Q9Z9A0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +1 Query: 295 LDAGPGQNIDPLLGMVEFLEHDD 363 +D P Q + + G++ FLEHDD Sbjct: 598 MDVSPKQLVSIVTGLIPFLEHDD 620
>RPOB_CHLCV (Q822J1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +1 Query: 295 LDAGPGQNIDPLLGMVEFLEHDD 363 +D P Q + + G++ FLEHDD Sbjct: 598 MDVSPKQLVSIVTGLIPFLEHDD 620
>RPOB_CHLAB (Q5L5I3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +1 Query: 295 LDAGPGQNIDPLLGMVEFLEHDD 363 +D P Q + + G++ FLEHDD Sbjct: 598 MDVSPKQLVSIVTGLIPFLEHDD 620
>VGLB_BHV2B (P12641) Glycoprotein B-1 precursor| Length = 917 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -1 Query: 341 TMPRRGSIFCPGPASRPTLPGLTGEASSSASQ 246 T+ R S PG P +PG+T E S +AS+ Sbjct: 82 TLAPRASRDAPGTPKVPAMPGVTPEPSGNASE 113
>PACS1_MOUSE (Q8K212) Phosphofurin acidic cluster sorting protein 1 (PACS-1)| Length = 961 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Frame = -1 Query: 311 PGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWRSCGSCRQTSP-----PIP 147 P +PT P L SSS+S S S+ S T+ S+ + + GS P P P Sbjct: 37 PPQPQQPTPPKLAQATSSSSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGPGPGRTPAP 96 Query: 146 TQ 141 Q Sbjct: 97 VQ 98
>ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator (ARNT| protein) (Dioxin receptor, nuclear translocator) (Hypoxia-inducible factor 1 beta) (HIF-1 beta) Length = 800 Score = 27.7 bits (60), Expect = 6.9 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 7/91 (7%) Frame = -1 Query: 374 GPRSSSCSRNSTMPRRGSIFCPGPA-------SRPTLPGLTGEASSSASQSTMRISALGS 216 G SS+ + +GS F P P S T P + SSSA Q +IS + Sbjct: 583 GLSSSTVPATQQLFSQGSSFPPNPRPAENFRNSGLTPPVTIVQPSSSAGQILAQISRHSN 642 Query: 215 FTAASLFLWRSCGSCRQTSPPIPTQSLSFTR 123 T S W S + S +PTQ+ + TR Sbjct: 643 LTQGSAPTWTS-STRPGFSAQLPTQATAKTR 672
>TIF1B_HUMAN (Q13263) Transcription intermediary factor 1-beta (TIF1-beta)| (Tripartite motif protein 28) (Nuclear corepressor KAP-1) (KRAB-associated protein 1) (KAP-1) (KRAB-interacting protein 1) (KRIP-1) (RING finger protein 96) Length = 835 Score = 27.7 bits (60), Expect = 6.9 Identities = 24/71 (33%), Positives = 32/71 (45%) Frame = -1 Query: 365 SSSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWR 186 ++S + S P GS G R T P AS+SA+ S+ A G A +L L Sbjct: 12 AASAASGSPGPGEGSA---GGEKRSTAPSAAASASASAAASS---PAGGG--AEALELLE 63 Query: 185 SCGSCRQTSPP 153 CG CR+ P Sbjct: 64 HCGVCRERLRP 74
>COASY_HUMAN (Q13057) Bifunctional coenzyme A synthase (CoA synthase) (NBP)| (POV-2) [Includes: Phosphopantetheine adenylyltransferase (EC 2.7.7.3) (Pantetheine-phosphate adenylyltransferase) (PPAT) (Dephospho-CoA pyrophosphorylase); Dephospho-CoA kinase ( Length = 564 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Frame = -1 Query: 326 GSIFCPGPASRPTLP------GLTGEASSSASQSTMRISALGSFTAAS 201 G++ P P RP LP GLTG + S S R+ LG+F S Sbjct: 342 GNLLRP-PYERPELPTCLYVIGLTGISGSGKSSIAQRLKGLGAFVIDS 388
>CAP5_ARATH (Q9ZVN6) Putative clathrin assembly protein At1g05020| Length = 653 Score = 27.3 bits (59), Expect = 9.1 Identities = 21/80 (26%), Positives = 34/80 (42%) Frame = -1 Query: 377 LGPRSSSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASL 198 L +SS + + P S P P+S+ + + + S ++ R S GSF + SL Sbjct: 326 LKDQSSFPASSGLYPSPNSFLPPPPSSKDSAVSSSLDFGDSTIDTSERYSDYGSFRSTSL 385 Query: 197 FLWRSCGSCRQTSPPIPTQS 138 S +SPP+ S Sbjct: 386 EDLMSRTEAGTSSPPMSCHS 405
>SFRS8_HUMAN (Q12872) Splicing factor, arginine/serine-rich 8 (Suppressor of| white apricot protein homolog) Length = 951 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -1 Query: 311 PGPASRPTLPGLTGEASSSASQSTMRISALGSFTA 207 P P + P P T E SS A+ +T SAL A Sbjct: 414 PPPGTTPPPPPTTAETSSGATSTTTTTSALAPVAA 448
>IF2_XANC5 (Q3BRP5) Translation initiation factor IF-2| Length = 904 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = -1 Query: 371 PRSSSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQST 240 P + S S S+ PR PASRP P + S++A T Sbjct: 200 PAARSPSSPSSAPRAARPAGASPASRPAAPARADDRSNAAKHKT 243
>E1BL_ADET1 (P04885) Early E1B 44 kDa protein| Length = 391 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +1 Query: 214 KDPNALIL-MVDCDALEDASPVRPGKVGLDAGPGQNIDPLLGMVEFLEHDDE 366 ++PN L + +CDA + + G+VGL A DP L V+ LE + Sbjct: 341 RNPNRLFTRLCECDASHQTADIVLGEVGLPA----TADPTLDSVDCLEFSSD 388
>VG01_EHV1V (P84394) Hypothetical gene 1 protein| Length = 202 Score = 27.3 bits (59), Expect = 9.1 Identities = 21/79 (26%), Positives = 34/79 (43%) Frame = -1 Query: 362 SSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWRS 183 S C RR S+ C P + + S S+S S + +LGS ++SL S Sbjct: 17 SMCPPPPNGARRASLGCAPPLNSRPVCCAPSSVSLSSSSSRRSMPSLGSSRSSSLPSTGS 76 Query: 182 CGSCRQTSPPIPTQSLSFT 126 S + +P++ S+T Sbjct: 77 LRSITRDPERLPSRPPSYT 95
>VG01_EHV1H (P84450) Hypothetical gene 1 protein| Length = 202 Score = 27.3 bits (59), Expect = 9.1 Identities = 21/79 (26%), Positives = 34/79 (43%) Frame = -1 Query: 362 SSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWRS 183 S C RR S+ C P + + S S+S S + +LGS ++SL S Sbjct: 17 SMCPPPPNGARRASLGCAPPLNSRPVCCAPSSVSLSSSSSRRSMPSLGSSRSSSLPSTGS 76 Query: 182 CGSCRQTSPPIPTQSLSFT 126 S + +P++ S+T Sbjct: 77 LRSITRDPERLPSRPPSYT 95
>VG01_EHV1B (P28978) Hypothetical gene 1 protein| Length = 202 Score = 27.3 bits (59), Expect = 9.1 Identities = 21/79 (26%), Positives = 34/79 (43%) Frame = -1 Query: 362 SSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWRS 183 S C RR S+ C P + + S S+S S + +LGS ++SL S Sbjct: 17 SMCPPPPNGARRASLGCAPPLNSRPVCCAPSSVSLSSSSSRRSMPSLGSSRSSSLPSTGS 76 Query: 182 CGSCRQTSPPIPTQSLSFT 126 S + +P++ S+T Sbjct: 77 LRSITRDPERLPSRPPSYT 95
>GUN4_TRIRE (O14405) Endoglucanase-4 precursor (EC 3.2.1.4) (Endoglucanase IV)| (Endo-1,4-beta-glucanase IV) (Cellulase IV) (EGIV) Length = 344 Score = 27.3 bits (59), Expect = 9.1 Identities = 21/73 (28%), Positives = 33/73 (45%) Frame = -1 Query: 374 GPRSSSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLF 195 G +++ + ++T+P GS GP SR T T +ASS S ST + + Sbjct: 256 GSSAATATASATVPGGGS----GPTSRTTTTARTTQASSRPS-STPPATTSAPAGGPTQT 310 Query: 194 LWRSCGSCRQTSP 156 L+ CG + P Sbjct: 311 LYGQCGGSGYSGP 323
>ARNT_MOUSE (P53762) Aryl hydrocarbon receptor nuclear translocator (ARNT| protein) (Dioxin receptor, nuclear translocator) (Hypoxia-inducible factor 1 beta) (HIF-1 beta) Length = 791 Score = 27.3 bits (59), Expect = 9.1 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 7/91 (7%) Frame = -1 Query: 374 GPRSSSCSRNSTMPRRGSIFCPGPA-------SRPTLPGLTGEASSSASQSTMRISALGS 216 G SS+ + +GS F P P S T P + SSSA Q +IS + Sbjct: 573 GISSSTVPATQQLFSQGSSFPPNPRPAENFRNSGLTPPVTIVQPSSSAGQILAQISRHSN 632 Query: 215 FTAASLFLWRSCGSCRQTSPPIPTQSLSFTR 123 S W S + +PTQ+ + TR Sbjct: 633 PAQGSAPTWTSTSRPGFAAQQVPTQATAKTR 663
>YB95_SCHPO (O42970) Hypothetical serine-rich protein C1E8.05 precursor| Length = 317 Score = 27.3 bits (59), Expect = 9.1 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 4/101 (3%) Frame = -1 Query: 383 AMLGPRSSSC----SRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGS 216 +M+G R+SS S +ST S P+S + + ++SSS+S S+ S+ S Sbjct: 135 SMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSS 194 Query: 215 FTAASLFLWRSCGSCRQTSPPIPTQSLSFTRRISNYTYVCS 93 + +S S S S P+ S S + + S+ +++ S Sbjct: 195 SSKSS-----SSSSSSSKSSASPSSSKS-SSKFSSSSFITS 229
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/21 (61%), Positives = 13/21 (61%) Frame = -1 Query: 326 GSIFCPGPASRPTLPGLTGEA 264 G I PGP P LPGL GEA Sbjct: 402 GMIGPPGPQGFPGLPGLPGEA 422
>VGLG_HRSV1 (P20896) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 292 Score = 27.3 bits (59), Expect = 9.1 Identities = 22/67 (32%), Positives = 31/67 (46%) Frame = -1 Query: 338 MPRRGSIFCPGPASRPTLPGLTGEASSSASQSTMRISALGSFTAASLFLWRSCGSCRQTS 159 MP++ I PA +PTL T E +S SQST+ + +T L + +S Sbjct: 222 MPKKEII--TNPAKKPTLK--TTERDTSISQSTVLDTITPKYTIQQQSLHSTTSENTPSS 277 Query: 158 PPIPTQS 138 IPT S Sbjct: 278 TQIPTAS 284
>HBB_PIG (P02067) Hemoglobin beta subunit (Hemoglobin beta chain)| (Beta-globin) Length = 146 Score = 27.3 bits (59), Expect = 9.1 Identities = 21/75 (28%), Positives = 33/75 (44%) Frame = -3 Query: 357 MLQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCGEPVLVAQLR 178 +LQ + K +D L GT K + ++ V+ EN R+ G ++V R Sbjct: 67 VLQSFSDGLKHLDNLKGTFAKLSELHCD------QLHVDPENFRL----LGNVIVVVLAR 116 Query: 177 QLSADFTPNTNTKFE 133 +L DF PN F+ Sbjct: 117 RLGHDFNPNVQAAFQ 131
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -1 Query: 311 PGPASRPTLPGLTGEASSSASQSTMRISAL 222 PGPA P LPG+ GE+ Q + L Sbjct: 1344 PGPAGLPGLPGMKGESGLPGPQGPAGLPGL 1373 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,550,318 Number of Sequences: 219361 Number of extensions: 1110825 Number of successful extensions: 4684 Number of sequences better than 10.0: 113 Number of HSP's better than 10.0 without gapping: 4068 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4652 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
